Wall clock time and date at job start Mon Mar 30 2020 01:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35456 * 125.56386 * 2 1 4 4 C 1.39841 * 107.86280 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08508 * 0.02562 * 4 3 2 6 6 C 1.46682 * 126.23081 * 180.02562 * 5 4 3 7 7 O 1.21699 * 119.99752 * 187.80625 * 6 5 4 8 8 N 1.34777 * 120.00220 * 7.80748 * 6 5 4 9 9 C 1.46502 * 119.99650 * 6.56730 * 8 6 5 10 10 C 1.46497 * 120.00206 * 186.56335 * 8 6 5 11 11 C 1.53496 * 114.20429 * 120.00036 * 10 8 6 12 12 N 1.47062 * 87.98682 * 87.71641 * 11 10 8 13 13 C 1.36939 * 136.05976 * 207.08049 * 12 11 10 14 14 H 1.07989 * 119.99984 * 354.77671 * 13 12 11 15 15 C 1.38818 * 119.99771 * 174.77593 * 13 12 11 16 16 N 1.31617 * 119.99630 * 181.93211 * 15 13 12 17 17 Si 1.86797 * 119.99931 * 1.93027 * 15 13 12 18 18 H 1.48506 * 109.46843 * 174.14468 * 17 15 13 19 19 H 1.48500 * 109.47329 * 294.14126 * 17 15 13 20 20 H 1.48500 * 109.47442 * 54.14585 * 17 15 13 21 21 C 1.47074 * 87.88385 * 27.34155 * 12 11 10 22 22 N 1.35534 * 125.56625 * 180.34777 * 2 1 3 23 23 C 1.46501 * 125.67524 * 0.02562 * 22 2 1 24 24 H 1.09004 * 109.46956 * 89.97696 * 1 2 3 25 25 H 1.08998 * 109.47402 * 209.98085 * 1 2 3 26 26 H 1.09001 * 109.47648 * 329.98142 * 1 2 3 27 27 H 1.07994 * 126.06536 * 0.06397 * 3 2 1 28 28 H 1.08003 * 126.45322 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47338 * 276.04143 * 9 8 6 30 30 H 1.08999 * 109.47149 * 36.03952 * 9 8 6 31 31 H 1.09004 * 109.46924 * 156.04735 * 9 8 6 32 32 H 1.09001 * 113.28002 * 346.93598 * 10 8 6 33 33 H 1.09000 * 113.46954 * 332.93936 * 11 10 8 34 34 H 1.08999 * 113.46940 * 202.50128 * 11 10 8 35 35 H 0.96995 * 120.00391 * 5.02488 * 16 15 13 36 36 H 1.09001 * 113.46441 * 87.43320 * 21 12 11 37 37 H 1.08998 * 113.46977 * 217.87783 * 21 12 11 38 38 H 1.08997 * 109.47308 * 273.80499 * 23 22 2 39 39 H 1.09000 * 109.47368 * 33.80741 * 23 22 2 40 40 H 1.09001 * 109.47324 * 153.80694 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 3.6269 0.6767 -0.0006 5 6 3.6121 -0.7019 -0.0015 6 6 4.7859 -1.5815 -0.0019 7 8 4.6467 -2.7819 -0.1459 8 7 6.0186 -1.0604 0.1573 9 6 6.1776 0.3612 0.4739 10 6 7.1995 -1.9154 0.0139 11 6 8.1638 -1.4756 -1.0964 12 7 8.8211 -0.6056 -0.1096 13 6 9.5385 0.5602 -0.1458 14 1 9.7998 1.0042 -1.0949 15 6 9.9297 1.1714 1.0376 16 7 10.5862 2.3117 1.0036 17 14 9.5244 0.3755 2.6783 18 1 10.1685 1.1440 3.7737 19 1 8.0527 0.3707 2.8760 20 1 10.0300 -1.0207 2.6895 21 6 8.3745 -1.5423 0.9327 22 7 2.2952 -1.1025 -0.0067 23 6 1.8241 -2.4896 -0.0156 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3634 0.8898 0.5141 27 1 1.9544 2.1268 0.0010 28 1 4.5024 1.3092 -0.0004 29 1 6.1462 0.9441 -0.4466 30 1 5.3698 0.6792 1.1330 31 1 7.1351 0.5179 0.9706 32 1 6.9625 -2.9793 0.0045 33 1 7.6766 -0.9269 -1.9024 34 1 8.8032 -2.2801 -1.4600 35 1 10.7330 2.7617 0.1570 36 1 9.0694 -2.3644 1.1040 37 1 8.0667 -1.0505 1.8554 38 1 1.6423 -2.8182 1.0076 39 1 0.8989 -2.5555 -0.5882 40 1 2.5806 -3.1274 -0.4730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042473531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:36 Heat of formation + Delta-G solvation = 87.509898 kcal Electronic energy + Delta-G solvation = -22252.776352 eV Core-core repulsion = 19071.245476 eV Total energy + Delta-G solvation = -3181.530877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.58583 -41.18702 -39.28465 -36.09371 -34.54942 -33.60308 -32.54595 -30.24580 -28.31272 -27.69255 -27.24607 -26.92292 -24.56788 -22.66481 -21.83603 -20.40631 -20.05250 -19.43957 -18.03142 -17.94197 -17.05441 -16.91786 -16.17940 -15.92762 -15.76394 -15.56852 -15.08892 -14.76407 -14.43179 -14.16835 -13.99046 -13.92560 -13.74899 -13.39251 -13.30310 -13.01085 -12.84867 -12.83174 -12.63418 -12.50891 -12.17015 -11.94795 -11.26810 -11.12952 -11.04051 -10.94398 -9.77509 -9.62184 -9.18373 -9.00700 -8.59141 -5.44402 0.40784 1.38432 1.46190 1.52673 1.66768 1.73387 2.24876 2.26936 2.53137 2.93595 3.23368 3.46406 3.61217 3.94639 3.96031 4.15283 4.25941 4.28354 4.30274 4.36397 4.51987 4.54982 4.60358 4.61910 4.67155 4.74927 4.76744 4.81557 4.87205 5.03603 5.10847 5.15395 5.19539 5.26864 5.50364 5.88949 5.97083 5.99921 6.30554 6.37294 6.72370 7.02541 7.33705 8.26973 8.95037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.005190 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.745384 B = 5393.295040 C = 5885.371455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.051 3.949 3 C -0.226 4.226 4 C -0.154 4.154 5 C -0.087 4.087 6 C 0.587 3.413 7 O -0.581 6.581 8 N -0.574 5.574 9 C 0.074 3.926 10 C 0.116 3.884 11 C 0.112 3.888 12 N -0.648 5.648 13 C -0.279 4.279 14 H 0.050 0.950 15 C -0.073 4.073 16 N -0.972 5.972 17 Si 1.100 2.900 18 H -0.308 1.308 19 H -0.264 1.264 20 H -0.268 1.268 21 C 0.081 3.919 22 N -0.416 5.416 23 C 0.060 3.940 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.247 0.753 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.438 -7.671 -0.714 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.249 4.249 4 C -0.181 4.181 5 C -0.199 4.199 6 C 0.379 3.621 7 O -0.465 6.465 8 N -0.303 5.303 9 C -0.068 4.068 10 C 0.011 3.989 11 C -0.015 4.015 12 N -0.377 5.377 13 C -0.407 4.407 14 H 0.068 0.932 15 C -0.266 4.266 16 N -0.617 5.617 17 Si 0.928 3.072 18 H -0.237 1.237 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.045 4.045 22 N -0.090 5.090 23 C -0.080 4.080 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.244 -8.335 0.801 23.767 hybrid contribution 0.842 0.328 -2.029 2.222 sum -21.401 -8.007 -1.228 22.883 Atomic orbital electron populations 1.20532 0.84603 1.04900 1.04111 1.21283 0.95546 0.85091 1.04818 1.21028 0.91911 0.99186 1.12751 1.22441 0.99663 0.92382 1.03572 1.19807 0.84628 0.93858 1.21632 1.17233 0.82372 0.86500 0.75948 1.90673 1.86232 1.15831 1.53728 1.47026 1.04279 1.10623 1.68354 1.22481 1.03733 0.79635 1.00936 1.22359 0.84014 0.95083 0.97437 1.22960 0.92045 0.93040 0.93447 1.46208 1.64599 1.21782 1.05136 1.19925 1.29805 0.96871 0.94078 0.93236 1.26732 0.98342 0.97298 1.04180 1.71002 1.44720 1.18143 1.27872 0.83423 0.76462 0.74788 0.72525 1.23693 1.19120 1.19415 1.23425 0.93721 0.93185 0.94121 1.43973 1.03950 1.07754 1.53281 1.22395 1.02517 0.78685 1.04441 0.89374 0.90310 0.88230 0.82035 0.82130 0.92435 0.89092 0.90844 0.85604 0.93877 0.91007 0.94337 0.90616 0.93049 0.89943 0.87084 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.88 71.23 0.70 -0.22 16 2 C 0.05 1.05 6.87 41.34 0.28 1.33 16 3 C -0.23 -5.24 10.71 22.01 0.24 -5.00 16 4 C -0.15 -4.40 8.74 22.57 0.20 -4.20 16 5 C -0.09 -2.71 6.71 40.35 0.27 -2.44 16 6 C 0.59 20.65 7.62 86.45 0.66 21.30 16 7 O -0.58 -21.74 14.09 -4.35 -0.06 -21.80 16 8 N -0.57 -20.67 3.12 -826.10 -2.57 -23.24 16 9 C 0.07 2.70 7.85 127.77 1.00 3.70 16 10 C 0.12 4.16 4.70 45.55 0.21 4.37 16 11 C 0.11 4.29 8.31 83.18 0.69 4.98 16 12 N -0.65 -30.16 2.40 -738.02 -1.77 -31.93 16 13 C -0.28 -15.65 10.54 84.03 0.89 -14.77 16 14 H 0.05 3.04 8.05 -2.92 -0.02 3.02 16 15 C -0.07 -4.24 5.47 84.86 0.46 -3.77 16 16 N -0.97 -61.44 13.70 21.65 0.30 -61.14 16 17 Si 1.10 52.36 24.01 68.60 1.65 54.00 16 18 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 19 H -0.26 -11.36 5.88 99.48 0.59 -10.77 16 20 H -0.27 -11.71 6.55 99.48 0.65 -11.06 16 21 C 0.08 3.21 5.00 83.26 0.42 3.63 16 22 N -0.42 -10.46 3.16 -519.72 -1.64 -12.10 16 23 C 0.06 1.16 10.29 127.77 1.31 2.48 16 24 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 0.67 7.75 -2.39 -0.02 0.65 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.16 4.56 4.42 -2.91 -0.01 4.55 16 29 H 0.06 2.08 7.26 -2.39 -0.02 2.06 16 30 H 0.09 2.91 5.45 -2.39 -0.01 2.90 16 31 H 0.07 3.14 3.28 -2.38 -0.01 3.13 16 32 H 0.13 4.11 7.26 -2.39 -0.02 4.10 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.25 15.74 8.73 -92.71 -0.81 14.93 16 36 H 0.08 2.78 8.07 -2.39 -0.02 2.76 16 37 H 0.05 2.13 3.44 -2.39 -0.01 2.12 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.36 7.78 -2.39 -0.02 1.34 16 40 H 0.09 2.12 6.00 -2.39 -0.01 2.11 16 Total: -1.00 -71.68 308.94 4.07 -67.60 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.84 Total: 17.21 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 7.34 Total: 11.40 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.69 Total: -128.42 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.06 Total: -21.80 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.65 Total: 54.00 kcal Total: -71.68 4.07 -67.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042473531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.115 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds