Wall clock time and date at job start Mon Mar 30 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35537 * 125.67761 * 2 1 4 4 C 1.35455 * 108.86980 * 179.97438 * 3 2 1 5 5 C 1.39829 * 107.86644 * 0.02562 * 4 3 2 6 6 C 1.37653 * 125.67721 * 179.97438 * 2 1 3 7 7 C 1.46669 * 126.23214 * 359.75462 * 6 2 1 8 8 O 1.21696 * 120.00383 * 355.05801 * 7 6 2 9 9 N 1.34775 * 120.00094 * 175.06048 * 7 6 2 10 10 C 1.46495 * 120.00510 * 184.64948 * 9 7 6 11 11 C 1.52998 * 110.64304 * 300.70533 * 10 9 7 12 12 C 1.55157 * 110.72315 * 177.55849 * 10 9 7 13 13 C 1.55383 * 101.36700 * 277.04706 * 12 10 9 14 14 N 1.47429 * 104.87483 * 323.01508 * 13 12 10 15 15 C 1.36938 * 125.64808 * 204.09868 * 14 13 12 16 16 H 1.08005 * 119.99575 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00353 * 0.03693 * 15 14 13 18 18 N 1.31621 * 119.99576 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00236 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46980 * 90.00035 * 19 17 15 21 21 H 1.48498 * 109.47061 * 210.00533 * 19 17 15 22 22 H 1.48504 * 109.46884 * 330.00190 * 19 17 15 23 23 C 1.47018 * 108.70093 * 24.13318 * 14 13 12 24 24 H 1.09004 * 109.47396 * 274.63191 * 1 2 3 25 25 H 1.09008 * 109.47032 * 34.63068 * 1 2 3 26 26 H 1.08999 * 109.47126 * 154.62646 * 1 2 3 27 27 H 1.08004 * 125.56092 * 359.97438 * 3 2 1 28 28 H 1.08000 * 126.06219 * 180.02562 * 4 3 2 29 29 H 1.07997 * 126.45858 * 180.02562 * 5 4 3 30 30 H 0.97004 * 120.00051 * 4.65398 * 9 7 6 31 31 H 1.08993 * 109.47272 * 59.29548 * 11 10 9 32 32 H 1.09007 * 109.47328 * 179.29724 * 11 10 9 33 33 H 1.09003 * 109.47243 * 299.29497 * 11 10 9 34 34 H 1.08996 * 111.00207 * 35.22172 * 12 10 9 35 35 H 1.09009 * 111.00221 * 159.06749 * 12 10 9 36 36 H 1.09004 * 110.34347 * 204.16787 * 13 12 10 37 37 H 1.08996 * 110.44365 * 81.91954 * 13 12 10 38 38 H 0.97000 * 119.99597 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.88302 * 239.52411 * 23 14 13 40 40 H 1.08998 * 110.01138 * 118.43193 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 0.0006 5 6 3.5780 -0.6888 0.0004 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0062 8 8 0.6257 -2.7645 0.1019 9 7 2.7081 -3.5143 -0.0945 10 6 2.2477 -4.9016 -0.1914 11 6 1.4149 -5.2805 1.0349 12 6 3.4495 -5.8686 -0.3590 13 6 3.7056 -5.7765 -1.8888 14 7 2.3644 -5.6683 -2.4913 15 6 2.0344 -6.0199 -3.7729 16 1 1.0188 -5.9014 -4.1209 17 6 3.0050 -6.5289 -4.6248 18 7 4.2424 -6.6740 -4.2004 19 14 2.5550 -7.0080 -6.3733 20 1 2.7363 -5.8378 -7.2693 21 1 3.4331 -8.1175 -6.8241 22 1 1.1378 -7.4496 -6.4164 23 6 1.4400 -5.1194 -1.4883 24 1 -0.3634 0.0830 1.0243 25 1 -0.3633 0.8457 -0.5841 26 1 -0.3633 -0.9285 -0.4404 27 1 1.9081 2.1236 -0.0004 28 1 4.4132 1.3612 0.0011 29 1 4.4583 -1.3144 0.0011 30 1 3.6578 -3.3169 -0.1027 31 1 0.5537 -4.6166 1.1085 32 1 1.0722 -6.3107 0.9373 33 1 2.0256 -5.1843 1.9326 34 1 4.3133 -5.5198 0.2068 35 1 3.1778 -6.8835 -0.0683 36 1 4.2092 -6.6758 -2.2435 37 1 4.2991 -4.8928 -2.1230 38 1 4.9206 -7.0301 -4.7955 39 1 0.6293 -5.8249 -1.3061 40 1 1.0336 -4.1696 -1.8359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046150145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:06 Heat of formation + Delta-G solvation = 46.517756 kcal Electronic energy + Delta-G solvation = -22144.343004 eV Core-core repulsion = 18961.034575 eV Total energy + Delta-G solvation = -3183.308429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29796 -39.44365 -37.08991 -34.09682 -32.90124 -31.84278 -30.24907 -28.84175 -28.47254 -26.46798 -25.65694 -23.79599 -22.68125 -20.65018 -20.37347 -19.49232 -18.84369 -17.81412 -16.79543 -15.69781 -15.52838 -15.42031 -14.67759 -14.24269 -14.21437 -13.66378 -13.37704 -13.23545 -13.05822 -12.71707 -12.41805 -12.32107 -12.19495 -11.99846 -11.90061 -11.68606 -11.53363 -10.92131 -10.84520 -10.39321 -10.31681 -10.07053 -9.93479 -9.63971 -9.28894 -8.72339 -8.67041 -8.61755 -8.14137 -6.78914 -5.62801 -3.03175 1.61103 2.71342 2.79585 3.42253 3.47181 3.49112 3.56825 3.68956 4.51795 4.82466 4.90428 4.97467 5.19675 5.23522 5.41507 5.42416 5.44082 5.52582 5.59497 5.64222 5.76754 6.05502 6.07969 6.20390 6.20649 6.26567 6.38134 6.48238 6.54034 6.72822 6.75731 6.85889 7.02111 7.15778 7.22947 7.48838 7.65411 7.82896 7.90605 8.37798 8.52729 9.25573 9.86216 10.51215 11.41515 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.004955 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.500060 B = 5649.696358 C = 6044.316798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.411 5.411 3 C 0.005 3.995 4 C -0.208 4.208 5 C -0.144 4.144 6 C -0.044 4.044 7 C 0.590 3.410 8 O -0.550 6.550 9 N -0.694 5.694 10 C 0.162 3.838 11 C -0.152 4.152 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.603 5.603 15 C -0.218 4.218 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.924 5.924 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.138 3.862 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.166 0.834 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.400 0.600 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.012 0.988 38 H 0.251 0.749 39 H 0.031 0.969 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 12.068 11.703 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.084 5.084 3 C -0.130 4.130 4 C -0.232 4.232 5 C -0.171 4.171 6 C -0.157 4.157 7 C 0.378 3.622 8 O -0.430 6.430 9 N -0.344 5.344 10 C 0.076 3.924 11 C -0.210 4.210 12 C -0.186 4.186 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.346 4.346 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.573 5.573 19 Si 0.745 3.255 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.012 3.988 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.183 0.817 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.235 0.765 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.149 11.736 11.551 16.765 hybrid contribution 0.319 0.138 -0.996 1.055 sum -2.830 11.874 10.555 16.137 Atomic orbital electron populations 1.22281 0.76253 1.05655 1.03396 1.43838 1.06776 1.05000 1.52813 1.21958 0.90782 0.91422 1.08816 1.20788 0.95909 0.95039 1.11474 1.21363 0.94591 0.95466 1.05637 1.20232 0.90437 0.87877 1.17198 1.16898 0.85765 0.83253 0.76289 1.90706 1.16318 1.84667 1.51337 1.45649 1.09412 1.05827 1.73523 1.21369 0.95852 0.79554 0.95610 1.22085 1.00825 1.01987 0.96100 1.23446 0.95537 0.98164 1.01462 1.22028 0.87571 1.02321 0.85307 1.44485 1.04907 1.74144 1.09399 1.19086 0.94864 1.34427 0.86247 0.90605 1.24753 0.95533 1.01909 0.98524 1.69776 1.01060 1.51936 1.34556 0.86075 0.77352 0.77801 0.84321 1.21727 1.21646 1.20720 1.21585 0.92616 0.96776 0.87853 0.90809 0.90318 0.87459 0.81708 0.84187 0.83925 0.76542 0.90543 0.91838 0.93188 0.91767 0.90420 0.87427 0.97047 0.93801 0.95147 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.66 59.85 0.64 1.36 16 2 N -0.41 -5.50 3.16 -120.23 -0.38 -5.88 16 3 C 0.01 0.06 11.38 -16.91 -0.19 -0.13 16 4 C -0.21 -2.45 10.81 -39.98 -0.43 -2.88 16 5 C -0.14 -1.95 10.35 -39.12 -0.41 -2.35 16 6 C -0.04 -0.67 6.89 -81.98 -0.56 -1.23 16 7 C 0.59 10.24 6.94 -12.86 -0.09 10.15 16 8 O -0.55 -10.51 11.65 5.19 0.06 -10.45 16 9 N -0.69 -11.62 5.13 -47.20 -0.24 -11.87 16 10 C 0.16 2.96 0.81 -129.99 -0.10 2.85 16 11 C -0.15 -2.44 8.41 37.16 0.31 -2.13 16 12 C -0.15 -2.69 6.11 -24.32 -0.15 -2.84 16 13 C 0.15 3.65 5.88 -2.27 -0.01 3.63 16 14 N -0.60 -15.79 3.40 -169.77 -0.58 -16.37 16 15 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 16 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.14 3.13 6.19 -3.06 -0.02 3.11 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.11 1.45 6.18 -51.93 -0.32 1.13 16 27 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.14 1.67 7.45 -52.49 -0.39 1.27 16 30 H 0.40 5.92 7.38 -40.82 -0.30 5.62 16 31 H 0.08 1.33 6.05 -51.93 -0.31 1.01 16 32 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.08 1.39 8.05 -51.92 -0.42 0.97 16 36 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.03 0.70 7.80 -51.93 -0.41 0.29 16 40 H 0.03 0.70 6.81 -51.93 -0.35 0.35 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -32.82 321.07 -7.76 -40.58 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.73 Total: 5.42 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.27 Total: 2.70 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.64 Total: -60.50 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.06 Total: -10.45 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.82 -7.76 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046150145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.099 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds