Wall clock time and date at job start Mon Mar 30 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35528 * 125.67721 * 2 1 4 4 C 1.35455 * 108.87429 * 179.97438 * 3 2 1 5 5 C 1.39835 * 107.86048 * 359.97438 * 4 3 2 6 6 C 1.37644 * 125.67629 * 179.97438 * 2 1 3 7 7 C 1.46676 * 126.23688 * 0.02562 * 6 2 1 8 8 O 1.21696 * 119.99800 * 354.46645 * 7 6 2 9 9 N 1.34773 * 120.00357 * 174.46410 * 7 6 2 10 10 C 1.46502 * 120.00132 * 184.68487 * 9 7 6 11 11 C 1.52994 * 110.88582 * 62.42711 * 10 9 7 12 12 C 1.55157 * 111.00323 * 186.35090 * 10 9 7 13 13 C 1.54319 * 102.94608 * 82.56899 * 12 10 9 14 14 N 1.47021 * 107.27100 * 22.19411 * 13 12 10 15 15 C 1.36937 * 125.65486 * 181.02526 * 14 13 12 16 16 H 1.07995 * 120.00296 * 180.02562 * 15 14 13 17 17 C 1.38815 * 119.99490 * 0.03541 * 15 14 13 18 18 N 1.31617 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46997 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47054 * 120.00234 * 19 17 15 22 22 H 1.48495 * 109.47382 * 240.00402 * 19 17 15 23 23 C 1.47431 * 108.69951 * 1.05960 * 14 13 12 24 24 H 1.08995 * 109.47383 * 274.18988 * 1 2 3 25 25 H 1.09000 * 109.47224 * 34.19261 * 1 2 3 26 26 H 1.09003 * 109.47307 * 154.19035 * 1 2 3 27 27 H 1.08000 * 125.56434 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.06992 * 180.02562 * 4 3 2 29 29 H 1.08004 * 126.45811 * 180.26212 * 5 4 3 30 30 H 0.97003 * 120.00046 * 4.68126 * 9 7 6 31 31 H 1.09001 * 109.47513 * 60.70589 * 11 10 9 32 32 H 1.09003 * 109.47138 * 180.69772 * 11 10 9 33 33 H 1.08995 * 109.47315 * 300.69837 * 11 10 9 34 34 H 1.09001 * 110.72274 * 200.93683 * 12 10 9 35 35 H 1.09004 * 110.71998 * 324.20604 * 12 10 9 36 36 H 1.08999 * 109.88415 * 262.77337 * 13 12 10 37 37 H 1.09000 * 109.88125 * 141.60737 * 13 12 10 38 38 H 0.97003 * 120.00325 * 179.97438 * 18 17 15 39 39 H 1.09006 * 110.36653 * 217.03313 * 23 14 13 40 40 H 1.08997 * 110.46019 * 94.76126 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0015 6 6 2.2678 -1.1181 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6263 -2.7651 0.1018 9 7 2.7075 -3.5137 -0.1115 10 6 2.2463 -4.9004 -0.2147 11 6 1.4083 -5.1039 -1.4785 12 6 3.4418 -5.8886 -0.1740 13 6 3.7199 -6.0327 1.3371 14 7 2.4867 -5.6598 2.0454 15 6 2.3234 -5.6349 3.4047 16 1 1.3734 -5.3458 3.8293 17 6 3.3791 -5.9812 4.2370 18 7 4.5370 -6.3329 3.7195 19 14 3.1562 -5.9480 6.0913 20 1 1.7711 -5.5222 6.4158 21 1 3.3985 -7.3050 6.6433 22 1 4.1215 -4.9909 6.6889 23 6 1.4547 -5.3179 1.0496 24 1 -0.3634 0.0751 1.0249 25 1 -0.3634 0.8500 -0.5775 26 1 -0.3634 -0.9252 -0.4474 27 1 1.9081 2.1235 -0.0004 28 1 4.4132 1.3612 0.0011 29 1 4.4583 -1.3144 0.0062 30 1 3.6571 -3.3162 -0.1238 31 1 2.0147 -4.8807 -2.3564 32 1 1.0675 -6.1381 -1.5259 33 1 0.5459 -4.4379 -1.4538 34 1 3.1634 -6.8488 -0.6082 35 1 4.3070 -5.4685 -0.6870 36 1 4.5315 -5.3665 1.6298 37 1 3.9829 -7.0648 1.5688 38 1 5.2749 -6.5745 4.3011 39 1 0.8439 -4.4883 1.4058 40 1 0.8289 -6.1845 0.8365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046150146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:08 Heat of formation + Delta-G solvation = 22.850925 kcal Electronic energy + Delta-G solvation = -22297.759456 eV Core-core repulsion = 19113.424756 eV Total energy + Delta-G solvation = -3184.334700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29700 -40.79289 -38.62618 -35.73495 -34.12818 -33.33764 -31.89074 -30.48302 -29.68963 -27.52047 -27.35022 -25.51941 -23.98265 -22.17298 -21.66427 -20.65069 -20.24507 -19.10764 -18.53782 -17.09663 -16.70296 -16.65192 -16.54431 -15.76640 -15.53191 -15.30933 -14.81946 -14.40498 -14.16940 -14.09844 -13.87374 -13.55761 -13.43149 -13.25416 -13.17644 -13.05149 -12.85393 -12.82982 -12.75519 -12.12806 -12.03465 -11.97987 -11.71302 -11.54191 -10.72390 -10.71004 -10.02244 -9.65674 -9.14028 -8.85600 -7.86833 -5.20069 0.54452 1.41758 1.42420 1.52847 1.75013 1.87146 2.42292 2.47072 2.50257 3.31297 3.54617 3.70331 3.91000 4.01313 4.05520 4.18582 4.21935 4.38644 4.50744 4.57383 4.64131 4.68681 4.73604 4.82677 4.86670 4.94570 5.04457 5.08854 5.18797 5.29977 5.33949 5.41412 5.64735 5.68192 5.77364 5.87179 6.03065 6.19745 6.37721 6.63638 7.11189 7.28234 7.77107 8.41393 9.23383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.005783 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.345018 B = 4840.901694 C = 5540.820457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.420 5.420 3 C 0.021 3.979 4 C -0.221 4.221 5 C -0.145 4.145 6 C -0.087 4.087 7 C 0.585 3.415 8 O -0.579 6.579 9 N -0.689 5.689 10 C 0.168 3.832 11 C -0.137 4.137 12 C -0.128 4.128 13 C 0.185 3.815 14 N -0.621 5.621 15 C -0.240 4.240 16 H 0.066 0.934 17 C -0.060 4.060 18 N -0.946 5.946 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.289 1.289 23 C 0.126 3.874 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.207 0.793 28 H 0.165 0.835 29 H 0.150 0.850 30 H 0.407 0.593 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.016 0.984 37 H 0.010 0.990 38 H 0.248 0.752 39 H 0.033 0.967 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 13.149 -13.163 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.093 5.093 3 C -0.114 4.114 4 C -0.244 4.244 5 C -0.172 4.172 6 C -0.200 4.200 7 C 0.375 3.625 8 O -0.461 6.461 9 N -0.338 5.338 10 C 0.082 3.918 11 C -0.196 4.196 12 C -0.166 4.166 13 C 0.060 3.940 14 N -0.347 5.347 15 C -0.369 4.369 16 H 0.084 0.916 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.802 3.198 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.216 1.216 23 C 0.000 4.000 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.224 0.776 28 H 0.183 0.817 29 H 0.167 0.833 30 H 0.243 0.757 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.045 12.864 -12.930 18.682 hybrid contribution 0.445 -0.237 1.530 1.611 sum -3.600 12.628 -11.399 17.388 Atomic orbital electron populations 1.22343 0.75382 1.05764 1.04057 1.44091 1.07549 1.04969 1.52698 1.22692 0.90419 0.92461 1.05841 1.21171 0.97283 0.94386 1.11565 1.21669 0.94271 0.96823 1.04463 1.20122 0.91615 0.87543 1.20672 1.17237 0.85447 0.84277 0.75568 1.90686 1.17587 1.85311 1.52556 1.45434 1.09772 1.05230 1.73400 1.21390 0.95318 0.80272 0.94864 1.21893 0.99692 1.02795 0.95202 1.23113 0.97449 0.99235 0.96837 1.20947 0.87963 0.96974 0.88129 1.44685 1.09629 1.79215 1.01134 1.19339 0.97135 1.38447 0.81993 0.91568 1.25523 0.95739 1.01977 1.02108 1.70149 1.02560 1.52819 1.33954 0.85088 0.77335 0.77078 0.80325 1.19900 1.21370 1.21624 1.22029 0.91712 0.96627 0.89611 0.90898 0.86505 0.89932 0.77632 0.81728 0.83273 0.75706 0.90384 0.90356 0.92778 0.88690 0.88420 0.96569 0.97222 0.94282 0.94829 0.95695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 10.64 127.77 1.36 2.76 16 2 N -0.42 -10.91 3.16 -534.32 -1.69 -12.60 16 3 C 0.02 0.43 11.38 83.48 0.95 1.38 16 4 C -0.22 -4.84 10.81 22.01 0.24 -4.60 16 5 C -0.15 -3.96 10.35 22.57 0.23 -3.73 16 6 C -0.09 -2.72 6.88 40.35 0.28 -2.45 16 7 C 0.59 21.29 7.18 86.45 0.62 21.91 16 8 O -0.58 -23.60 11.40 -4.34 -0.05 -23.65 16 9 N -0.69 -23.63 5.16 -420.56 -2.17 -25.80 16 10 C 0.17 5.97 0.82 4.99 0.00 5.97 16 11 C -0.14 -3.96 8.62 71.98 0.62 -3.34 16 12 C -0.13 -4.41 5.99 31.78 0.19 -4.22 16 13 C 0.18 9.04 5.36 86.73 0.47 9.50 16 14 N -0.62 -33.42 3.39 -691.99 -2.35 -35.77 16 15 C -0.24 -14.31 10.28 84.03 0.86 -13.45 16 16 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 17 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 18 N -0.95 -57.45 10.31 21.65 0.22 -57.22 16 19 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 20 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 C 0.13 5.79 6.10 86.85 0.53 6.32 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 2.19 6.21 -2.39 -0.01 2.17 16 27 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.15 3.66 7.45 -2.91 -0.02 3.63 16 30 H 0.41 12.53 7.39 -92.71 -0.69 11.85 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 33 H 0.05 1.73 6.62 -2.39 -0.02 1.72 16 34 H 0.09 2.92 8.04 -2.39 -0.02 2.90 16 35 H 0.10 2.76 8.05 -2.39 -0.02 2.74 16 36 H 0.02 0.87 7.38 -2.39 -0.02 0.85 16 37 H 0.01 0.53 7.51 -2.39 -0.02 0.51 16 38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.03 1.70 6.15 -2.38 -0.01 1.69 16 40 H 0.03 1.14 8.03 -2.39 -0.02 1.12 16 Total: -1.00 -75.56 321.86 3.17 -72.38 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.36 Total: 19.96 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.82 Total: 12.97 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.98 Total: -131.40 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -75.56 3.17 -72.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046150146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.236 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds