Wall clock time and date at job start Mon Mar 30 2020 01:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.45943 * 2 1 4 4 C 1.34782 * 119.99734 * 299.97212 * 3 2 1 5 5 O 1.21622 * 120.00372 * 0.02562 * 4 3 2 6 6 C 1.47263 * 119.99602 * 180.02562 * 4 3 2 7 7 C 1.46686 * 126.94272 * 179.97438 * 6 4 3 8 8 C 1.34483 * 106.33671 * 179.97438 * 7 6 4 9 9 N 1.36455 * 108.85607 * 0.02562 * 8 7 6 10 10 H 0.96996 * 124.85356 * 180.02562 * 9 8 7 11 11 C 1.34659 * 110.29402 * 359.74310 * 9 8 7 12 12 C 1.53041 * 109.45974 * 119.97515 * 2 1 3 13 13 C 1.53193 * 109.31105 * 181.38483 * 12 2 1 14 14 N 1.46928 * 108.77520 * 305.36495 * 13 12 2 15 15 C 1.36940 * 120.62959 * 233.58553 * 14 13 12 16 16 H 1.07992 * 119.99796 * 152.32566 * 15 14 13 17 17 C 1.38808 * 119.99786 * 332.32286 * 15 14 13 18 18 N 1.31614 * 120.00335 * 342.64662 * 17 15 14 19 19 Si 1.86804 * 119.99838 * 162.64095 * 17 15 14 20 20 H 1.48499 * 109.47184 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47205 * 300.00434 * 19 17 15 22 22 H 1.48499 * 109.46877 * 60.00347 * 19 17 15 23 23 C 1.46923 * 118.74171 * 53.85993 * 14 13 12 24 24 C 1.53038 * 109.45694 * 240.04017 * 2 1 3 25 25 H 1.08995 * 109.46799 * 300.02524 * 1 2 3 26 26 H 1.08995 * 109.46891 * 60.02596 * 1 2 3 27 27 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00038 * 119.97726 * 3 2 1 29 29 H 1.08003 * 126.82853 * 359.96249 * 7 6 4 30 30 H 1.08000 * 125.57439 * 180.02562 * 8 7 6 31 31 H 1.08003 * 125.80088 * 180.29715 * 11 9 8 32 32 H 1.08999 * 109.49799 * 61.43470 * 12 2 1 33 33 H 1.09000 * 109.52082 * 301.35006 * 12 2 1 34 34 H 1.08999 * 109.58803 * 185.57393 * 13 12 2 35 35 H 1.09003 * 109.70237 * 65.22112 * 13 12 2 36 36 H 0.97006 * 120.00347 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.59145 * 65.92479 * 23 14 13 38 38 H 1.08998 * 109.59312 * 186.35605 * 23 14 13 39 39 H 1.08994 * 109.50474 * 298.56728 * 24 2 1 40 40 H 1.09007 * 109.49914 * 58.63122 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 -1.0112 5 8 0.9937 1.8130 -1.9234 6 6 2.1838 3.5993 -1.0114 7 6 1.9258 4.6255 -2.0273 8 6 2.5680 5.7337 -1.6172 9 7 3.1965 5.4674 -0.4356 10 1 3.7279 6.1054 0.0657 11 6 2.9683 4.1939 -0.0619 12 6 2.0399 -0.7210 1.2500 13 6 3.5715 -0.6888 1.2641 14 7 4.0679 -1.2488 -0.0003 15 6 4.9765 -2.2734 -0.0004 16 1 5.0096 -2.9656 -0.8287 17 6 5.8549 -2.4222 1.0640 18 7 6.0606 -1.4204 1.8925 19 14 6.7450 -4.0443 1.3207 20 1 7.6183 -3.9457 2.5177 21 1 5.7503 -5.1283 1.5221 22 1 7.5737 -4.3485 0.1265 23 6 3.5757 -0.6847 -1.2644 24 6 2.0398 -0.7206 -1.2502 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 2.5755 1.6988 0.7277 29 1 1.3374 4.5133 -2.9260 30 1 2.5837 6.6797 -2.1378 31 1 3.3426 3.7219 0.8345 32 1 1.6979 -1.7558 1.2380 33 1 1.6573 -0.2215 2.1401 34 1 3.9418 -1.2848 2.0982 35 1 3.9165 0.3399 1.3685 36 1 6.6748 -1.5242 2.6362 37 1 3.9188 0.3451 -1.3633 38 1 3.9487 -1.2780 -2.0992 39 1 1.6978 -1.7554 -1.2386 40 1 1.6567 -0.2208 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045448680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:26 Heat of formation + Delta-G solvation = 31.621861 kcal Electronic energy + Delta-G solvation = -22354.192127 eV Core-core repulsion = 19170.237763 eV Total energy + Delta-G solvation = -3183.954364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04597 -39.55639 -36.99824 -34.26461 -32.09796 -31.09575 -30.43456 -29.81168 -28.76409 -27.32117 -24.06435 -23.10091 -22.18456 -20.96103 -20.50794 -19.43961 -18.69498 -18.31953 -16.74859 -16.03345 -14.84120 -14.75345 -14.54527 -13.98502 -13.89403 -13.70870 -13.48918 -13.31758 -13.03657 -12.95726 -12.78234 -12.33303 -11.97548 -11.64343 -11.53467 -11.23215 -11.12008 -10.85771 -10.66622 -10.33515 -10.22304 -9.81702 -9.67665 -9.53970 -8.99365 -8.78176 -8.49172 -8.41932 -8.26725 -6.61355 -5.76784 -3.17055 1.93040 2.51041 3.21091 3.40260 3.45266 3.47616 3.76099 3.96668 4.52923 4.96430 5.06182 5.21034 5.37797 5.42478 5.50851 5.61186 5.68204 5.72121 5.97584 6.07126 6.14458 6.16518 6.30007 6.41651 6.42522 6.53496 6.60914 6.73188 6.83053 6.84636 6.92891 6.94110 7.07882 7.23908 7.35654 7.41352 7.62318 7.82282 8.15787 8.48442 8.84247 9.25050 9.89031 10.46494 11.31795 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.005132 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.554173 B = 5454.417210 C = 6102.532120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.186 3.814 3 N -0.709 5.709 4 C 0.589 3.411 5 O -0.549 6.549 6 C -0.223 4.223 7 C -0.143 4.143 8 C -0.029 4.029 9 N -0.554 5.554 10 H 0.415 0.585 11 C 0.045 3.955 12 C -0.146 4.146 13 C 0.173 3.827 14 N -0.591 5.591 15 C -0.247 4.247 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.906 5.906 19 Si 0.901 3.099 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.151 3.849 24 C -0.143 4.143 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.395 0.605 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.014 0.986 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 13.005 -1.089 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.101 3.899 3 N -0.360 5.360 4 C 0.377 3.623 5 O -0.429 6.429 6 C -0.233 4.233 7 C -0.168 4.168 8 C -0.156 4.156 9 N -0.148 5.148 10 H 0.251 0.749 11 C -0.091 4.091 12 C -0.185 4.185 13 C 0.047 3.953 14 N -0.314 5.314 15 C -0.377 4.377 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.552 5.552 19 Si 0.731 3.269 20 H -0.217 1.217 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.024 3.976 24 C -0.182 4.182 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.230 0.770 29 H 0.163 0.837 30 H 0.184 0.816 31 H 0.189 0.811 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.823 12.791 -1.552 15.074 hybrid contribution 1.133 -0.340 0.850 1.457 sum -6.689 12.451 -0.702 14.152 Atomic orbital electron populations 1.22225 0.95579 1.01661 1.02346 1.20217 0.92500 0.80264 0.96966 1.45987 1.53209 1.11986 1.24800 1.17324 0.79478 0.83773 0.81697 1.90661 1.39039 1.76987 1.36199 1.20646 1.08505 0.95129 0.99062 1.21940 1.03422 0.91336 1.00071 1.21754 1.02975 1.00766 0.90136 1.41577 1.41790 1.11458 1.19990 0.74879 1.22024 1.01297 0.85096 1.00639 1.22516 1.01331 0.99994 0.94684 1.20722 0.86918 0.96944 0.90733 1.44049 1.48280 1.39516 0.99521 1.19181 1.09593 1.02934 1.06017 0.91799 1.24989 0.97259 0.97411 1.00044 1.70009 1.37976 1.29070 1.18098 0.86384 0.79248 0.83988 0.77261 1.21722 1.21080 1.20959 1.20924 0.90943 0.96086 0.89603 1.22460 0.98844 0.99478 0.97456 0.93486 0.90818 0.92439 0.76980 0.83684 0.81590 0.81102 0.91111 0.92879 0.89385 0.96771 0.93743 0.96522 0.93238 0.92028 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.40 37.16 0.31 -2.27 16 2 C 0.19 3.31 0.66 -131.77 -0.09 3.22 16 3 N -0.71 -11.85 4.08 -48.68 -0.20 -12.05 16 4 C 0.59 10.32 7.23 -12.59 -0.09 10.23 16 5 O -0.55 -11.09 13.18 5.26 0.07 -11.02 16 6 C -0.22 -3.32 6.29 -103.35 -0.65 -3.97 16 7 C -0.14 -1.89 10.97 -37.50 -0.41 -2.31 16 8 C -0.03 -0.28 11.89 -16.82 -0.20 -0.48 16 9 N -0.55 -5.00 5.90 -12.84 -0.08 -5.07 16 10 H 0.42 2.26 8.96 -40.82 -0.37 1.89 16 11 C 0.05 0.53 11.40 -16.84 -0.19 0.34 16 12 C -0.15 -2.70 4.96 -26.61 -0.13 -2.83 16 13 C 0.17 3.94 5.03 -3.71 -0.02 3.92 16 14 N -0.59 -14.78 2.99 -172.05 -0.51 -15.29 16 15 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 16 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 18 N -0.91 -25.78 11.19 55.49 0.62 -25.16 16 19 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.15 3.39 6.28 -3.48 -0.02 3.36 16 24 C -0.14 -2.82 4.68 -26.38 -0.12 -2.94 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.30 6.16 -51.93 -0.32 0.98 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.40 6.10 6.21 -40.82 -0.25 5.84 16 29 H 0.15 1.88 8.06 -52.48 -0.42 1.45 16 30 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.17 1.65 7.45 -52.48 -0.39 1.26 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 35 H 0.01 0.33 6.95 -51.93 -0.36 -0.03 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.02 0.39 7.73 -51.93 -0.40 -0.01 16 38 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.50 6.20 -51.93 -0.32 1.18 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -32.75 317.20 -7.84 -40.59 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.65 Total: 7.33 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.84 Total: -0.76 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.17 Total: -57.58 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.75 -7.84 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045448680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.216 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds