Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39844 * 126.46127 * 2 1 4 4 C 1.35453 * 107.86437 * 179.70138 * 3 2 1 5 5 N 1.35535 * 108.87289 * 0.42756 * 4 3 2 6 6 C 1.46498 * 125.67709 * 179.82709 * 5 4 3 7 7 C 1.37647 * 108.64308 * 359.57167 * 5 4 3 8 8 C 1.46681 * 126.23274 * 180.26275 * 7 5 4 9 9 O 1.21699 * 120.00288 * 98.91470 * 8 7 5 10 10 N 1.34778 * 119.99796 * 278.91068 * 8 7 5 11 11 C 1.46500 * 119.99974 * 4.84927 * 10 8 7 12 12 C 1.46500 * 119.99977 * 184.84157 * 10 8 7 13 13 C 1.53944 * 113.74135 * 218.74581 * 12 10 8 14 14 N 1.47822 * 86.03375 * 222.08320 * 13 12 10 15 15 C 1.36940 * 134.45398 * 204.64190 * 14 13 12 16 16 H 1.07997 * 119.99261 * 184.74076 * 15 14 13 17 17 C 1.38808 * 119.99934 * 4.74137 * 15 14 13 18 18 N 1.31616 * 120.00523 * 5.18844 * 17 15 14 19 19 Si 1.86807 * 119.99609 * 185.18189 * 17 15 14 20 20 H 1.48496 * 109.46917 * 94.99816 * 19 17 15 21 21 H 1.48503 * 109.46830 * 214.99781 * 19 17 15 22 22 H 1.48496 * 109.46978 * 334.99734 * 19 17 15 23 23 C 1.47575 * 91.04888 * 24.54766 * 14 13 12 24 24 H 1.08998 * 109.47344 * 270.04524 * 1 2 3 25 25 H 1.08995 * 109.46803 * 30.04136 * 1 2 3 26 26 H 1.09000 * 109.46869 * 150.03939 * 1 2 3 27 27 H 1.07999 * 126.06407 * 359.96471 * 3 2 1 28 28 H 1.07998 * 125.56024 * 180.29661 * 4 3 2 29 29 H 1.08998 * 109.47305 * 264.69733 * 6 5 4 30 30 H 1.09000 * 109.46935 * 144.69746 * 6 5 4 31 31 H 1.08998 * 109.46929 * 24.69186 * 6 5 4 32 32 H 1.08993 * 109.47317 * 84.63258 * 11 10 8 33 33 H 1.09005 * 109.46638 * 204.63615 * 11 10 8 34 34 H 1.09000 * 109.46943 * 324.62983 * 11 10 8 35 35 H 1.09000 * 112.94633 * 350.33784 * 12 10 8 36 36 H 1.08991 * 113.76940 * 336.34448 * 13 12 10 37 37 H 1.08998 * 113.76816 * 107.74944 * 13 12 10 38 38 H 0.96993 * 120.00386 * 180.02562 * 18 17 15 39 39 H 1.09002 * 113.77351 * 221.14811 * 23 14 13 40 40 H 1.09001 * 113.77011 * 89.75365 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 0.0067 5 7 3.6284 -0.6626 0.0014 6 6 4.8226 -1.5112 0.0023 7 6 2.3263 -1.1089 0.0008 8 6 1.8898 -2.5093 0.0011 9 8 1.5522 -3.0412 1.0423 10 7 1.8626 -3.2069 -1.1518 11 6 2.3686 -2.6016 -2.3863 12 6 1.3272 -4.5704 -1.1704 13 6 2.1110 -5.5316 -2.0823 14 7 0.7902 -6.0393 -2.5099 15 6 0.3410 -7.2223 -3.0333 16 1 -0.6901 -7.3204 -3.3392 17 6 1.2109 -8.2952 -3.1705 18 7 2.4390 -8.2106 -2.7049 19 14 0.6384 -9.8595 -4.0161 20 1 1.0266 -9.8182 -5.4488 21 1 1.2719 -11.0343 -3.3652 22 1 -0.8385 -9.9694 -3.9064 23 6 0.1501 -4.7608 -2.1441 24 1 -0.3634 0.0008 1.0276 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3633 -0.8903 -0.5132 27 1 2.0137 2.1549 -0.0005 28 1 4.4973 1.3251 0.0130 29 1 5.0674 -1.7951 -1.0212 30 1 4.6307 -2.4077 0.5919 31 1 5.6580 -0.9623 0.4367 32 1 3.4481 -2.7403 -2.4429 33 1 1.8954 -3.0781 -3.2449 34 1 2.1384 -1.5362 -2.3894 35 1 1.1397 -4.9670 -0.1726 36 1 2.6665 -5.0304 -2.8748 37 1 2.7091 -6.2630 -1.5388 38 1 3.0470 -8.9602 -2.8012 39 1 -0.8144 -4.8778 -1.6500 40 1 0.1285 -4.0326 -2.9549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042650637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = 80.320714 kcal Electronic energy + Delta-G solvation = -21936.314001 eV Core-core repulsion = 18754.471378 eV Total energy + Delta-G solvation = -3181.842623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41496 -39.36100 -37.45543 -34.42377 -33.71975 -32.02291 -30.24334 -28.44540 -27.57156 -26.59525 -25.27439 -24.84730 -23.62247 -21.58678 -20.20765 -18.98211 -18.33276 -17.36618 -16.91671 -16.37963 -15.45018 -15.20418 -15.09303 -14.72957 -13.89030 -13.78552 -13.62258 -13.24455 -13.15087 -12.85356 -12.72715 -12.50834 -12.09764 -11.98558 -11.97844 -11.81133 -11.58874 -11.46440 -11.39648 -10.90256 -10.72429 -10.30263 -10.08698 -9.70967 -9.60271 -8.85175 -8.55657 -8.19839 -8.02634 -6.93714 -5.81412 -3.16043 1.93705 2.40708 2.85044 3.05573 3.36340 3.40275 3.44137 3.45466 4.42753 4.63201 4.66784 4.97238 5.01669 5.15300 5.24295 5.30043 5.36037 5.37683 5.43825 5.47097 5.70076 5.71801 5.81397 5.86726 6.03651 6.06623 6.07492 6.13648 6.36442 6.40150 6.54379 6.71693 6.88738 7.04094 7.15417 7.22566 7.31301 7.48711 7.68982 7.92910 8.36271 8.98343 9.65176 10.51558 11.34416 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.004102 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.376721 B = 6824.199498 C = 7187.290012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.002 4.002 5 N -0.424 5.424 6 C 0.068 3.932 7 C -0.029 4.029 8 C 0.585 3.415 9 O -0.532 6.532 10 N -0.588 5.588 11 C 0.081 3.919 12 C 0.090 3.910 13 C 0.150 3.850 14 N -0.605 5.605 15 C -0.223 4.223 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.254 0.746 39 H 0.048 0.952 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 18.443 2.882 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C -0.226 4.226 4 C -0.134 4.134 5 N -0.099 5.099 6 C -0.074 4.074 7 C -0.142 4.142 8 C 0.371 3.629 9 O -0.408 6.408 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.013 4.013 13 C 0.024 3.976 14 N -0.332 5.332 15 C -0.351 4.351 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.018 4.018 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.181 0.819 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.199 17.518 3.321 18.318 hybrid contribution 0.002 -0.735 -0.689 1.007 sum 4.201 16.784 2.632 17.501 Atomic orbital electron populations 1.20173 0.89871 1.02030 1.01912 1.19723 0.95282 0.90883 1.06850 1.20625 0.91730 0.98285 1.11921 1.21805 0.99269 0.82480 1.09875 1.43840 1.05101 1.06230 1.54773 1.22151 0.85774 0.95581 1.03872 1.20182 0.83854 0.93784 1.16415 1.17258 0.78257 0.83608 0.83816 1.90823 1.48853 1.69596 1.31503 1.48085 1.60387 1.15492 1.08065 1.21737 0.98790 0.98311 0.87376 1.24129 0.96705 0.79151 1.01360 1.22775 0.90047 0.91958 0.92823 1.45641 1.03982 1.08633 1.74895 1.19010 0.95335 0.86581 1.34137 0.90024 1.24797 0.96102 0.98067 1.01311 1.69810 1.05631 1.31397 1.49729 0.86065 0.77874 0.82636 0.78992 1.21616 1.21610 1.20449 1.22986 0.95799 0.88762 0.94277 0.91662 0.91688 0.92159 0.84379 0.81852 0.90290 0.89740 0.89342 0.93112 0.89992 0.91426 0.86505 0.95344 0.89725 0.93571 0.93363 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.20 36.00 0.37 -0.65 16 2 C -0.12 -1.63 6.21 -104.15 -0.65 -2.28 16 3 C -0.20 -2.28 10.76 -39.98 -0.43 -2.71 16 4 C 0.00 -0.02 11.37 -16.91 -0.19 -0.21 16 5 N -0.42 -5.10 3.16 -120.24 -0.38 -5.48 16 6 C 0.07 0.63 10.89 59.85 0.65 1.28 16 7 C -0.03 -0.43 4.79 -81.98 -0.39 -0.82 16 8 C 0.59 10.31 6.61 -12.85 -0.08 10.22 16 9 O -0.53 -11.33 16.58 5.19 0.09 -11.24 16 10 N -0.59 -9.97 3.09 -177.29 -0.55 -10.52 16 11 C 0.08 1.13 8.91 59.85 0.53 1.66 16 12 C 0.09 1.82 4.41 -70.15 -0.31 1.51 16 13 C 0.15 3.49 7.14 -2.83 -0.02 3.47 16 14 N -0.61 -15.50 3.70 -177.89 -0.66 -16.16 16 15 C -0.22 -6.24 10.69 -15.06 -0.16 -6.40 16 16 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -26.97 11.29 55.49 0.63 -26.34 16 19 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.11 2.27 8.43 -2.97 -0.03 2.25 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.08 0.66 7.96 -51.93 -0.41 0.24 16 30 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 31 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.05 0.64 7.96 -51.93 -0.41 0.23 16 33 H 0.08 1.19 6.15 -51.93 -0.32 0.87 16 34 H 0.07 0.85 7.00 -51.93 -0.36 0.49 16 35 H 0.12 2.60 7.20 -51.93 -0.37 2.22 16 36 H 0.03 0.64 6.71 -51.93 -0.35 0.29 16 37 H 0.08 2.22 6.87 -51.93 -0.36 1.87 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.72 6.92 -51.93 -0.36 0.36 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -33.47 332.10 -7.56 -41.03 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.86 Total: -0.32 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.81 Total: 7.06 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.96 Total: -58.50 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.47 -7.56 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042650637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.347 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds