Wall clock time and date at job start Mon Mar 30 2020 01:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35528 * 125.67721 * 2 1 4 4 C 1.35455 * 108.87429 * 179.97438 * 3 2 1 5 5 C 1.39835 * 107.86048 * 359.97438 * 4 3 2 6 6 C 1.37644 * 125.67629 * 179.97438 * 2 1 3 7 7 C 1.46676 * 126.23688 * 0.02562 * 6 2 1 8 8 O 1.21696 * 119.99800 * 354.46645 * 7 6 2 9 9 N 1.34773 * 120.00357 * 174.46410 * 7 6 2 10 10 C 1.46502 * 120.00132 * 184.68487 * 9 7 6 11 11 C 1.52994 * 110.88582 * 62.42711 * 10 9 7 12 12 C 1.55157 * 111.00323 * 186.35090 * 10 9 7 13 13 C 1.54319 * 102.94608 * 82.56899 * 12 10 9 14 14 N 1.47021 * 107.27100 * 22.19411 * 13 12 10 15 15 C 1.36937 * 125.65486 * 181.02526 * 14 13 12 16 16 H 1.07995 * 120.00296 * 180.02562 * 15 14 13 17 17 C 1.38815 * 119.99490 * 0.03541 * 15 14 13 18 18 N 1.31617 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46997 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47054 * 120.00234 * 19 17 15 22 22 H 1.48495 * 109.47382 * 240.00402 * 19 17 15 23 23 C 1.47431 * 108.69951 * 1.05960 * 14 13 12 24 24 H 1.08995 * 109.47383 * 274.18988 * 1 2 3 25 25 H 1.09000 * 109.47224 * 34.19261 * 1 2 3 26 26 H 1.09003 * 109.47307 * 154.19035 * 1 2 3 27 27 H 1.08000 * 125.56434 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.06992 * 180.02562 * 4 3 2 29 29 H 1.08004 * 126.45811 * 180.26212 * 5 4 3 30 30 H 0.97003 * 120.00046 * 4.68126 * 9 7 6 31 31 H 1.09001 * 109.47513 * 60.70589 * 11 10 9 32 32 H 1.09003 * 109.47138 * 180.69772 * 11 10 9 33 33 H 1.08995 * 109.47315 * 300.69837 * 11 10 9 34 34 H 1.09001 * 110.72274 * 200.93683 * 12 10 9 35 35 H 1.09004 * 110.71998 * 324.20604 * 12 10 9 36 36 H 1.08999 * 109.88415 * 262.77337 * 13 12 10 37 37 H 1.09000 * 109.88125 * 141.60737 * 13 12 10 38 38 H 0.97003 * 120.00325 * 179.97438 * 18 17 15 39 39 H 1.09006 * 110.36653 * 217.03313 * 23 14 13 40 40 H 1.08997 * 110.46019 * 94.76126 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0015 6 6 2.2678 -1.1181 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6263 -2.7651 0.1018 9 7 2.7075 -3.5137 -0.1115 10 6 2.2463 -4.9004 -0.2147 11 6 1.4083 -5.1039 -1.4785 12 6 3.4418 -5.8886 -0.1740 13 6 3.7199 -6.0327 1.3371 14 7 2.4867 -5.6598 2.0454 15 6 2.3234 -5.6349 3.4047 16 1 1.3734 -5.3458 3.8293 17 6 3.3791 -5.9812 4.2370 18 7 4.5370 -6.3329 3.7195 19 14 3.1562 -5.9480 6.0913 20 1 1.7711 -5.5222 6.4158 21 1 3.3985 -7.3050 6.6433 22 1 4.1215 -4.9909 6.6889 23 6 1.4547 -5.3179 1.0496 24 1 -0.3634 0.0751 1.0249 25 1 -0.3634 0.8500 -0.5775 26 1 -0.3634 -0.9252 -0.4474 27 1 1.9081 2.1235 -0.0004 28 1 4.4132 1.3612 0.0011 29 1 4.4583 -1.3144 0.0062 30 1 3.6571 -3.3162 -0.1238 31 1 2.0147 -4.8807 -2.3564 32 1 1.0675 -6.1381 -1.5259 33 1 0.5459 -4.4379 -1.4538 34 1 3.1634 -6.8488 -0.6082 35 1 4.3070 -5.4685 -0.6870 36 1 4.5315 -5.3665 1.6298 37 1 3.9829 -7.0648 1.5688 38 1 5.2749 -6.5745 4.3011 39 1 0.8439 -4.4883 1.4058 40 1 0.8289 -6.1845 0.8365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046150146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:09 Heat of formation + Delta-G solvation = 44.990640 kcal Electronic energy + Delta-G solvation = -22296.799406 eV Core-core repulsion = 19113.424756 eV Total energy + Delta-G solvation = -3183.374650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23957 -39.37748 -37.03418 -34.02332 -32.86138 -31.81494 -30.21240 -28.87220 -28.45306 -26.42484 -25.62680 -23.80157 -22.63704 -20.62698 -20.28220 -19.43356 -18.82108 -17.77198 -16.71770 -15.60407 -15.45008 -15.40511 -14.60156 -14.28934 -14.15565 -13.63168 -13.35536 -13.26041 -13.10033 -12.77108 -12.31516 -12.28640 -12.03072 -11.96650 -11.80354 -11.74052 -11.62095 -10.87158 -10.84277 -10.37978 -10.32728 -10.01279 -9.94947 -9.61530 -9.29393 -8.67015 -8.61278 -8.51874 -8.08541 -6.74057 -5.65882 -2.97167 1.67503 2.78135 2.83943 3.43457 3.49381 3.51739 3.65813 3.73157 4.55527 4.84453 4.94350 5.01474 5.21078 5.25512 5.40807 5.47372 5.49501 5.53381 5.65277 5.66770 5.76404 6.01548 6.13419 6.15838 6.17299 6.27345 6.35921 6.43641 6.56519 6.71571 6.80602 6.92012 7.07426 7.19358 7.28022 7.60027 7.61809 7.85324 7.96047 8.31573 8.60923 9.29048 9.89130 10.55225 11.46431 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.005783 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.345018 B = 4840.901694 C = 5540.820457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.412 5.412 3 C 0.004 3.996 4 C -0.208 4.208 5 C -0.144 4.144 6 C -0.042 4.042 7 C 0.591 3.409 8 O -0.551 6.551 9 N -0.688 5.688 10 C 0.158 3.842 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.177 3.823 14 N -0.602 5.602 15 C -0.218 4.218 16 H 0.076 0.924 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.909 3.091 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.130 3.870 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.165 0.835 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.400 0.600 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.250 0.750 39 H 0.059 0.941 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 11.438 -12.007 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.085 5.085 3 C -0.131 4.131 4 C -0.232 4.232 5 C -0.170 4.170 6 C -0.156 4.156 7 C 0.379 3.621 8 O -0.431 6.431 9 N -0.337 5.337 10 C 0.072 3.928 11 C -0.206 4.206 12 C -0.185 4.185 13 C 0.052 3.948 14 N -0.329 5.329 15 C -0.347 4.347 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.740 3.260 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.003 3.997 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.182 0.818 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.235 0.765 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.249 11.154 -11.748 16.747 hybrid contribution 0.532 0.216 1.145 1.281 sum -3.717 11.370 -10.602 15.985 Atomic orbital electron populations 1.22261 0.76317 1.05221 1.03690 1.43823 1.06731 1.05011 1.52916 1.21935 0.90787 0.91388 1.09000 1.20783 0.95881 0.95049 1.11504 1.21373 0.94653 0.95433 1.05571 1.20240 0.90405 0.87898 1.17011 1.16860 0.85771 0.83202 0.76280 1.90709 1.16509 1.84699 1.51197 1.45444 1.09364 1.05585 1.73327 1.21497 0.95753 0.79733 0.95851 1.21972 1.00386 1.02259 0.96025 1.23233 0.96182 0.97869 1.01219 1.21155 0.89431 0.99944 0.84237 1.44438 1.08025 1.79162 1.01231 1.19101 0.97259 1.38257 0.80072 0.90617 1.24753 0.95935 1.02015 0.97924 1.69953 1.02160 1.52391 1.32815 0.86066 0.77241 0.77164 0.85494 1.20606 1.21814 1.21856 1.21923 0.92007 0.97564 0.88223 0.90680 0.90445 0.87621 0.81768 0.84243 0.83928 0.76522 0.93046 0.91694 0.91391 0.90804 0.91693 0.93611 0.93838 0.93952 0.92280 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.64 59.85 0.64 1.39 16 2 N -0.41 -5.66 3.16 -120.24 -0.38 -6.04 16 3 C 0.00 0.04 11.38 -16.91 -0.19 -0.15 16 4 C -0.21 -2.56 10.81 -39.98 -0.43 -2.99 16 5 C -0.14 -2.04 10.35 -39.12 -0.41 -2.45 16 6 C -0.04 -0.66 6.88 -81.98 -0.56 -1.23 16 7 C 0.59 10.61 7.18 -12.86 -0.09 10.52 16 8 O -0.55 -10.89 11.40 5.19 0.06 -10.83 16 9 N -0.69 -11.85 5.16 -46.92 -0.24 -12.10 16 10 C 0.16 2.85 0.82 -129.67 -0.11 2.75 16 11 C -0.15 -2.26 8.62 37.15 0.32 -1.94 16 12 C -0.15 -2.63 5.99 -24.90 -0.15 -2.77 16 13 C 0.18 4.24 5.36 -3.07 -0.02 4.23 16 14 N -0.60 -15.74 3.39 -170.07 -0.58 -16.32 16 15 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 19 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 C 0.13 2.90 6.10 -2.53 -0.02 2.89 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.11 1.38 6.21 -51.93 -0.32 1.06 16 27 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.14 1.80 7.45 -52.48 -0.39 1.41 16 30 H 0.40 6.24 7.39 -40.82 -0.30 5.94 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.07 1.12 6.62 -51.93 -0.34 0.77 16 34 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.06 1.00 8.05 -51.93 -0.42 0.59 16 36 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 37 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.06 1.44 6.15 -51.93 -0.32 1.12 16 40 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -33.44 321.86 -7.79 -41.23 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.79 Total: 4.88 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.27 Total: 3.36 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.63 Total: -61.29 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.44 -7.79 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046150146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.223 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds