Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34491 * 125.56963 * 2 1 4 4 C 1.46689 * 106.32918 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93992 * 179.97438 * 4 3 2 6 6 O 1.21623 * 119.99837 * 215.12596 * 5 4 3 7 7 N 1.34773 * 119.99747 * 35.12017 * 5 4 3 8 8 C 1.46500 * 120.00678 * 355.59959 * 7 5 4 9 9 C 1.46504 * 119.99402 * 175.59634 * 7 5 4 10 10 C 1.53494 * 114.20523 * 120.00440 * 9 7 5 11 11 N 1.47075 * 87.98769 * 87.71690 * 10 9 7 12 12 C 1.36935 * 136.05681 * 207.09246 * 11 10 9 13 13 H 1.07998 * 119.99918 * 5.05448 * 12 11 10 14 14 C 1.38810 * 119.99636 * 185.06751 * 12 11 10 15 15 N 1.31617 * 120.00341 * 5.04688 * 14 12 11 16 16 Si 1.86804 * 119.99625 * 185.05105 * 14 12 11 17 17 H 1.48504 * 109.46849 * 264.99571 * 16 14 12 18 18 H 1.48494 * 109.47184 * 24.99586 * 16 14 12 19 19 H 1.48505 * 109.47099 * 144.99747 * 16 14 12 20 20 C 1.47065 * 87.88393 * 27.33888 * 11 10 9 21 21 C 1.36769 * 106.11548 * 0.23972 * 4 3 2 22 22 C 1.50704 * 125.79794 * 179.72157 * 21 4 3 23 23 N 1.34660 * 108.39869 * 359.61208 * 21 4 3 24 24 H 0.96998 * 124.84820 * 180.13640 * 23 21 4 25 25 H 1.08999 * 109.46765 * 89.99773 * 1 2 3 26 26 H 1.08994 * 109.47163 * 209.99389 * 1 2 3 27 27 H 1.08995 * 109.46944 * 330.00165 * 1 2 3 28 28 H 1.08002 * 126.83417 * 359.95789 * 3 2 1 29 29 H 1.09001 * 109.46604 * 275.27691 * 8 7 5 30 30 H 1.09005 * 109.47055 * 35.26992 * 8 7 5 31 31 H 1.08995 * 109.47476 * 155.27161 * 8 7 5 32 32 H 1.08996 * 113.28518 * 346.93385 * 9 7 5 33 33 H 1.08993 * 113.46857 * 332.93420 * 10 9 7 34 34 H 1.09000 * 113.46655 * 202.48997 * 10 9 7 35 35 H 0.97001 * 119.99828 * 180.02562 * 15 14 12 36 36 H 1.09002 * 113.46565 * 87.43758 * 20 11 10 37 37 H 1.08997 * 113.47026 * 217.88245 * 20 11 10 38 38 H 1.08994 * 109.46730 * 90.00608 * 22 21 4 39 39 H 1.09001 * 109.46935 * 210.00186 * 22 21 4 40 40 H 1.09001 * 109.47031 * 330.00275 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 0.0006 5 6 4.8978 1.4302 0.0003 6 8 5.8826 1.0525 -0.6052 7 7 4.9261 2.5989 0.6710 8 6 3.7122 3.1009 1.3196 9 6 6.1709 3.3672 0.7515 10 6 6.0806 4.7765 0.1501 11 7 5.6155 5.2504 1.4625 12 6 4.8350 6.2786 1.9196 13 1 4.3341 6.9293 1.2183 14 6 4.6880 6.4844 3.2845 15 7 5.3758 5.7557 4.1378 16 14 3.5138 7.7957 3.9101 17 1 4.2637 9.0528 4.1605 18 1 2.4599 8.0421 2.8934 19 1 2.8846 7.3346 5.1737 20 6 6.3626 4.1379 2.0681 21 6 3.5998 -0.7551 -0.0045 22 6 4.7722 -1.7019 -0.0119 23 7 2.3007 -1.1098 0.0005 24 1 1.9758 -2.0238 0.0004 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.9629 2.1234 -0.0006 29 1 3.1116 3.6477 0.5928 30 1 3.1356 2.2624 1.7102 31 1 3.9863 3.7661 2.1385 32 1 7.0474 2.8017 0.4354 33 1 5.3297 4.8663 -0.6348 34 1 7.0474 5.1867 -0.1417 35 1 5.2728 5.8993 5.0916 36 1 7.4038 4.3796 2.2818 37 1 5.8520 3.6834 2.9171 38 1 5.0580 -1.9342 1.0139 39 1 4.4941 -2.6205 -0.5286 40 1 5.6125 -1.2357 -0.5265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043978824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = 55.744811 kcal Electronic energy + Delta-G solvation = -22006.150348 eV Core-core repulsion = 18823.242033 eV Total energy + Delta-G solvation = -3182.908314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31762 -40.92910 -39.04374 -35.56989 -34.10524 -33.50542 -31.92420 -30.00863 -29.69500 -27.74505 -26.36202 -26.14108 -24.80378 -23.26807 -21.38691 -20.64233 -19.41133 -18.64493 -17.98521 -17.22255 -16.95683 -16.48800 -16.18397 -15.71468 -15.51204 -15.20796 -14.70648 -14.51095 -14.20458 -14.08974 -14.00527 -13.68308 -13.39920 -13.24796 -13.15427 -12.99197 -12.86025 -12.76276 -12.45411 -12.40427 -12.37877 -11.95766 -11.70666 -11.29973 -10.98849 -10.70929 -9.69933 -9.43933 -8.91935 -8.86353 -7.88092 -5.20359 0.85869 1.48372 1.49545 1.50096 1.59636 2.02784 2.36217 2.45915 2.49875 3.34057 3.46716 3.78233 3.91468 3.94742 4.19478 4.30352 4.42017 4.53252 4.54071 4.56070 4.67946 4.72851 4.77605 4.83540 4.86493 4.92285 4.97751 5.10107 5.12162 5.18782 5.20851 5.29971 5.36826 5.48682 5.77353 5.86138 5.90659 6.06925 6.63586 6.72342 6.92938 7.32090 7.61906 8.62546 9.30199 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.005173 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.210521 B = 5411.696344 C = 6344.074685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.021 3.979 3 C -0.188 4.188 4 C -0.261 4.261 5 C 0.585 3.415 6 O -0.589 6.589 7 N -0.577 5.577 8 C 0.101 3.899 9 C 0.103 3.897 10 C 0.108 3.892 11 N -0.624 5.624 12 C -0.221 4.221 13 H 0.083 0.917 14 C -0.058 4.058 15 N -0.951 5.951 16 Si 0.974 3.026 17 H -0.292 1.292 18 H -0.266 1.266 19 H -0.294 1.294 20 C 0.155 3.845 21 C 0.096 3.904 22 C -0.093 4.093 23 N -0.534 5.534 24 H 0.431 0.569 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.249 0.751 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -16.254 -7.580 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.212 4.212 4 C -0.271 4.271 5 C 0.378 3.622 6 O -0.472 6.472 7 N -0.306 5.306 8 C -0.042 4.042 9 C -0.003 4.003 10 C -0.019 4.019 11 N -0.350 5.350 12 C -0.349 4.349 13 H 0.101 0.899 14 C -0.251 4.251 15 N -0.600 5.600 16 Si 0.802 3.198 17 H -0.219 1.219 18 H -0.190 1.190 19 H -0.220 1.220 20 C 0.029 3.971 21 C -0.022 4.022 22 C -0.151 4.151 23 N -0.132 5.132 24 H 0.271 0.729 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.686 -16.330 -7.650 20.470 hybrid contribution -0.120 0.999 0.689 1.219 sum -9.806 -15.331 -6.962 19.485 Atomic orbital electron populations 1.20427 0.84968 1.04570 1.03808 1.20661 0.94914 0.85251 1.08107 1.22081 0.90274 0.98867 1.09993 1.20094 0.92949 0.93337 1.20690 1.17894 0.87161 0.79910 0.77280 1.90643 1.37927 1.72774 1.45817 1.47225 1.10767 1.20622 1.51964 1.21831 0.85463 0.99074 0.97816 1.22425 0.87320 0.91789 0.98788 1.22932 0.97704 0.91497 0.89765 1.45982 1.54657 1.31376 1.03008 1.19221 1.19142 1.05629 0.90885 0.89943 1.25519 1.01941 1.01799 0.95857 1.70017 1.44884 1.43944 1.01143 0.85131 0.78675 0.78315 0.77632 1.21931 1.19048 1.22008 1.22321 0.94486 0.86252 0.94070 1.20356 0.86368 0.93398 1.02108 1.20551 0.93422 0.97337 1.03765 1.41415 1.04162 1.09558 1.58056 0.72852 0.89791 0.89654 0.89675 0.83890 0.93423 0.90597 0.91185 0.87608 0.93766 0.92667 0.94250 0.94984 0.93935 0.89971 0.88394 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.41 71.24 0.74 -0.23 16 2 C 0.02 0.42 7.13 40.98 0.29 0.71 16 3 C -0.19 -5.22 8.63 23.62 0.20 -5.02 16 4 C -0.26 -8.45 5.53 -19.04 -0.11 -8.56 16 5 C 0.59 22.99 7.49 86.62 0.65 23.64 16 6 O -0.59 -25.33 14.95 -4.10 -0.06 -25.40 16 7 N -0.58 -23.42 3.12 -825.44 -2.57 -25.99 16 8 C 0.10 3.98 8.21 127.77 1.05 5.03 16 9 C 0.10 4.35 4.66 45.55 0.21 4.56 16 10 C 0.11 4.68 8.31 83.18 0.69 5.37 16 11 N -0.62 -31.88 2.47 -737.94 -1.82 -33.70 16 12 C -0.22 -12.11 10.18 84.03 0.86 -11.25 16 13 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 14 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 15 N -0.95 -56.37 11.72 21.65 0.25 -56.12 16 16 Si 0.97 44.78 29.56 68.60 2.03 46.81 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 C 0.16 7.58 6.28 83.27 0.52 8.11 16 21 C 0.10 2.43 7.17 41.78 0.30 2.73 16 22 C -0.09 -1.95 10.21 71.24 0.73 -1.22 16 23 N -0.53 -9.66 5.90 -171.06 -1.01 -10.67 16 24 H 0.43 4.22 8.96 -92.71 -0.83 3.39 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.14 3.98 6.35 -2.91 -0.02 3.96 16 29 H 0.05 1.81 7.34 -2.39 -0.02 1.79 16 30 H 0.08 2.69 5.80 -2.38 -0.01 2.68 16 31 H 0.07 3.34 5.10 -2.39 -0.01 3.33 16 32 H 0.11 4.32 7.32 -2.39 -0.02 4.30 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 2.29 6.71 -2.39 -0.02 2.27 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 2.03 6.53 -2.39 -0.02 2.01 16 Total: -1.00 -71.26 324.13 3.65 -67.61 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.23 Total: 16.35 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.61 Total: 21.11 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -5.15 Total: -126.48 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.26 3.65 -67.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043978824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.352 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds