Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39844 * 126.46127 * 2 1 4 4 C 1.35453 * 107.86437 * 179.70138 * 3 2 1 5 5 N 1.35535 * 108.87289 * 0.42756 * 4 3 2 6 6 C 1.46498 * 125.67709 * 179.82709 * 5 4 3 7 7 C 1.37647 * 108.64308 * 359.57167 * 5 4 3 8 8 C 1.46681 * 126.23274 * 180.26275 * 7 5 4 9 9 O 1.21699 * 120.00288 * 98.91470 * 8 7 5 10 10 N 1.34778 * 119.99796 * 278.91068 * 8 7 5 11 11 C 1.46500 * 119.99974 * 4.84927 * 10 8 7 12 12 C 1.46500 * 119.99977 * 184.84157 * 10 8 7 13 13 C 1.53944 * 113.74135 * 218.74581 * 12 10 8 14 14 N 1.47822 * 86.03375 * 222.08320 * 13 12 10 15 15 C 1.36940 * 134.45398 * 204.64190 * 14 13 12 16 16 H 1.07997 * 119.99261 * 184.74076 * 15 14 13 17 17 C 1.38808 * 119.99934 * 4.74137 * 15 14 13 18 18 N 1.31616 * 120.00523 * 5.18844 * 17 15 14 19 19 Si 1.86807 * 119.99609 * 185.18189 * 17 15 14 20 20 H 1.48496 * 109.46917 * 94.99816 * 19 17 15 21 21 H 1.48503 * 109.46830 * 214.99781 * 19 17 15 22 22 H 1.48496 * 109.46978 * 334.99734 * 19 17 15 23 23 C 1.47575 * 91.04888 * 24.54766 * 14 13 12 24 24 H 1.08998 * 109.47344 * 270.04524 * 1 2 3 25 25 H 1.08995 * 109.46803 * 30.04136 * 1 2 3 26 26 H 1.09000 * 109.46869 * 150.03939 * 1 2 3 27 27 H 1.07999 * 126.06407 * 359.96471 * 3 2 1 28 28 H 1.07998 * 125.56024 * 180.29661 * 4 3 2 29 29 H 1.08998 * 109.47305 * 264.69733 * 6 5 4 30 30 H 1.09000 * 109.46935 * 144.69746 * 6 5 4 31 31 H 1.08998 * 109.46929 * 24.69186 * 6 5 4 32 32 H 1.08993 * 109.47317 * 84.63258 * 11 10 8 33 33 H 1.09005 * 109.46638 * 204.63615 * 11 10 8 34 34 H 1.09000 * 109.46943 * 324.62983 * 11 10 8 35 35 H 1.09000 * 112.94633 * 350.33784 * 12 10 8 36 36 H 1.08991 * 113.76940 * 336.34448 * 13 12 10 37 37 H 1.08998 * 113.76816 * 107.74944 * 13 12 10 38 38 H 0.96993 * 120.00386 * 180.02562 * 18 17 15 39 39 H 1.09002 * 113.77351 * 221.14811 * 23 14 13 40 40 H 1.09001 * 113.77011 * 89.75365 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 0.0067 5 7 3.6284 -0.6626 0.0014 6 6 4.8226 -1.5112 0.0023 7 6 2.3263 -1.1089 0.0008 8 6 1.8898 -2.5093 0.0011 9 8 1.5522 -3.0412 1.0423 10 7 1.8626 -3.2069 -1.1518 11 6 2.3686 -2.6016 -2.3863 12 6 1.3272 -4.5704 -1.1704 13 6 2.1110 -5.5316 -2.0823 14 7 0.7902 -6.0393 -2.5099 15 6 0.3410 -7.2223 -3.0333 16 1 -0.6901 -7.3204 -3.3392 17 6 1.2109 -8.2952 -3.1705 18 7 2.4390 -8.2106 -2.7049 19 14 0.6384 -9.8595 -4.0161 20 1 1.0266 -9.8182 -5.4488 21 1 1.2719 -11.0343 -3.3652 22 1 -0.8385 -9.9694 -3.9064 23 6 0.1501 -4.7608 -2.1441 24 1 -0.3634 0.0008 1.0276 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3633 -0.8903 -0.5132 27 1 2.0137 2.1549 -0.0005 28 1 4.4973 1.3251 0.0130 29 1 5.0674 -1.7951 -1.0212 30 1 4.6307 -2.4077 0.5919 31 1 5.6580 -0.9623 0.4367 32 1 3.4481 -2.7403 -2.4429 33 1 1.8954 -3.0781 -3.2449 34 1 2.1384 -1.5362 -2.3894 35 1 1.1397 -4.9670 -0.1726 36 1 2.6665 -5.0304 -2.8748 37 1 2.7091 -6.2630 -1.5388 38 1 3.0470 -8.9602 -2.8012 39 1 -0.8144 -4.8778 -1.6500 40 1 0.1285 -4.0326 -2.9549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042650637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = 59.233658 kcal Electronic energy + Delta-G solvation = -21937.228404 eV Core-core repulsion = 18754.471378 eV Total energy + Delta-G solvation = -3182.757026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40668 -40.83387 -39.10737 -35.97751 -34.59372 -34.04037 -31.21185 -29.85607 -28.97816 -27.96007 -26.66808 -26.19689 -25.25113 -23.03638 -21.12463 -20.53776 -19.63380 -18.89484 -18.42270 -17.81091 -17.04124 -16.53735 -16.29840 -16.04604 -15.70899 -15.09852 -14.84212 -14.33579 -14.18608 -13.99779 -13.89797 -13.66184 -13.58804 -13.35343 -13.28211 -13.20092 -12.86698 -12.83284 -12.79124 -12.57744 -12.42031 -12.14102 -11.96999 -11.59956 -11.16990 -10.91415 -9.69444 -9.41940 -8.99938 -8.97303 -7.93876 -5.30559 0.92781 1.24725 1.45671 1.47446 1.56767 1.81616 2.00461 2.26145 2.47425 3.21807 3.36716 3.53106 3.77184 3.91388 4.15363 4.26467 4.27030 4.31272 4.36627 4.42104 4.44794 4.53428 4.62515 4.66861 4.78440 4.83949 4.85292 4.89999 5.11588 5.14339 5.18462 5.20038 5.43731 5.47743 5.61067 5.87395 5.97747 6.08963 6.29927 6.44528 6.85899 6.97706 7.54752 8.47433 9.21635 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.004102 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.376721 B = 6824.199498 C = 7187.290012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.127 4.127 3 C -0.213 4.213 4 C 0.021 3.979 5 N -0.426 5.426 6 C 0.063 3.937 7 C -0.069 4.069 8 C 0.590 3.410 9 O -0.580 6.580 10 N -0.585 5.585 11 C 0.083 3.917 12 C 0.113 3.887 13 C 0.157 3.843 14 N -0.634 5.634 15 C -0.238 4.238 16 H 0.086 0.914 17 C -0.062 4.062 18 N -0.951 5.951 19 Si 0.982 3.018 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.267 1.267 23 C 0.116 3.884 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.163 0.837 28 H 0.207 0.793 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.250 0.750 39 H 0.051 0.949 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 20.907 1.923 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C -0.237 4.237 4 C -0.113 4.113 5 N -0.101 5.101 6 C -0.078 4.078 7 C -0.182 4.182 8 C 0.378 3.622 9 O -0.459 6.459 10 N -0.316 5.316 11 C -0.058 4.058 12 C 0.008 3.992 13 C 0.030 3.970 14 N -0.361 5.361 15 C -0.366 4.366 16 H 0.104 0.896 17 C -0.256 4.256 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.192 1.192 23 C -0.010 4.010 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.180 0.820 28 H 0.223 0.777 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.747 20.025 2.341 20.713 hybrid contribution -0.143 -1.378 -0.353 1.430 sum 4.604 18.646 1.988 19.309 Atomic orbital electron populations 1.20205 0.89672 1.02377 1.01785 1.20066 0.95850 0.91462 1.06123 1.20957 0.91778 0.98743 1.12201 1.22532 1.00487 0.81792 1.06474 1.44043 1.04545 1.07208 1.54310 1.22337 0.85880 0.95099 1.04472 1.19782 0.85808 0.92029 1.20583 1.17663 0.77007 0.84691 0.82860 1.90786 1.50988 1.71002 1.33162 1.48013 1.60105 1.14100 1.09384 1.21870 0.99502 0.99031 0.85446 1.23419 0.95834 0.80649 0.99319 1.22620 0.89383 0.91747 0.93211 1.45938 1.05508 1.09574 1.75117 1.19399 0.95733 0.87780 1.33694 0.89612 1.25653 0.96330 1.01242 1.02332 1.70001 1.06703 1.32072 1.51119 0.85007 0.77907 0.78383 0.77699 1.21125 1.22075 1.19168 1.23073 0.95803 0.87308 0.94772 0.92050 0.89191 0.93895 0.81980 0.77654 0.89203 0.92231 0.85789 0.91646 0.90418 0.89586 0.89073 0.94225 0.93383 0.94077 0.93083 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 10.20 71.24 0.73 -1.23 16 2 C -0.13 -3.24 6.21 -19.56 -0.12 -3.36 16 3 C -0.21 -4.08 10.76 22.01 0.24 -3.84 16 4 C 0.02 0.34 11.37 83.48 0.95 1.29 16 5 N -0.43 -9.17 3.16 -534.32 -1.69 -10.86 16 6 C 0.06 1.04 10.89 127.77 1.39 2.43 16 7 C -0.07 -1.98 4.79 40.35 0.19 -1.79 16 8 C 0.59 21.13 6.61 86.45 0.57 21.70 16 9 O -0.58 -25.83 16.58 -4.35 -0.07 -25.90 16 10 N -0.59 -19.93 3.09 -833.04 -2.58 -22.50 16 11 C 0.08 2.20 8.91 127.77 1.14 3.34 16 12 C 0.11 4.68 4.41 46.75 0.21 4.89 16 13 C 0.16 7.49 7.14 86.44 0.62 8.10 16 14 N -0.63 -33.03 3.70 -716.71 -2.65 -35.68 16 15 C -0.24 -13.46 10.69 84.03 0.90 -12.56 16 16 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 17 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 18 N -0.95 -57.23 11.29 21.65 0.24 -56.99 16 19 Si 0.98 45.61 29.56 68.60 2.03 47.63 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C 0.12 4.87 8.43 86.48 0.73 5.60 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.04 1.13 7.96 -2.39 -0.02 1.11 16 27 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.09 1.28 7.96 -2.39 -0.02 1.26 16 30 H 0.06 1.29 7.94 -2.39 -0.02 1.27 16 31 H 0.12 1.13 8.12 -2.39 -0.02 1.11 16 32 H 0.06 1.54 7.96 -2.39 -0.02 1.52 16 33 H 0.08 2.13 6.15 -2.38 -0.01 2.12 16 34 H 0.09 1.99 7.00 -2.39 -0.02 1.97 16 35 H 0.09 4.29 7.20 -2.39 -0.02 4.28 16 36 H 0.04 1.80 6.71 -2.39 -0.02 1.79 16 37 H 0.05 2.65 6.87 -2.39 -0.02 2.63 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.32 6.92 -2.39 -0.02 2.31 16 Total: -1.00 -74.78 332.10 4.32 -70.46 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.03 Total: 12.35 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 8.00 Total: 21.49 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -6.67 Total: -126.03 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.07 Total: -25.90 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.78 4.32 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042650637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.698 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds