Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34491 * 125.56963 * 2 1 4 4 C 1.46689 * 106.32918 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93992 * 179.97438 * 4 3 2 6 6 O 1.21623 * 119.99837 * 215.12596 * 5 4 3 7 7 N 1.34773 * 119.99747 * 35.12017 * 5 4 3 8 8 C 1.46500 * 120.00678 * 355.59959 * 7 5 4 9 9 C 1.46504 * 119.99402 * 175.59634 * 7 5 4 10 10 C 1.53494 * 114.20523 * 120.00440 * 9 7 5 11 11 N 1.47075 * 87.98769 * 87.71690 * 10 9 7 12 12 C 1.36935 * 136.05681 * 207.09246 * 11 10 9 13 13 H 1.07998 * 119.99918 * 5.05448 * 12 11 10 14 14 C 1.38810 * 119.99636 * 185.06751 * 12 11 10 15 15 N 1.31617 * 120.00341 * 5.04688 * 14 12 11 16 16 Si 1.86804 * 119.99625 * 185.05105 * 14 12 11 17 17 H 1.48504 * 109.46849 * 264.99571 * 16 14 12 18 18 H 1.48494 * 109.47184 * 24.99586 * 16 14 12 19 19 H 1.48505 * 109.47099 * 144.99747 * 16 14 12 20 20 C 1.47065 * 87.88393 * 27.33888 * 11 10 9 21 21 C 1.36769 * 106.11548 * 0.23972 * 4 3 2 22 22 C 1.50704 * 125.79794 * 179.72157 * 21 4 3 23 23 N 1.34660 * 108.39869 * 359.61208 * 21 4 3 24 24 H 0.96998 * 124.84820 * 180.13640 * 23 21 4 25 25 H 1.08999 * 109.46765 * 89.99773 * 1 2 3 26 26 H 1.08994 * 109.47163 * 209.99389 * 1 2 3 27 27 H 1.08995 * 109.46944 * 330.00165 * 1 2 3 28 28 H 1.08002 * 126.83417 * 359.95789 * 3 2 1 29 29 H 1.09001 * 109.46604 * 275.27691 * 8 7 5 30 30 H 1.09005 * 109.47055 * 35.26992 * 8 7 5 31 31 H 1.08995 * 109.47476 * 155.27161 * 8 7 5 32 32 H 1.08996 * 113.28518 * 346.93385 * 9 7 5 33 33 H 1.08993 * 113.46857 * 332.93420 * 10 9 7 34 34 H 1.09000 * 113.46655 * 202.48997 * 10 9 7 35 35 H 0.97001 * 119.99828 * 180.02562 * 15 14 12 36 36 H 1.09002 * 113.46565 * 87.43758 * 20 11 10 37 37 H 1.08997 * 113.47026 * 217.88245 * 20 11 10 38 38 H 1.08994 * 109.46730 * 90.00608 * 22 21 4 39 39 H 1.09001 * 109.46935 * 210.00186 * 22 21 4 40 40 H 1.09001 * 109.47031 * 330.00275 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 0.0006 5 6 4.8978 1.4302 0.0003 6 8 5.8826 1.0525 -0.6052 7 7 4.9261 2.5989 0.6710 8 6 3.7122 3.1009 1.3196 9 6 6.1709 3.3672 0.7515 10 6 6.0806 4.7765 0.1501 11 7 5.6155 5.2504 1.4625 12 6 4.8350 6.2786 1.9196 13 1 4.3341 6.9293 1.2183 14 6 4.6880 6.4844 3.2845 15 7 5.3758 5.7557 4.1378 16 14 3.5138 7.7957 3.9101 17 1 4.2637 9.0528 4.1605 18 1 2.4599 8.0421 2.8934 19 1 2.8846 7.3346 5.1737 20 6 6.3626 4.1379 2.0681 21 6 3.5998 -0.7551 -0.0045 22 6 4.7722 -1.7019 -0.0119 23 7 2.3007 -1.1098 0.0005 24 1 1.9758 -2.0238 0.0004 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.9629 2.1234 -0.0006 29 1 3.1116 3.6477 0.5928 30 1 3.1356 2.2624 1.7102 31 1 3.9863 3.7661 2.1385 32 1 7.0474 2.8017 0.4354 33 1 5.3297 4.8663 -0.6348 34 1 7.0474 5.1867 -0.1417 35 1 5.2728 5.8993 5.0916 36 1 7.4038 4.3796 2.2818 37 1 5.8520 3.6834 2.9171 38 1 5.0580 -1.9342 1.0139 39 1 4.4941 -2.6205 -0.5286 40 1 5.6125 -1.2357 -0.5265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043978824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = 76.091559 kcal Electronic energy + Delta-G solvation = -22005.268046 eV Core-core repulsion = 18823.242033 eV Total energy + Delta-G solvation = -3182.026013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26062 -39.30326 -37.37470 -33.92645 -32.60651 -32.11547 -30.75673 -29.18592 -27.80501 -26.14603 -24.84442 -24.49734 -23.30386 -21.76005 -20.37650 -19.07878 -17.84375 -16.97541 -16.57579 -15.85760 -15.20256 -15.02350 -14.68242 -14.40069 -13.74991 -13.65752 -13.58956 -13.30504 -13.15230 -12.72771 -12.56851 -12.34394 -12.24090 -12.11292 -12.04326 -11.43490 -11.39058 -11.26181 -10.85938 -10.77481 -10.58650 -10.03891 -9.81339 -9.36458 -9.35081 -8.77975 -8.58772 -7.96893 -7.71605 -6.86533 -5.78181 -3.09011 2.02831 2.51747 3.13510 3.38387 3.44256 3.45923 3.65600 3.86313 4.46246 4.80982 4.90615 5.09650 5.23512 5.26148 5.37442 5.41070 5.49267 5.57927 5.62567 5.70889 5.74474 5.98937 6.00185 6.09045 6.23686 6.25931 6.37021 6.39728 6.57592 6.69222 6.85047 6.91280 7.05503 7.10785 7.20576 7.42558 7.51135 7.58061 7.95467 8.20276 8.84516 9.03736 9.69563 10.65415 11.39864 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.005173 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.210521 B = 5411.696344 C = 6344.074685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.001 3.999 3 C -0.158 4.158 4 C -0.216 4.216 5 C 0.587 3.413 6 O -0.564 6.564 7 N -0.569 5.569 8 C 0.081 3.919 9 C 0.085 3.915 10 C 0.104 3.896 11 N -0.606 5.606 12 C -0.214 4.214 13 H 0.080 0.920 14 C -0.007 4.007 15 N -0.919 5.919 16 Si 0.908 3.092 17 H -0.290 1.290 18 H -0.280 1.280 19 H -0.290 1.290 20 C 0.151 3.849 21 C 0.089 3.911 22 C -0.095 4.095 23 N -0.552 5.552 24 H 0.410 0.590 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.254 0.746 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 -14.724 -6.765 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.182 4.182 4 C -0.226 4.226 5 C 0.377 3.623 6 O -0.445 6.445 7 N -0.298 5.298 8 C -0.061 4.061 9 C -0.021 4.021 10 C -0.024 4.024 11 N -0.332 5.332 12 C -0.342 4.342 13 H 0.098 0.902 14 C -0.204 4.204 15 N -0.566 5.566 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.205 1.205 19 H -0.217 1.217 20 C 0.024 3.976 21 C -0.028 4.028 22 C -0.153 4.153 23 N -0.149 5.149 24 H 0.246 0.754 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.166 0.834 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.567 -14.772 -6.803 17.938 hybrid contribution -0.756 0.616 0.497 1.095 sum -8.324 -14.157 -6.306 17.591 Atomic orbital electron populations 1.20293 0.87953 1.03216 1.02455 1.20183 0.93316 0.86032 1.11224 1.22051 0.90677 0.97978 1.07519 1.20137 0.93364 0.92100 1.16965 1.17419 0.86312 0.80347 0.78233 1.90673 1.36611 1.72405 1.44826 1.47144 1.11111 1.20146 1.51419 1.22071 0.85623 0.99252 0.99197 1.22670 0.86269 0.91929 1.01203 1.22854 0.97192 0.91334 0.90996 1.45819 1.54473 1.31539 1.01404 1.18925 1.19070 1.05600 0.90560 0.90200 1.24778 1.00217 0.99644 0.95715 1.69844 1.43215 1.42244 1.01342 0.86156 0.80445 0.81190 0.78328 1.21738 1.20533 1.21658 1.22433 0.95481 0.85995 0.93662 1.20138 0.84759 0.94068 1.03800 1.20536 0.95059 0.96629 1.03065 1.41428 1.05280 1.08461 1.59744 0.75386 0.91260 0.92033 0.89956 0.83367 0.93701 0.92319 0.87413 0.88439 0.94034 0.94151 0.93633 0.94267 0.91336 0.90872 0.91911 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.41 36.01 0.37 -0.27 16 2 C 0.00 0.01 7.13 -81.86 -0.58 -0.57 16 3 C -0.16 -2.28 8.63 -37.50 -0.32 -2.60 16 4 C -0.22 -3.56 5.53 -103.35 -0.57 -4.13 16 5 C 0.59 11.42 7.49 -12.59 -0.09 11.32 16 6 O -0.56 -11.99 14.95 5.26 0.08 -11.91 16 7 N -0.57 -11.35 3.12 -174.88 -0.55 -11.90 16 8 C 0.08 1.57 8.21 59.85 0.49 2.06 16 9 C 0.08 1.76 4.66 -67.67 -0.32 1.44 16 10 C 0.10 2.24 8.31 -8.50 -0.07 2.17 16 11 N -0.61 -15.20 2.47 -184.60 -0.46 -15.65 16 12 C -0.21 -5.80 10.18 -15.06 -0.15 -5.95 16 13 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 15 N -0.92 -26.55 11.72 55.49 0.65 -25.90 16 16 Si 0.91 21.59 29.56 -169.99 -5.02 16.56 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.15 3.56 6.28 -8.37 -0.05 3.51 16 21 C 0.09 1.20 7.17 -81.88 -0.59 0.62 16 22 C -0.10 -1.09 10.21 36.01 0.37 -0.72 16 23 N -0.55 -5.90 5.90 -5.42 -0.03 -5.93 16 24 H 0.41 2.89 8.96 -40.82 -0.37 2.53 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.15 2.08 6.35 -52.49 -0.33 1.75 16 29 H 0.04 0.84 7.34 -51.93 -0.38 0.45 16 30 H 0.06 1.02 5.80 -51.93 -0.30 0.72 16 31 H 0.11 2.48 5.10 -51.93 -0.26 2.22 16 32 H 0.10 1.97 7.32 -51.93 -0.38 1.59 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.76 6.71 -51.93 -0.35 1.41 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 1.39 6.53 -51.93 -0.34 1.06 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -32.40 324.13 -7.70 -40.10 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.64 Total: 3.16 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.61 Total: 6.59 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.38 Total: -59.38 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.40 -7.70 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043978824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.189 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds