Wall clock time and date at job start Mon Mar 30 2020 01:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35452 * 125.56709 * 2 1 4 4 C 1.39833 * 107.86722 * 179.72037 * 3 2 1 5 5 C 1.50699 * 126.45973 * 180.26483 * 4 3 2 6 6 C 1.37876 * 107.08188 * 0.42165 * 4 3 2 7 7 C 1.46683 * 126.23365 * 179.84387 * 6 4 3 8 8 O 1.21690 * 120.00207 * 256.30988 * 7 6 4 9 9 N 1.34777 * 119.99775 * 76.30938 * 7 6 4 10 10 C 1.46499 * 120.00031 * 355.05414 * 9 7 6 11 11 C 1.46494 * 120.00156 * 175.05466 * 9 7 6 12 12 C 1.53946 * 113.84281 * 141.35330 * 11 9 7 13 13 N 1.47579 * 86.11979 * 90.74976 * 12 11 9 14 14 C 1.36930 * 134.49625 * 204.64332 * 13 12 11 15 15 H 1.08000 * 120.00228 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99668 * 359.97438 * 14 13 12 17 17 N 1.31610 * 120.00314 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99557 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46925 * 90.00478 * 18 16 14 20 20 H 1.48503 * 109.46618 * 209.99833 * 18 16 14 21 21 H 1.48489 * 109.47292 * 330.00236 * 18 16 14 22 22 C 1.47585 * 91.01085 * 24.64114 * 13 12 11 23 23 N 1.35538 * 125.56282 * 179.97438 * 2 1 3 24 24 H 0.97003 * 125.67320 * 359.97438 * 23 2 1 25 25 H 1.08994 * 109.47020 * 270.02557 * 1 2 3 26 26 H 1.09008 * 109.47156 * 30.02051 * 1 2 3 27 27 H 1.09000 * 109.47604 * 150.01561 * 1 2 3 28 28 H 1.07994 * 126.06745 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47152 * 270.18260 * 5 4 3 30 30 H 1.09000 * 109.47207 * 30.18825 * 5 4 3 31 31 H 1.09004 * 109.46723 * 150.18507 * 5 4 3 32 32 H 1.09003 * 109.47377 * 274.57689 * 10 9 7 33 33 H 1.09004 * 109.47299 * 34.57656 * 10 9 7 34 34 H 1.09001 * 109.47327 * 154.57907 * 10 9 7 35 35 H 1.09000 * 112.94472 * 9.66675 * 11 9 7 36 36 H 1.08999 * 113.76872 * 205.05781 * 12 11 9 37 37 H 1.09006 * 113.76769 * 336.44592 * 12 11 9 38 38 H 0.97004 * 120.00065 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.77029 * 221.05221 * 22 13 12 40 40 H 1.09002 * 113.76780 * 89.66576 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0065 5 6 4.8486 1.5591 0.0144 6 6 3.6121 -0.7020 0.0007 7 6 4.7859 -1.5817 0.0010 8 8 5.1268 -2.1419 -1.0240 9 7 5.4868 -1.7695 1.1368 10 6 5.1432 -1.0128 2.3432 11 6 6.5923 -2.7303 1.1649 12 6 7.8017 -2.2633 1.9952 13 7 7.1537 -2.9409 3.1349 14 6 7.2082 -2.7950 4.4953 15 1 6.6177 -3.4377 5.1314 16 6 8.0232 -1.8217 5.0568 17 7 8.7432 -1.0388 4.2816 18 14 8.0981 -1.6231 6.9128 19 1 9.1747 -2.4873 7.4600 20 1 8.3836 -0.2048 7.2476 21 1 6.7957 -2.0193 7.5059 22 6 6.4233 -3.8390 2.2194 23 7 2.2952 -1.1026 0.0005 24 1 1.9832 -2.0210 0.0013 25 1 -0.3633 0.0005 1.0276 26 1 -0.3634 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.9546 2.1268 -0.0004 29 1 5.1467 1.7761 -1.0113 30 1 4.6202 2.4911 0.5314 31 1 5.6624 1.0481 0.5290 32 1 5.6482 -0.0471 2.3226 33 1 4.0648 -0.8582 2.3804 34 1 5.4609 -1.5701 3.2245 35 1 6.8570 -3.1026 0.1752 36 1 8.7447 -2.7181 1.6919 37 1 7.8665 -1.1809 2.1066 38 1 9.3130 -0.3589 4.6740 39 1 5.3875 -4.0148 2.5100 40 1 6.9614 -4.7568 1.9822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043102710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:56 Heat of formation + Delta-G solvation = 70.991647 kcal Electronic energy + Delta-G solvation = -22121.629853 eV Core-core repulsion = 18939.382692 eV Total energy + Delta-G solvation = -3182.247162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30975 -39.37908 -37.44587 -34.04821 -32.73347 -32.03702 -31.39254 -28.10682 -27.58833 -26.51106 -25.74904 -24.82329 -23.10913 -21.12869 -20.38656 -19.17434 -18.27470 -17.39538 -16.73290 -16.20394 -15.14927 -14.99888 -14.71664 -14.49586 -13.83201 -13.69108 -13.29419 -13.06894 -12.92696 -12.84392 -12.66112 -12.51434 -12.36506 -12.19797 -11.84881 -11.50446 -11.33766 -11.26485 -11.20071 -10.88746 -10.62415 -10.16851 -9.83971 -9.69048 -9.57553 -8.83966 -8.64497 -8.03153 -7.79946 -6.92086 -5.82757 -3.16414 2.00766 2.56463 2.88207 3.33205 3.35473 3.40556 3.42362 3.75107 4.39931 4.82545 4.91490 5.05198 5.13252 5.28764 5.38142 5.43129 5.50140 5.54309 5.70969 5.80769 5.89200 5.93937 6.09846 6.11324 6.15425 6.21785 6.33569 6.41531 6.47747 6.51525 6.74843 6.97887 6.98791 7.10641 7.16086 7.28343 7.51088 7.52808 7.87903 7.93985 8.48594 8.98131 9.64102 10.52272 11.33217 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.005012 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.989964 B = 5585.402757 C = 5998.354459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.026 3.974 3 C -0.197 4.197 4 C -0.114 4.114 5 C -0.088 4.088 6 C -0.024 4.024 7 C 0.583 3.417 8 O -0.547 6.547 9 N -0.562 5.562 10 C 0.076 3.924 11 C 0.085 3.915 12 C 0.154 3.846 13 N -0.607 5.607 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.002 4.002 17 N -0.916 5.916 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.106 3.894 23 N -0.528 5.528 24 H 0.415 0.585 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.255 0.745 39 H 0.045 0.955 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 3.074 -7.369 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.222 4.222 4 C -0.121 4.121 5 C -0.145 4.145 6 C -0.139 4.139 7 C 0.369 3.631 8 O -0.425 6.425 9 N -0.292 5.292 10 C -0.067 4.067 11 C -0.020 4.020 12 C 0.028 3.972 13 N -0.335 5.335 14 C -0.356 4.356 15 H 0.097 0.903 16 C -0.199 4.199 17 N -0.562 5.562 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.021 4.021 23 N -0.123 5.123 24 H 0.252 0.748 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.405 2.772 -7.573 15.644 hybrid contribution 0.099 -0.366 1.148 1.209 sum -13.305 2.406 -6.425 14.970 Atomic orbital electron populations 1.20325 0.88019 1.03124 1.02663 1.20336 0.93325 0.86159 1.09084 1.20426 0.91789 0.97572 1.12401 1.19761 0.95457 0.90807 1.06105 1.20265 0.94341 0.98147 1.01772 1.19948 0.83856 0.93964 1.16103 1.17214 0.82375 0.80084 0.83470 1.90784 1.70125 1.49645 1.31966 1.47382 1.31667 1.39713 1.10434 1.22035 0.98693 0.96981 0.88959 1.22996 0.89087 0.90764 0.99132 1.22632 0.91290 0.99960 0.83323 1.46162 1.49869 1.36455 1.00965 1.18979 1.22262 1.14464 0.79873 0.90321 1.24754 0.98850 0.98584 0.97724 1.69808 1.30581 1.22598 1.33261 0.86186 0.77758 0.77109 0.85082 1.21653 1.21581 1.20632 1.23010 0.96410 0.93416 0.89217 1.41643 1.04736 1.08436 1.57523 0.74821 0.90960 0.90114 0.91908 0.84448 0.91844 0.91507 0.91513 0.92772 0.93178 0.86425 0.88675 0.94367 0.90120 0.93523 0.93709 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.41 36.00 0.37 -0.27 16 2 C 0.03 0.31 7.13 -81.95 -0.58 -0.28 16 3 C -0.20 -2.55 10.66 -39.98 -0.43 -2.97 16 4 C -0.11 -1.72 6.01 -104.16 -0.63 -2.34 16 5 C -0.09 -1.24 10.20 36.01 0.37 -0.87 16 6 C -0.02 -0.39 5.11 -81.98 -0.42 -0.81 16 7 C 0.58 10.89 7.16 -12.85 -0.09 10.80 16 8 O -0.55 -11.67 16.58 5.20 0.09 -11.58 16 9 N -0.56 -10.64 3.09 -177.29 -0.55 -11.18 16 10 C 0.08 1.42 8.97 59.85 0.54 1.96 16 11 C 0.08 1.69 4.53 -70.14 -0.32 1.37 16 12 C 0.15 3.53 6.77 -2.98 -0.02 3.51 16 13 N -0.61 -14.64 2.27 -178.07 -0.40 -15.04 16 14 C -0.23 -6.02 9.70 -15.06 -0.15 -6.16 16 15 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 16 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 17 N -0.92 -25.77 11.38 55.49 0.63 -25.14 16 18 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.11 2.15 8.38 -2.97 -0.02 2.13 16 23 N -0.53 -6.93 6.10 -5.69 -0.03 -6.97 16 24 H 0.41 4.54 8.96 -40.82 -0.37 4.17 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 32 H 0.05 1.04 7.08 -51.93 -0.37 0.67 16 33 H 0.05 0.85 6.97 -51.93 -0.36 0.49 16 34 H 0.12 2.56 5.14 -51.93 -0.27 2.30 16 35 H 0.10 1.86 7.20 -51.93 -0.37 1.48 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 2.03 6.90 -51.93 -0.36 1.67 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -30.94 329.13 -7.60 -38.54 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.79 Total: 4.25 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.47 Total: 5.92 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.36 Total: -58.33 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.94 -7.60 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043102710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.535 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds