Wall clock time and date at job start Mon Mar 30 2020 01:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36773 * 125.80000 * 2 1 4 4 C 1.47264 * 126.94185 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99871 * 7.22205 * 4 3 2 6 6 N 1.34779 * 120.00095 * 187.22423 * 4 3 2 7 7 C 1.46493 * 119.99833 * 6.42768 * 6 4 3 8 8 C 1.46501 * 119.99992 * 186.42679 * 6 4 3 9 9 C 1.53494 * 114.20635 * 240.00073 * 8 6 4 10 10 N 1.47066 * 87.98397 * 220.14867 * 9 8 6 11 11 C 1.36937 * 136.05377 * 207.08361 * 10 9 8 12 12 H 1.08000 * 120.00466 * 354.73888 * 11 10 9 13 13 C 1.38816 * 119.99537 * 174.73408 * 11 10 9 14 14 N 1.31622 * 119.99747 * 183.91698 * 13 11 10 15 15 Si 1.86797 * 120.00362 * 3.91473 * 13 11 10 16 16 H 1.48498 * 109.47289 * 174.57275 * 15 13 11 17 17 H 1.48500 * 109.47069 * 294.57870 * 15 13 11 18 18 H 1.48497 * 109.46760 * 54.57332 * 15 13 11 19 19 C 1.47066 * 87.88570 * 27.33949 * 10 9 8 20 20 C 1.46681 * 106.11631 * 179.72054 * 3 2 1 21 21 C 1.34482 * 106.33214 * 0.24032 * 20 3 2 22 22 N 1.34660 * 125.80518 * 180.12627 * 2 1 3 23 23 C 1.46493 * 124.84920 * 0.03091 * 22 2 1 24 24 H 1.09003 * 109.47061 * 90.00247 * 1 2 3 25 25 H 1.09000 * 109.46924 * 210.00004 * 1 2 3 26 26 H 1.09001 * 109.47252 * 330.00176 * 1 2 3 27 27 H 1.09000 * 109.47216 * 275.61187 * 7 6 4 28 28 H 1.08995 * 109.47264 * 35.61572 * 7 6 4 29 29 H 1.09001 * 109.46972 * 155.61689 * 7 6 4 30 30 H 1.09008 * 113.28197 * 13.06338 * 8 6 4 31 31 H 1.09005 * 113.46950 * 105.36862 * 9 8 6 32 32 H 1.08996 * 113.46947 * 334.92986 * 9 8 6 33 33 H 0.97006 * 120.00124 * 5.00607 * 14 13 11 34 34 H 1.08999 * 113.46157 * 87.43716 * 19 10 9 35 35 H 1.08998 * 113.46581 * 217.87490 * 19 10 9 36 36 H 1.08004 * 126.83686 * 180.25990 * 20 3 2 37 37 H 1.08003 * 125.57013 * 180.02562 * 21 20 3 38 38 H 1.09003 * 109.47100 * 270.28198 * 23 22 2 39 39 H 1.08999 * 109.47595 * 30.28325 * 23 22 2 40 40 H 1.09003 * 109.47080 * 150.28195 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6917 2.7864 0.1314 6 7 2.7761 3.5027 -0.1472 7 6 4.1725 3.1767 -0.4466 8 6 2.3642 4.9017 -0.0074 9 6 2.6008 5.7557 -1.2607 10 7 3.0340 6.8453 -0.3730 11 6 3.0564 8.2133 -0.4297 12 1 2.7640 8.7211 -1.3370 13 6 3.4549 8.9474 0.6790 14 7 3.4031 10.2623 0.6509 15 14 4.0645 8.0693 2.2108 16 1 4.5491 9.0699 3.1953 17 1 2.9531 7.2858 2.8076 18 1 5.1759 7.1540 1.8473 19 6 3.4386 5.8190 0.5995 20 6 3.6881 0.6153 0.0069 21 6 3.6095 -0.7273 0.0050 22 7 2.2948 -1.0921 -0.0024 23 6 1.8095 -2.4743 -0.0061 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 4.7015 2.9582 0.4811 28 1 4.2101 2.3052 -1.1002 29 1 4.6450 4.0241 -0.9433 30 1 1.3732 5.0172 0.4317 31 1 1.6873 5.9813 -1.8110 32 1 3.3964 5.3754 -1.9013 33 1 3.0192 10.7164 -0.1156 34 1 4.4550 5.4554 0.4492 35 1 3.2389 6.0986 1.6339 36 1 4.5889 1.2111 0.0127 37 1 4.4498 -1.4058 0.0091 38 1 1.6839 -2.8181 1.0207 39 1 0.8520 -2.5219 -0.5248 40 1 2.5315 -3.1115 -0.5169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043794004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:39 Heat of formation + Delta-G solvation = 76.389282 kcal Electronic energy + Delta-G solvation = -21703.327311 eV Core-core repulsion = 18521.314209 eV Total energy + Delta-G solvation = -3182.013103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34486 -41.07226 -39.27076 -36.10833 -34.51791 -33.48314 -32.48180 -30.06386 -28.26362 -27.61687 -27.10656 -26.90662 -24.70085 -22.72240 -21.47011 -20.69947 -19.57792 -19.34242 -18.09790 -17.58483 -17.32347 -16.74206 -16.42963 -16.19643 -15.55403 -15.32709 -15.10751 -14.69802 -14.07678 -13.99051 -13.87703 -13.81189 -13.60522 -13.47078 -13.28619 -13.21857 -13.19430 -12.81041 -12.44829 -12.36200 -12.25447 -12.14451 -11.38067 -11.11073 -11.09924 -10.76106 -9.62257 -9.44800 -9.24309 -9.01048 -8.67663 -5.52562 0.75951 1.37492 1.47146 1.57806 1.67456 1.86361 2.20229 2.51675 2.54500 3.00282 3.18371 3.56781 3.85107 3.90916 4.03729 4.10064 4.19366 4.28159 4.34289 4.46169 4.47833 4.50757 4.54386 4.65861 4.68053 4.73496 4.75963 4.78034 4.93654 5.00949 5.06413 5.11759 5.14227 5.29910 5.65319 5.85530 5.90332 6.15888 6.42327 6.57372 6.65591 7.26682 7.31192 8.19840 8.86462 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037219 B = 0.004028 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.115563 B = 6950.321887 C = 7170.743429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.092 3.908 3 C -0.267 4.267 4 C 0.582 3.418 5 O -0.594 6.594 6 N -0.597 5.597 7 C 0.065 3.935 8 C 0.126 3.874 9 C 0.114 3.886 10 N -0.653 5.653 11 C -0.292 4.292 12 H 0.052 0.948 13 C -0.081 4.081 14 N -0.968 5.968 15 Si 1.110 2.890 16 H -0.300 1.300 17 H -0.277 1.277 18 H -0.256 1.256 19 C 0.084 3.916 20 C -0.193 4.193 21 C -0.010 4.010 22 N -0.442 5.442 23 C 0.059 3.941 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.247 0.753 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.175 0.825 37 H 0.205 0.795 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -33.163 -1.255 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C -0.277 4.277 4 C 0.375 3.625 5 O -0.477 6.477 6 N -0.328 5.328 7 C -0.077 4.077 8 C 0.021 3.979 9 C -0.013 4.013 10 N -0.382 5.382 11 C -0.419 4.419 12 H 0.070 0.930 13 C -0.273 4.273 14 N -0.613 5.613 15 Si 0.937 3.063 16 H -0.228 1.228 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.041 4.041 20 C -0.216 4.216 21 C -0.137 4.137 22 N -0.118 5.118 23 C -0.081 4.081 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.192 0.808 37 H 0.221 0.779 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.785 -32.894 0.252 32.944 hybrid contribution -0.861 0.884 -1.908 2.272 sum 0.924 -32.010 -1.656 32.066 Atomic orbital electron populations 1.20511 0.86878 1.04100 1.03420 1.20456 0.94285 0.85855 1.02052 1.20107 0.95524 0.90507 1.21596 1.17977 0.84409 0.85332 0.74756 1.90675 1.18607 1.84936 1.53468 1.47589 1.10758 1.04358 1.70094 1.22582 0.79981 1.02915 1.02186 1.22786 0.98528 0.79135 0.97501 1.22918 0.97878 0.86312 0.94199 1.45784 1.73354 0.99809 1.19230 1.20013 1.43105 0.79532 0.99259 0.92965 1.27072 1.00708 0.95874 1.03651 1.71020 1.49351 1.07869 1.33032 0.83253 0.77107 0.73255 0.72729 1.22821 1.20445 1.18099 1.23434 0.97989 0.87742 0.94945 1.22936 0.95597 0.94601 1.08423 1.22376 0.86047 0.96323 1.08905 1.43867 1.06015 1.06908 1.54978 1.22426 1.02868 0.78023 1.04807 0.90336 0.89184 0.90860 0.90504 0.87819 0.91094 0.88085 0.94119 0.91754 0.94387 0.90759 0.93196 0.80809 0.77863 0.89505 0.88897 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.34 71.23 0.67 -1.18 16 2 C 0.09 2.05 6.89 41.78 0.29 2.33 16 3 C -0.27 -7.12 6.04 -19.04 -0.12 -7.24 16 4 C 0.58 19.91 7.65 86.62 0.66 20.57 16 5 O -0.59 -24.34 14.34 -4.12 -0.06 -24.40 16 6 N -0.60 -19.32 3.11 -825.48 -2.57 -21.89 16 7 C 0.06 1.49 7.46 127.77 0.95 2.44 16 8 C 0.13 4.98 4.54 45.55 0.21 5.19 16 9 C 0.11 4.79 8.23 83.18 0.68 5.47 16 10 N -0.65 -33.48 3.69 -738.02 -2.72 -36.20 16 11 C -0.29 -17.77 11.09 84.03 0.93 -16.84 16 12 H 0.05 3.41 8.05 -2.91 -0.02 3.39 16 13 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 14 N -0.97 -64.26 13.70 21.65 0.30 -63.96 16 15 Si 1.11 55.30 25.10 68.60 1.72 57.02 16 16 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 17 H -0.28 -13.07 6.32 99.48 0.63 -12.44 16 18 H -0.26 -11.24 6.69 99.48 0.67 -10.58 16 19 C 0.08 3.58 5.34 83.27 0.44 4.03 16 20 C -0.19 -3.63 8.84 23.62 0.21 -3.42 16 21 C -0.01 -0.14 11.34 83.12 0.94 0.80 16 22 N -0.44 -6.48 3.09 -533.21 -1.65 -8.12 16 23 C 0.06 0.30 10.60 127.77 1.35 1.66 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.09 1.19 7.59 -2.39 -0.02 1.17 16 26 H 0.07 1.97 6.35 -2.39 -0.02 1.96 16 27 H 0.08 1.48 7.32 -2.39 -0.02 1.46 16 28 H 0.10 1.95 5.36 -2.39 -0.01 1.94 16 29 H 0.07 1.69 5.96 -2.39 -0.01 1.67 16 30 H 0.10 4.46 7.35 -2.38 -0.02 4.44 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 2.42 7.05 -2.39 -0.02 2.41 16 33 H 0.25 16.46 8.73 -92.70 -0.81 15.65 16 34 H 0.07 2.80 6.38 -2.39 -0.02 2.79 16 35 H 0.05 2.23 4.00 -2.39 -0.01 2.22 16 36 H 0.17 2.58 4.82 -2.91 -0.01 2.57 16 37 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 0.36 7.51 -2.39 -0.02 0.34 16 40 H 0.11 0.06 8.13 -2.39 -0.02 0.04 16 Total: -1.00 -82.76 313.09 3.61 -79.15 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.90 Total: 9.13 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 7.69 Total: 9.26 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -6.64 Total: -130.17 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 55.30 SS G_CDS: 1.72 Total: 57.02 kcal Total: -82.76 3.61 -79.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043794004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.542 kcal (2) G-P(sol) polarization free energy of solvation -82.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds