Wall clock time and date at job start Mon Mar 30 2020 01:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36773 * 125.80000 * 2 1 4 4 C 1.47264 * 126.94185 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99871 * 7.22205 * 4 3 2 6 6 N 1.34779 * 120.00095 * 187.22423 * 4 3 2 7 7 C 1.46493 * 119.99833 * 6.42768 * 6 4 3 8 8 C 1.46501 * 119.99992 * 186.42679 * 6 4 3 9 9 C 1.53494 * 114.20635 * 240.00073 * 8 6 4 10 10 N 1.47066 * 87.98397 * 220.14867 * 9 8 6 11 11 C 1.36937 * 136.05377 * 207.08361 * 10 9 8 12 12 H 1.08000 * 120.00466 * 354.73888 * 11 10 9 13 13 C 1.38816 * 119.99537 * 174.73408 * 11 10 9 14 14 N 1.31622 * 119.99747 * 183.91698 * 13 11 10 15 15 Si 1.86797 * 120.00362 * 3.91473 * 13 11 10 16 16 H 1.48498 * 109.47289 * 174.57275 * 15 13 11 17 17 H 1.48500 * 109.47069 * 294.57870 * 15 13 11 18 18 H 1.48497 * 109.46760 * 54.57332 * 15 13 11 19 19 C 1.47066 * 87.88570 * 27.33949 * 10 9 8 20 20 C 1.46681 * 106.11631 * 179.72054 * 3 2 1 21 21 C 1.34482 * 106.33214 * 0.24032 * 20 3 2 22 22 N 1.34660 * 125.80518 * 180.12627 * 2 1 3 23 23 C 1.46493 * 124.84920 * 0.03091 * 22 2 1 24 24 H 1.09003 * 109.47061 * 90.00247 * 1 2 3 25 25 H 1.09000 * 109.46924 * 210.00004 * 1 2 3 26 26 H 1.09001 * 109.47252 * 330.00176 * 1 2 3 27 27 H 1.09000 * 109.47216 * 275.61187 * 7 6 4 28 28 H 1.08995 * 109.47264 * 35.61572 * 7 6 4 29 29 H 1.09001 * 109.46972 * 155.61689 * 7 6 4 30 30 H 1.09008 * 113.28197 * 13.06338 * 8 6 4 31 31 H 1.09005 * 113.46950 * 105.36862 * 9 8 6 32 32 H 1.08996 * 113.46947 * 334.92986 * 9 8 6 33 33 H 0.97006 * 120.00124 * 5.00607 * 14 13 11 34 34 H 1.08999 * 113.46157 * 87.43716 * 19 10 9 35 35 H 1.08998 * 113.46581 * 217.87490 * 19 10 9 36 36 H 1.08004 * 126.83686 * 180.25990 * 20 3 2 37 37 H 1.08003 * 125.57013 * 180.02562 * 21 20 3 38 38 H 1.09003 * 109.47100 * 270.28198 * 23 22 2 39 39 H 1.08999 * 109.47595 * 30.28325 * 23 22 2 40 40 H 1.09003 * 109.47080 * 150.28195 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6917 2.7864 0.1314 6 7 2.7761 3.5027 -0.1472 7 6 4.1725 3.1767 -0.4466 8 6 2.3642 4.9017 -0.0074 9 6 2.6008 5.7557 -1.2607 10 7 3.0340 6.8453 -0.3730 11 6 3.0564 8.2133 -0.4297 12 1 2.7640 8.7211 -1.3370 13 6 3.4549 8.9474 0.6790 14 7 3.4031 10.2623 0.6509 15 14 4.0645 8.0693 2.2108 16 1 4.5491 9.0699 3.1953 17 1 2.9531 7.2858 2.8076 18 1 5.1759 7.1540 1.8473 19 6 3.4386 5.8190 0.5995 20 6 3.6881 0.6153 0.0069 21 6 3.6095 -0.7273 0.0050 22 7 2.2948 -1.0921 -0.0024 23 6 1.8095 -2.4743 -0.0061 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 4.7015 2.9582 0.4811 28 1 4.2101 2.3052 -1.1002 29 1 4.6450 4.0241 -0.9433 30 1 1.3732 5.0172 0.4317 31 1 1.6873 5.9813 -1.8110 32 1 3.3964 5.3754 -1.9013 33 1 3.0192 10.7164 -0.1156 34 1 4.4550 5.4554 0.4492 35 1 3.2389 6.0986 1.6339 36 1 4.5889 1.2111 0.0127 37 1 4.4498 -1.4058 0.0091 38 1 1.6839 -2.8181 1.0207 39 1 0.8520 -2.5219 -0.5248 40 1 2.5315 -3.1115 -0.5169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043794004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:40 Heat of formation + Delta-G solvation = 102.170017 kcal Electronic energy + Delta-G solvation = -21702.209375 eV Core-core repulsion = 18521.314209 eV Total energy + Delta-G solvation = -3180.895166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52376 -39.60603 -37.74203 -34.71442 -32.94090 -32.11019 -31.66957 -28.30584 -27.15229 -26.66433 -26.08923 -25.29749 -23.14015 -21.41355 -20.33890 -19.13607 -18.36624 -17.47328 -17.07693 -16.24547 -15.87873 -15.77745 -15.09740 -14.96273 -14.27416 -13.77004 -13.66720 -13.30108 -13.13199 -13.04832 -12.95644 -12.79576 -12.66537 -12.23547 -12.00013 -11.84454 -11.66685 -11.42097 -11.26689 -11.21290 -10.49202 -10.33266 -9.52575 -9.25191 -9.10619 -8.88887 -8.69807 -8.34775 -8.01986 -7.11809 -6.27976 -3.20767 1.75256 2.33164 2.62047 3.38507 3.44590 3.48346 3.67924 3.71291 4.40306 4.60774 4.62552 4.74880 4.76431 4.87564 4.98753 5.06279 5.13710 5.22987 5.37426 5.44027 5.46239 5.53457 5.68116 5.76672 5.79090 5.83681 5.95953 6.01730 6.13488 6.23160 6.31581 6.46022 6.65111 6.68504 6.91327 7.07735 7.10231 7.17685 7.81183 8.26391 8.58949 9.00449 9.52365 10.37713 11.23738 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037219 B = 0.004028 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.115563 B = 6950.321887 C = 7170.743429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.101 3.899 3 C -0.229 4.229 4 C 0.590 3.410 5 O -0.553 6.553 6 N -0.596 5.596 7 C 0.069 3.931 8 C 0.106 3.894 9 C 0.111 3.889 10 N -0.622 5.622 11 C -0.300 4.300 12 H 0.084 0.916 13 C -0.024 4.024 14 N -0.934 5.934 15 Si 1.073 2.927 16 H -0.295 1.295 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.083 3.917 20 C -0.177 4.177 21 C -0.025 4.025 22 N -0.448 5.448 23 C 0.068 3.932 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -28.554 -1.673 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.016 4.016 3 C -0.239 4.239 4 C 0.380 3.620 5 O -0.433 6.433 6 N -0.328 5.328 7 C -0.074 4.074 8 C 0.002 3.998 9 C -0.016 4.016 10 N -0.350 5.350 11 C -0.426 4.426 12 H 0.102 0.898 13 C -0.223 4.223 14 N -0.577 5.577 15 Si 0.906 3.094 16 H -0.222 1.222 17 H -0.219 1.219 18 H -0.217 1.217 19 C -0.043 4.043 20 C -0.201 4.201 21 C -0.151 4.151 22 N -0.125 5.125 23 C -0.073 4.073 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.010 -28.194 -0.127 28.195 hybrid contribution -0.240 -0.389 -1.665 1.727 sum -0.250 -28.583 -1.792 28.640 Atomic orbital electron populations 1.20579 0.87199 1.04241 1.03224 1.20310 0.93710 0.85138 1.02415 1.20175 0.93240 0.92043 1.18440 1.17392 0.84957 0.83924 0.75691 1.90701 1.16880 1.84156 1.51607 1.47604 1.09075 1.06080 1.69993 1.22308 0.82283 1.02157 1.00648 1.23461 1.00127 0.77074 0.99157 1.22762 0.97658 0.87507 0.93705 1.45789 1.72266 1.00295 1.16683 1.20152 1.44819 0.77121 1.00556 0.89829 1.25715 1.00108 0.95930 1.00517 1.70920 1.47042 1.06542 1.33168 0.83675 0.76086 0.73521 0.76072 1.22243 1.21893 1.21683 1.23276 0.96175 0.88754 0.96138 1.22761 0.96587 0.93431 1.07285 1.21756 0.85270 0.96389 1.11672 1.43558 1.06111 1.05976 1.56853 1.22061 1.01631 0.80271 1.03370 0.90720 0.92137 0.87698 0.92530 0.90082 0.90760 0.85861 0.93232 0.94324 0.92913 0.93561 0.92406 0.82190 0.81767 0.90827 0.89753 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.34 36.00 0.34 -0.67 16 2 C 0.10 1.22 6.89 -81.88 -0.56 0.65 16 3 C -0.23 -3.24 6.04 -103.35 -0.62 -3.87 16 4 C 0.59 10.19 7.65 -12.59 -0.10 10.10 16 5 O -0.55 -11.01 14.34 5.25 0.08 -10.94 16 6 N -0.60 -10.04 3.11 -174.89 -0.54 -10.59 16 7 C 0.07 0.90 7.46 59.84 0.45 1.35 16 8 C 0.11 2.12 4.54 -67.68 -0.31 1.81 16 9 C 0.11 2.37 8.23 -8.51 -0.07 2.30 16 10 N -0.62 -15.98 3.69 -184.62 -0.68 -16.66 16 11 C -0.30 -8.93 11.09 -15.06 -0.17 -9.09 16 12 H 0.08 2.60 8.05 -52.49 -0.42 2.18 16 13 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 14 N -0.93 -30.08 13.70 55.49 0.76 -29.32 16 15 Si 1.07 27.61 25.10 -169.99 -4.27 23.34 16 16 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 17 H -0.29 -7.14 6.32 56.52 0.36 -6.79 16 18 H -0.29 -6.92 6.69 56.52 0.38 -6.55 16 19 C 0.08 1.83 5.34 -8.37 -0.04 1.79 16 20 C -0.18 -1.97 8.84 -37.50 -0.33 -2.30 16 21 C -0.03 -0.23 11.34 -16.83 -0.19 -0.42 16 22 N -0.45 -4.15 3.09 -119.89 -0.37 -4.52 16 23 C 0.07 0.33 10.60 59.84 0.63 0.97 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.47 7.59 -51.93 -0.39 0.07 16 26 H 0.10 1.38 6.35 -51.93 -0.33 1.05 16 27 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 28 H 0.08 0.90 5.36 -51.93 -0.28 0.62 16 29 H 0.07 1.01 5.96 -51.93 -0.31 0.70 16 30 H 0.12 2.66 7.35 -51.92 -0.38 2.27 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.77 7.05 -51.93 -0.37 0.40 16 33 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 34 H 0.05 0.96 6.38 -51.93 -0.33 0.63 16 35 H 0.06 1.35 4.00 -51.93 -0.21 1.14 16 36 H 0.16 1.52 4.82 -52.48 -0.25 1.26 16 37 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.33 7.51 -51.93 -0.39 -0.06 16 40 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -36.39 313.09 -6.76 -43.15 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.38 Total: -0.96 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.07 Total: 1.77 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.84 Total: -61.09 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 27.61 SS G_CDS: -4.27 Total: 23.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.39 -6.76 -43.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043794004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.323 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds