Wall clock time and date at job start Mon Mar 30 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.45943 * 2 1 4 4 C 1.34782 * 119.99734 * 299.97212 * 3 2 1 5 5 O 1.21622 * 120.00372 * 0.02562 * 4 3 2 6 6 C 1.47263 * 119.99602 * 180.02562 * 4 3 2 7 7 C 1.46686 * 126.94272 * 179.97438 * 6 4 3 8 8 C 1.34483 * 106.33671 * 179.97438 * 7 6 4 9 9 N 1.36455 * 108.85607 * 0.02562 * 8 7 6 10 10 H 0.96996 * 124.85356 * 180.02562 * 9 8 7 11 11 C 1.34659 * 110.29402 * 359.74310 * 9 8 7 12 12 C 1.53041 * 109.45974 * 119.97515 * 2 1 3 13 13 C 1.53193 * 109.31105 * 181.38483 * 12 2 1 14 14 N 1.46928 * 108.77520 * 305.36495 * 13 12 2 15 15 C 1.36940 * 120.62959 * 233.58553 * 14 13 12 16 16 H 1.07992 * 119.99796 * 152.32566 * 15 14 13 17 17 C 1.38808 * 119.99786 * 332.32286 * 15 14 13 18 18 N 1.31614 * 120.00335 * 342.64662 * 17 15 14 19 19 Si 1.86804 * 119.99838 * 162.64095 * 17 15 14 20 20 H 1.48499 * 109.47184 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47205 * 300.00434 * 19 17 15 22 22 H 1.48499 * 109.46877 * 60.00347 * 19 17 15 23 23 C 1.46923 * 118.74171 * 53.85993 * 14 13 12 24 24 C 1.53038 * 109.45694 * 240.04017 * 2 1 3 25 25 H 1.08995 * 109.46799 * 300.02524 * 1 2 3 26 26 H 1.08995 * 109.46891 * 60.02596 * 1 2 3 27 27 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00038 * 119.97726 * 3 2 1 29 29 H 1.08003 * 126.82853 * 359.96249 * 7 6 4 30 30 H 1.08000 * 125.57439 * 180.02562 * 8 7 6 31 31 H 1.08003 * 125.80088 * 180.29715 * 11 9 8 32 32 H 1.08999 * 109.49799 * 61.43470 * 12 2 1 33 33 H 1.09000 * 109.52082 * 301.35006 * 12 2 1 34 34 H 1.08999 * 109.58803 * 185.57393 * 13 12 2 35 35 H 1.09003 * 109.70237 * 65.22112 * 13 12 2 36 36 H 0.97006 * 120.00347 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.59145 * 65.92479 * 23 14 13 38 38 H 1.08998 * 109.59312 * 186.35605 * 23 14 13 39 39 H 1.08994 * 109.50474 * 298.56728 * 24 2 1 40 40 H 1.09007 * 109.49914 * 58.63122 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 -1.0112 5 8 0.9937 1.8130 -1.9234 6 6 2.1838 3.5993 -1.0114 7 6 1.9258 4.6255 -2.0273 8 6 2.5680 5.7337 -1.6172 9 7 3.1965 5.4674 -0.4356 10 1 3.7279 6.1054 0.0657 11 6 2.9683 4.1939 -0.0619 12 6 2.0399 -0.7210 1.2500 13 6 3.5715 -0.6888 1.2641 14 7 4.0679 -1.2488 -0.0003 15 6 4.9765 -2.2734 -0.0004 16 1 5.0096 -2.9656 -0.8287 17 6 5.8549 -2.4222 1.0640 18 7 6.0606 -1.4204 1.8925 19 14 6.7450 -4.0443 1.3207 20 1 7.6183 -3.9457 2.5177 21 1 5.7503 -5.1283 1.5221 22 1 7.5737 -4.3485 0.1265 23 6 3.5757 -0.6847 -1.2644 24 6 2.0398 -0.7206 -1.2502 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 2.5755 1.6988 0.7277 29 1 1.3374 4.5133 -2.9260 30 1 2.5837 6.6797 -2.1378 31 1 3.3426 3.7219 0.8345 32 1 1.6979 -1.7558 1.2380 33 1 1.6573 -0.2215 2.1401 34 1 3.9418 -1.2848 2.0982 35 1 3.9165 0.3399 1.3685 36 1 6.6748 -1.5242 2.6362 37 1 3.9188 0.3451 -1.3633 38 1 3.9487 -1.2780 -2.0992 39 1 1.6978 -1.7554 -1.2386 40 1 1.6567 -0.2208 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045448680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:25 Heat of formation + Delta-G solvation = 10.162438 kcal Electronic energy + Delta-G solvation = -22355.122677 eV Core-core repulsion = 19170.237763 eV Total energy + Delta-G solvation = -3184.884914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00458 -40.93365 -38.57399 -36.01341 -33.71491 -32.68808 -31.64710 -31.38345 -29.76023 -29.02792 -25.91630 -24.34939 -23.88714 -22.54030 -21.52661 -20.68434 -19.98627 -19.49262 -18.61106 -17.25283 -16.81237 -16.24578 -15.90172 -15.59265 -15.23857 -14.96270 -14.86277 -14.71549 -14.53490 -14.38002 -14.00018 -13.73478 -13.30200 -13.07597 -13.01588 -12.87104 -12.82256 -12.59015 -12.48375 -12.18674 -11.96676 -11.74537 -11.32427 -11.26775 -10.51755 -10.45103 -9.92223 -9.63599 -9.23649 -8.63155 -7.85588 -5.29112 0.88119 1.48571 1.50304 1.57100 1.61289 2.35850 2.52852 2.57135 2.73629 3.28900 3.72397 3.85607 4.07064 4.14538 4.18962 4.22899 4.42822 4.51159 4.61467 4.67261 4.77992 4.85354 4.92200 4.94247 5.00197 5.08510 5.14834 5.20788 5.27993 5.32251 5.41362 5.51532 5.66130 5.74751 5.79653 5.86381 6.00873 6.41616 6.72417 6.86336 7.18444 7.52993 7.88365 8.41152 9.20118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.005132 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.554173 B = 5454.417210 C = 6102.532120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.188 3.812 3 N -0.706 5.706 4 C 0.585 3.415 5 O -0.586 6.586 6 C -0.267 4.267 7 C -0.183 4.183 8 C -0.002 4.002 9 N -0.536 5.536 10 H 0.436 0.564 11 C 0.058 3.942 12 C -0.131 4.131 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.267 4.267 16 H 0.058 0.942 17 C -0.042 4.042 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.291 1.291 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.155 3.845 24 C -0.131 4.131 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.402 0.598 29 H 0.135 0.865 30 H 0.207 0.793 31 H 0.190 0.810 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.010 0.990 36 H 0.251 0.749 37 H 0.006 0.994 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 14.249 -0.158 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.102 3.898 3 N -0.356 5.356 4 C 0.375 3.625 5 O -0.468 6.468 6 C -0.278 4.278 7 C -0.207 4.207 8 C -0.131 4.131 9 N -0.132 5.132 10 H 0.276 0.724 11 C -0.080 4.080 12 C -0.170 4.170 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.397 4.397 16 H 0.076 0.924 17 C -0.238 4.238 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.217 1.217 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.029 3.971 24 C -0.171 4.171 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.238 0.762 29 H 0.153 0.847 30 H 0.224 0.776 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.888 14.071 -0.606 16.142 hybrid contribution 1.206 -0.636 0.522 1.460 sum -6.682 13.435 -0.084 15.005 Atomic orbital electron populations 1.22108 0.93820 1.02444 1.02418 1.20144 0.93727 0.80636 0.95319 1.45908 1.53243 1.11428 1.25031 1.17763 0.78825 0.84850 0.81038 1.90627 1.40795 1.77908 1.37459 1.20632 1.11269 0.94396 1.01470 1.22070 1.05594 0.92560 1.00450 1.22257 1.00288 1.00989 0.89519 1.41626 1.40905 1.10950 1.19678 0.72367 1.22211 0.99767 0.85834 1.00238 1.22327 0.97953 1.00411 0.96317 1.20603 0.89568 0.95702 0.88748 1.44258 1.48288 1.39409 1.00850 1.19430 1.10380 1.03689 1.06184 0.92434 1.25659 0.98094 1.00234 0.99842 1.70135 1.38500 1.30517 1.18338 0.85410 0.78094 0.80366 0.76963 1.21660 1.20559 1.20643 1.20895 0.92759 0.94936 0.88517 1.22309 0.96533 0.99733 0.98533 0.91747 0.92365 0.91302 0.76231 0.84663 0.77595 0.79319 0.91424 0.89909 0.92395 0.97237 0.93988 0.97631 0.94281 0.92062 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 8.40 71.98 0.60 -4.02 16 2 C 0.19 6.53 0.66 3.63 0.00 6.53 16 3 N -0.71 -23.25 4.08 -426.16 -1.74 -24.99 16 4 C 0.58 20.66 7.23 86.62 0.63 21.29 16 5 O -0.59 -24.28 13.18 -4.10 -0.05 -24.33 16 6 C -0.27 -7.84 6.29 -19.04 -0.12 -7.96 16 7 C -0.18 -4.73 10.97 23.62 0.26 -4.47 16 8 C 0.00 -0.04 11.89 83.11 0.99 0.95 16 9 N -0.54 -7.98 5.90 -194.55 -1.15 -9.13 16 10 H 0.44 3.01 8.96 -92.71 -0.83 2.18 16 11 C 0.06 1.23 11.40 83.92 0.96 2.18 16 12 C -0.13 -4.68 4.96 30.67 0.15 -4.53 16 13 C 0.18 8.17 5.03 86.36 0.43 8.61 16 14 N -0.60 -30.61 2.99 -698.25 -2.09 -32.70 16 15 C -0.27 -14.88 9.58 84.03 0.81 -14.07 16 16 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 17 C -0.04 -2.35 4.91 84.86 0.42 -1.93 16 18 N -0.93 -53.14 11.19 21.65 0.24 -52.90 16 19 Si 0.96 44.64 29.59 68.60 2.03 46.67 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 C 0.15 7.10 6.28 86.51 0.54 7.64 16 24 C -0.13 -5.23 4.68 30.82 0.14 -5.08 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 2.02 6.16 -2.39 -0.01 2.00 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.40 12.03 6.21 -92.71 -0.58 11.45 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 30 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.19 3.22 7.45 -2.91 -0.02 3.20 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.06 3.00 6.04 -2.39 -0.01 2.99 16 35 H 0.01 0.44 6.95 -2.39 -0.02 0.43 16 36 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 37 H 0.01 0.27 7.73 -2.39 -0.02 0.26 16 38 H 0.04 1.82 7.93 -2.39 -0.02 1.80 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 2.78 6.20 -2.38 -0.01 2.76 16 Total: -1.00 -71.91 317.20 2.71 -69.20 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.34 Total: 23.03 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.81 Total: 5.14 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -4.73 Total: -119.71 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.91 2.71 -69.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045448680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.360 kcal (2) G-P(sol) polarization free energy of solvation -71.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds