Wall clock time and date at job start Mon Mar 30 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35537 * 125.67761 * 2 1 4 4 C 1.35455 * 108.86980 * 179.97438 * 3 2 1 5 5 C 1.39829 * 107.86644 * 0.02562 * 4 3 2 6 6 C 1.37653 * 125.67721 * 179.97438 * 2 1 3 7 7 C 1.46669 * 126.23214 * 359.75462 * 6 2 1 8 8 O 1.21696 * 120.00383 * 355.05801 * 7 6 2 9 9 N 1.34775 * 120.00094 * 175.06048 * 7 6 2 10 10 C 1.46495 * 120.00510 * 184.64948 * 9 7 6 11 11 C 1.52998 * 110.64304 * 300.70533 * 10 9 7 12 12 C 1.55157 * 110.72315 * 177.55849 * 10 9 7 13 13 C 1.55383 * 101.36700 * 277.04706 * 12 10 9 14 14 N 1.47429 * 104.87483 * 323.01508 * 13 12 10 15 15 C 1.36938 * 125.64808 * 204.09868 * 14 13 12 16 16 H 1.08005 * 119.99575 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00353 * 0.03693 * 15 14 13 18 18 N 1.31621 * 119.99576 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00236 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46980 * 90.00035 * 19 17 15 21 21 H 1.48498 * 109.47061 * 210.00533 * 19 17 15 22 22 H 1.48504 * 109.46884 * 330.00190 * 19 17 15 23 23 C 1.47018 * 108.70093 * 24.13318 * 14 13 12 24 24 H 1.09004 * 109.47396 * 274.63191 * 1 2 3 25 25 H 1.09008 * 109.47032 * 34.63068 * 1 2 3 26 26 H 1.08999 * 109.47126 * 154.62646 * 1 2 3 27 27 H 1.08004 * 125.56092 * 359.97438 * 3 2 1 28 28 H 1.08000 * 126.06219 * 180.02562 * 4 3 2 29 29 H 1.07997 * 126.45858 * 180.02562 * 5 4 3 30 30 H 0.97004 * 120.00051 * 4.65398 * 9 7 6 31 31 H 1.08993 * 109.47272 * 59.29548 * 11 10 9 32 32 H 1.09007 * 109.47328 * 179.29724 * 11 10 9 33 33 H 1.09003 * 109.47243 * 299.29497 * 11 10 9 34 34 H 1.08996 * 111.00207 * 35.22172 * 12 10 9 35 35 H 1.09009 * 111.00221 * 159.06749 * 12 10 9 36 36 H 1.09004 * 110.34347 * 204.16787 * 13 12 10 37 37 H 1.08996 * 110.44365 * 81.91954 * 13 12 10 38 38 H 0.97000 * 119.99597 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.88302 * 239.52411 * 23 14 13 40 40 H 1.08998 * 110.01138 * 118.43193 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 0.0006 5 6 3.5780 -0.6888 0.0004 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0062 8 8 0.6257 -2.7645 0.1019 9 7 2.7081 -3.5143 -0.0945 10 6 2.2477 -4.9016 -0.1914 11 6 1.4149 -5.2805 1.0349 12 6 3.4495 -5.8686 -0.3590 13 6 3.7056 -5.7765 -1.8888 14 7 2.3644 -5.6683 -2.4913 15 6 2.0344 -6.0199 -3.7729 16 1 1.0188 -5.9014 -4.1209 17 6 3.0050 -6.5289 -4.6248 18 7 4.2424 -6.6740 -4.2004 19 14 2.5550 -7.0080 -6.3733 20 1 2.7363 -5.8378 -7.2693 21 1 3.4331 -8.1175 -6.8241 22 1 1.1378 -7.4496 -6.4164 23 6 1.4400 -5.1194 -1.4883 24 1 -0.3634 0.0830 1.0243 25 1 -0.3633 0.8457 -0.5841 26 1 -0.3633 -0.9285 -0.4404 27 1 1.9081 2.1236 -0.0004 28 1 4.4132 1.3612 0.0011 29 1 4.4583 -1.3144 0.0011 30 1 3.6578 -3.3169 -0.1027 31 1 0.5537 -4.6166 1.1085 32 1 1.0722 -6.3107 0.9373 33 1 2.0256 -5.1843 1.9326 34 1 4.3133 -5.5198 0.2068 35 1 3.1778 -6.8835 -0.0683 36 1 4.2092 -6.6758 -2.2435 37 1 4.2991 -4.8928 -2.1230 38 1 4.9206 -7.0301 -4.7955 39 1 0.6293 -5.8249 -1.3061 40 1 1.0336 -4.1696 -1.8359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046150145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:06 Heat of formation + Delta-G solvation = 25.110691 kcal Electronic energy + Delta-G solvation = -22145.271284 eV Core-core repulsion = 18961.034575 eV Total energy + Delta-G solvation = -3184.236709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31985 -40.83480 -38.67056 -35.78633 -34.13161 -33.34029 -31.91772 -30.45458 -29.69772 -27.56088 -27.36303 -25.50263 -23.98682 -22.24706 -21.67946 -20.66046 -20.28003 -19.10286 -18.61691 -17.17444 -16.70704 -16.67992 -16.57959 -15.69040 -15.45908 -15.38008 -14.69778 -14.40636 -14.29216 -14.10749 -14.01959 -13.61714 -13.32806 -13.30789 -13.17119 -13.04836 -12.87840 -12.82827 -12.77168 -12.10085 -12.04246 -11.96801 -11.70902 -11.54640 -10.76302 -10.69967 -10.08492 -9.66543 -9.14878 -8.89651 -7.79341 -5.23154 0.52181 1.44578 1.46214 1.55263 1.70176 1.87091 2.38352 2.47629 2.48873 3.29938 3.56501 3.70071 3.88275 3.99293 4.00102 4.16914 4.21046 4.38536 4.49402 4.56354 4.62268 4.66645 4.71994 4.81629 4.84887 4.89561 5.00261 5.08353 5.18119 5.29057 5.34685 5.41617 5.59965 5.65959 5.79844 5.85787 6.02262 6.30306 6.36065 6.60765 7.10211 7.24081 7.75986 8.39871 9.22100 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.004955 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.500060 B = 5649.696358 C = 6044.316798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.421 5.421 3 C 0.021 3.979 4 C -0.221 4.221 5 C -0.143 4.143 6 C -0.089 4.089 7 C 0.585 3.415 8 O -0.577 6.577 9 N -0.693 5.693 10 C 0.173 3.827 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.155 3.845 14 N -0.622 5.622 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.978 3.022 20 H -0.288 1.288 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.139 3.861 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.206 0.794 28 H 0.166 0.834 29 H 0.154 0.846 30 H 0.409 0.591 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.077 0.923 37 H -0.008 1.008 38 H 0.249 0.751 39 H 0.025 0.975 40 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 13.533 12.654 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.094 5.094 3 C -0.114 4.114 4 C -0.244 4.244 5 C -0.170 4.170 6 C -0.202 4.202 7 C 0.375 3.625 8 O -0.459 6.459 9 N -0.344 5.344 10 C 0.086 3.914 11 C -0.200 4.200 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.348 5.348 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.253 4.253 18 N -0.593 5.593 19 Si 0.806 3.194 20 H -0.216 1.216 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.012 3.988 24 H 0.105 0.895 25 H 0.128 0.872 26 H 0.094 0.906 27 H 0.223 0.777 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.245 0.755 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.010 0.990 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -2.721 13.205 12.525 18.403 hybrid contribution 0.181 -0.210 -1.319 1.348 sum -2.540 12.996 11.206 17.347 Atomic orbital electron populations 1.22343 0.75438 1.05319 1.04513 1.44104 1.07545 1.05033 1.52702 1.22704 0.90481 0.92444 1.05799 1.21186 0.97235 0.94484 1.11487 1.21692 0.94248 0.96796 1.04264 1.20116 0.91680 0.87449 1.20932 1.17266 0.85424 0.84296 0.75553 1.90685 1.17360 1.85253 1.52621 1.45559 1.09945 1.05211 1.73642 1.21187 0.95382 0.80595 0.94214 1.21996 1.00271 1.01922 0.95804 1.23301 0.96919 0.98985 0.97417 1.21845 0.86247 0.99827 0.89027 1.44761 1.06382 1.74236 1.09437 1.19372 0.94924 1.35090 0.87931 0.91253 1.25550 0.95538 1.01922 1.02242 1.70010 1.01644 1.52127 1.35511 0.85084 0.77446 0.77297 0.79524 1.21551 1.21249 1.19813 1.21655 0.92763 0.94959 0.89402 0.89547 0.87193 0.90605 0.77713 0.81650 0.82874 0.75478 0.91965 0.91146 0.90588 0.88046 0.89489 0.90461 0.99015 0.94113 0.95752 0.97943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.36 10.66 127.77 1.36 2.72 16 2 N -0.42 -10.63 3.16 -534.30 -1.69 -12.32 16 3 C 0.02 0.41 11.38 83.48 0.95 1.36 16 4 C -0.22 -4.58 10.81 22.01 0.24 -4.35 16 5 C -0.14 -3.66 10.35 22.57 0.23 -3.43 16 6 C -0.09 -2.69 6.89 40.35 0.28 -2.41 16 7 C 0.58 20.53 6.94 86.44 0.60 21.13 16 8 O -0.58 -22.73 11.65 -4.33 -0.05 -22.78 16 9 N -0.69 -23.05 5.13 -421.48 -2.16 -25.21 16 10 C 0.17 6.23 0.81 4.79 0.00 6.24 16 11 C -0.14 -4.38 8.41 71.98 0.61 -3.78 16 12 C -0.13 -4.52 6.11 32.15 0.20 -4.32 16 13 C 0.16 7.55 5.88 87.02 0.51 8.06 16 14 N -0.62 -33.53 3.40 -691.03 -2.35 -35.88 16 15 C -0.24 -14.38 10.27 84.03 0.86 -13.52 16 16 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 17 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 18 N -0.94 -56.12 10.09 21.65 0.22 -55.90 16 19 Si 0.98 46.69 29.55 68.60 2.03 48.71 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.14 6.46 6.19 86.73 0.54 7.00 16 24 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.08 2.11 6.18 -2.39 -0.01 2.10 16 27 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.15 3.38 7.45 -2.91 -0.02 3.36 16 30 H 0.41 11.81 7.38 -92.71 -0.68 11.13 16 31 H 0.06 2.14 6.05 -2.39 -0.01 2.12 16 32 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.86 8.06 -2.39 -0.02 2.84 16 35 H 0.09 2.96 8.05 -2.38 -0.02 2.94 16 36 H 0.08 4.26 5.87 -2.39 -0.01 4.24 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.02 1.15 7.80 -2.39 -0.02 1.14 16 40 H 0.00 0.13 6.81 -2.39 -0.02 0.12 16 Total: -1.00 -73.58 321.07 3.20 -70.37 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.36 Total: 21.27 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.84 Total: 11.73 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -5.98 Total: -129.30 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.58 3.20 -70.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046150145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.485 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds