Wall clock time and date at job start Mon Mar 30 2020 01:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35452 * 125.56709 * 2 1 4 4 C 1.39833 * 107.86722 * 179.72037 * 3 2 1 5 5 C 1.50699 * 126.45973 * 180.26483 * 4 3 2 6 6 C 1.37876 * 107.08188 * 0.42165 * 4 3 2 7 7 C 1.46683 * 126.23365 * 179.84387 * 6 4 3 8 8 O 1.21690 * 120.00207 * 256.30988 * 7 6 4 9 9 N 1.34777 * 119.99775 * 76.30938 * 7 6 4 10 10 C 1.46499 * 120.00031 * 355.05414 * 9 7 6 11 11 C 1.46494 * 120.00156 * 175.05466 * 9 7 6 12 12 C 1.53946 * 113.84281 * 141.35330 * 11 9 7 13 13 N 1.47579 * 86.11979 * 90.74976 * 12 11 9 14 14 C 1.36930 * 134.49625 * 204.64332 * 13 12 11 15 15 H 1.08000 * 120.00228 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99668 * 359.97438 * 14 13 12 17 17 N 1.31610 * 120.00314 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99557 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46925 * 90.00478 * 18 16 14 20 20 H 1.48503 * 109.46618 * 209.99833 * 18 16 14 21 21 H 1.48489 * 109.47292 * 330.00236 * 18 16 14 22 22 C 1.47585 * 91.01085 * 24.64114 * 13 12 11 23 23 N 1.35538 * 125.56282 * 179.97438 * 2 1 3 24 24 H 0.97003 * 125.67320 * 359.97438 * 23 2 1 25 25 H 1.08994 * 109.47020 * 270.02557 * 1 2 3 26 26 H 1.09008 * 109.47156 * 30.02051 * 1 2 3 27 27 H 1.09000 * 109.47604 * 150.01561 * 1 2 3 28 28 H 1.07994 * 126.06745 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47152 * 270.18260 * 5 4 3 30 30 H 1.09000 * 109.47207 * 30.18825 * 5 4 3 31 31 H 1.09004 * 109.46723 * 150.18507 * 5 4 3 32 32 H 1.09003 * 109.47377 * 274.57689 * 10 9 7 33 33 H 1.09004 * 109.47299 * 34.57656 * 10 9 7 34 34 H 1.09001 * 109.47327 * 154.57907 * 10 9 7 35 35 H 1.09000 * 112.94472 * 9.66675 * 11 9 7 36 36 H 1.08999 * 113.76872 * 205.05781 * 12 11 9 37 37 H 1.09006 * 113.76769 * 336.44592 * 12 11 9 38 38 H 0.97004 * 120.00065 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.77029 * 221.05221 * 22 13 12 40 40 H 1.09002 * 113.76780 * 89.66576 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0065 5 6 4.8486 1.5591 0.0144 6 6 3.6121 -0.7020 0.0007 7 6 4.7859 -1.5817 0.0010 8 8 5.1268 -2.1419 -1.0240 9 7 5.4868 -1.7695 1.1368 10 6 5.1432 -1.0128 2.3432 11 6 6.5923 -2.7303 1.1649 12 6 7.8017 -2.2633 1.9952 13 7 7.1537 -2.9409 3.1349 14 6 7.2082 -2.7950 4.4953 15 1 6.6177 -3.4377 5.1314 16 6 8.0232 -1.8217 5.0568 17 7 8.7432 -1.0388 4.2816 18 14 8.0981 -1.6231 6.9128 19 1 9.1747 -2.4873 7.4600 20 1 8.3836 -0.2048 7.2476 21 1 6.7957 -2.0193 7.5059 22 6 6.4233 -3.8390 2.2194 23 7 2.2952 -1.1026 0.0005 24 1 1.9832 -2.0210 0.0013 25 1 -0.3633 0.0005 1.0276 26 1 -0.3634 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.9546 2.1268 -0.0004 29 1 5.1467 1.7761 -1.0113 30 1 4.6202 2.4911 0.5314 31 1 5.6624 1.0481 0.5290 32 1 5.6482 -0.0471 2.3226 33 1 4.0648 -0.8582 2.3804 34 1 5.4609 -1.5701 3.2245 35 1 6.8570 -3.1026 0.1752 36 1 8.7447 -2.7181 1.6919 37 1 7.8665 -1.1809 2.1066 38 1 9.3130 -0.3589 4.6740 39 1 5.3875 -4.0148 2.5100 40 1 6.9614 -4.7568 1.9822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043102710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:55 Heat of formation + Delta-G solvation = 52.379348 kcal Electronic energy + Delta-G solvation = -22122.436943 eV Core-core repulsion = 18939.382692 eV Total energy + Delta-G solvation = -3183.054252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42542 -40.91905 -39.09328 -35.66349 -34.14300 -33.64783 -32.30640 -29.89615 -28.60877 -27.87674 -27.24237 -26.59445 -24.81205 -22.58282 -21.35744 -20.54968 -19.72139 -18.90599 -18.44878 -17.70432 -16.89420 -16.51481 -16.14190 -15.67021 -15.54822 -15.13314 -14.60262 -14.32117 -14.14975 -14.11669 -13.91431 -13.81431 -13.52829 -13.22459 -13.14939 -13.09706 -12.90884 -12.82959 -12.74296 -12.43071 -12.28921 -12.01277 -11.64781 -11.48822 -11.25108 -10.79930 -9.67057 -9.64027 -8.87973 -8.86390 -7.86915 -5.21208 0.87629 1.24256 1.49052 1.49855 1.58111 1.82141 2.00828 2.48477 2.54780 3.26512 3.41481 3.62782 3.83433 4.02472 4.19966 4.33469 4.35641 4.41271 4.49541 4.64258 4.69392 4.75178 4.82489 4.84608 4.85809 4.86721 5.04446 5.07159 5.14001 5.20259 5.23932 5.30937 5.45425 5.48777 5.65991 5.91596 5.96494 6.04395 6.38492 6.59330 6.93297 6.98805 7.62634 8.55853 9.28823 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.005012 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.989964 B = 5585.402757 C = 5998.354459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.047 3.953 3 C -0.215 4.215 4 C -0.119 4.119 5 C -0.087 4.087 6 C -0.065 4.065 7 C 0.589 3.411 8 O -0.578 6.578 9 N -0.564 5.564 10 C 0.095 3.905 11 C 0.101 3.899 12 C 0.155 3.845 13 N -0.625 5.625 14 C -0.231 4.231 15 H 0.083 0.917 16 C -0.054 4.054 17 N -0.946 5.946 18 Si 0.970 3.030 19 H -0.292 1.292 20 H -0.296 1.296 21 H -0.268 1.268 22 C 0.114 3.886 23 N -0.524 5.524 24 H 0.424 0.576 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.031 0.969 37 H 0.053 0.947 38 H 0.248 0.752 39 H 0.055 0.945 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 3.157 -7.279 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C -0.239 4.239 4 C -0.127 4.127 5 C -0.145 4.145 6 C -0.178 4.178 7 C 0.377 3.623 8 O -0.458 6.458 9 N -0.293 5.293 10 C -0.047 4.047 11 C -0.004 4.004 12 C 0.028 3.972 13 N -0.352 5.352 14 C -0.359 4.359 15 H 0.101 0.899 16 C -0.248 4.248 17 N -0.595 5.595 18 Si 0.799 3.201 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.192 1.192 22 C -0.012 4.012 23 N -0.121 5.121 24 H 0.262 0.738 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.178 0.822 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.109 2.823 -7.486 17.986 hybrid contribution 0.853 -0.383 1.058 1.411 sum -15.256 2.440 -6.428 16.734 Atomic orbital electron populations 1.20498 0.84717 1.04760 1.04030 1.21050 0.95139 0.85188 1.05535 1.20749 0.90802 0.99181 1.13129 1.20038 0.96722 0.90555 1.05385 1.20270 0.93540 0.98688 1.01965 1.19603 0.84210 0.93914 1.20112 1.17522 0.82711 0.79530 0.82497 1.90753 1.71089 1.51106 1.32838 1.47401 1.31458 1.39622 1.10843 1.21756 0.99574 0.95721 0.87669 1.22741 0.88131 0.90598 0.98943 1.22501 0.92335 0.98204 0.84118 1.46334 1.50358 1.37744 1.00780 1.19283 1.21542 1.13939 0.81106 0.89899 1.25458 0.99129 0.98712 1.01474 1.69984 1.31567 1.23292 1.34638 0.85208 0.77947 0.76347 0.80581 1.21946 1.22218 1.19240 1.23102 0.96659 0.93534 0.87909 1.41698 1.03768 1.09452 1.57180 0.73781 0.89568 0.88338 0.90461 0.82215 0.91408 0.89593 0.93928 0.93926 0.91228 0.89153 0.88008 0.95104 0.92895 0.94280 0.92660 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.41 71.23 0.74 -0.18 16 2 C 0.05 0.96 7.13 41.34 0.29 1.26 16 3 C -0.22 -4.99 10.66 22.01 0.23 -4.75 16 4 C -0.12 -3.45 6.01 -19.56 -0.12 -3.57 16 5 C -0.09 -2.43 10.20 71.24 0.73 -1.71 16 6 C -0.06 -2.03 5.11 40.35 0.21 -1.83 16 7 C 0.59 22.01 7.16 86.45 0.62 22.63 16 8 O -0.58 -24.72 16.58 -4.32 -0.07 -24.80 16 9 N -0.56 -21.47 3.09 -833.03 -2.58 -24.05 16 10 C 0.10 3.61 8.97 127.77 1.15 4.76 16 11 C 0.10 4.04 4.53 46.75 0.21 4.25 16 12 C 0.15 7.30 6.77 86.48 0.59 7.88 16 13 N -0.62 -30.33 2.27 -717.30 -1.63 -31.95 16 14 C -0.23 -12.18 9.70 84.04 0.81 -11.36 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 17 N -0.95 -54.64 11.38 21.65 0.25 -54.39 16 18 Si 0.97 44.00 29.55 68.60 2.03 46.02 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C 0.11 4.52 8.38 86.48 0.72 5.25 16 23 N -0.52 -12.70 6.10 -171.93 -1.05 -13.75 16 24 H 0.42 8.40 8.96 -92.71 -0.83 7.57 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.37 6.71 -2.38 -0.02 1.36 16 32 H 0.04 1.69 7.08 -2.39 -0.02 1.67 16 33 H 0.07 2.33 6.97 -2.39 -0.02 2.31 16 34 H 0.09 3.98 5.14 -2.39 -0.01 3.96 16 35 H 0.10 3.98 7.20 -2.39 -0.02 3.96 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.05 2.79 6.90 -2.38 -0.02 2.77 16 38 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -66.96 329.13 3.83 -63.13 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.22 Total: 19.59 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.65 Total: 20.19 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -5.01 Total: -124.14 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -66.96 3.83 -63.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043102710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.514 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds