Wall clock time and date at job start Mon Mar 30 2020 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34656 * 125.79998 * 2 1 4 4 H 0.97009 * 124.85251 * 0.02562 * 3 2 1 5 5 C 1.36444 * 110.29646 * 180.29402 * 3 2 1 6 6 C 1.34481 * 108.85989 * 359.74689 * 5 3 2 7 7 C 1.36762 * 125.80345 * 179.86195 * 2 1 3 8 8 C 1.47266 * 126.94169 * 359.97438 * 7 2 1 9 9 O 1.21630 * 119.99845 * 359.70904 * 8 7 2 10 10 N 1.34779 * 120.00247 * 179.70886 * 8 7 2 11 11 C 1.46498 * 120.00306 * 179.97438 * 10 8 7 12 12 C 1.53001 * 110.88391 * 297.57406 * 11 10 8 13 13 C 1.55159 * 111.03909 * 173.66568 * 11 10 8 14 14 C 1.54320 * 102.94130 * 277.41533 * 13 11 10 15 15 N 1.47294 * 107.30900 * 337.81372 * 14 13 11 16 16 C 1.36935 * 125.79375 * 178.92674 * 15 14 13 17 17 H 1.08000 * 119.99782 * 174.83252 * 16 15 14 18 18 C 1.38813 * 119.99748 * 354.82946 * 16 15 14 19 19 N 1.31620 * 120.00341 * 7.02995 * 18 16 15 20 20 Si 1.86808 * 119.99539 * 187.02565 * 18 16 15 21 21 H 1.48502 * 109.46896 * 94.99260 * 20 18 16 22 22 H 1.48501 * 109.46951 * 214.98619 * 20 18 16 23 23 H 1.48492 * 109.47136 * 334.98799 * 20 18 16 24 24 C 1.47424 * 108.55492 * 358.92849 * 15 14 13 25 25 H 1.09007 * 109.47341 * 270.13732 * 1 2 3 26 26 H 1.08994 * 109.47312 * 30.13518 * 1 2 3 27 27 H 1.09004 * 109.47011 * 150.13564 * 1 2 3 28 28 H 1.08000 * 125.57105 * 179.72596 * 5 3 2 29 29 H 1.07994 * 126.84090 * 180.02562 * 6 5 3 30 30 H 0.96996 * 119.99670 * 359.97438 * 10 8 7 31 31 H 1.08997 * 109.46891 * 182.42544 * 12 11 10 32 32 H 1.09003 * 109.47229 * 302.42038 * 12 11 10 33 33 H 1.08994 * 109.47296 * 62.42911 * 12 11 10 34 34 H 1.08999 * 110.71715 * 35.77732 * 13 11 10 35 35 H 1.08997 * 110.71630 * 158.87093 * 13 11 10 36 36 H 1.09004 * 109.88495 * 97.22540 * 14 13 11 37 37 H 1.09000 * 109.88099 * 218.38976 * 14 13 11 38 38 H 0.96997 * 119.99818 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36530 * 265.25725 * 24 15 14 40 40 H 1.09001 * 110.36388 * 143.04481 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0075 0.0004 5 6 3.6095 0.7274 -0.0066 6 6 3.6882 -0.6151 -0.0053 7 6 2.3071 -1.1092 0.0027 8 6 1.8703 -2.5156 0.0066 9 8 0.6839 -2.7838 0.0131 10 7 2.7850 -3.5054 0.0030 11 6 2.3505 -4.9044 0.0074 12 6 1.5638 -5.2272 1.2794 13 6 3.5589 -5.8636 -0.1576 14 6 3.7825 -5.8781 -1.6845 15 7 2.5161 -5.4706 -2.3168 16 6 2.2997 -5.3359 -3.6622 17 1 1.3094 -5.1118 -4.0300 18 6 3.3534 -5.4872 -4.5532 19 7 4.5276 -5.8952 -4.1207 20 14 3.1045 -5.1119 -6.3662 21 1 3.5328 -3.7179 -6.6464 22 1 3.9145 -6.0520 -7.1819 23 1 1.6687 -5.2676 -6.7113 24 6 1.5187 -5.2316 -1.2578 25 1 -0.3634 0.0025 1.0277 26 1 -0.3633 0.8887 -0.5159 27 1 -0.3633 -0.8912 -0.5117 28 1 4.4497 1.4060 -0.0122 29 1 4.5889 -1.2109 -0.0090 30 1 3.7310 -3.2914 -0.0026 31 1 1.2894 -6.2820 1.2790 32 1 2.1804 -5.0125 2.1523 33 1 0.6612 -4.6171 1.3131 34 1 4.4359 -5.4709 0.3569 35 1 3.3128 -6.8603 0.2084 36 1 4.5721 -5.1752 -1.9503 37 1 4.0527 -6.8827 -2.0100 38 1 5.2637 -6.0013 -4.7434 39 1 0.9164 -6.1254 -1.0953 40 1 0.8808 -4.3878 -1.5211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046229651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:56 Heat of formation + Delta-G solvation = 8.729294 kcal Electronic energy + Delta-G solvation = -22256.893246 eV Core-core repulsion = 19071.946186 eV Total energy + Delta-G solvation = -3184.947060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11513 -40.73230 -38.54497 -35.58885 -33.69302 -32.39571 -32.22743 -31.13608 -30.25448 -27.49354 -27.24357 -25.44364 -23.87166 -22.13838 -21.67159 -20.62708 -20.10351 -18.84699 -18.49105 -17.06343 -16.86449 -16.57693 -16.09881 -15.62764 -15.45846 -15.07809 -14.63069 -14.36989 -14.09786 -13.94682 -13.84705 -13.55790 -13.50613 -13.38797 -13.34185 -13.00789 -12.81841 -12.73004 -12.43421 -12.07252 -12.01295 -11.94094 -11.68001 -11.49982 -10.68591 -10.49195 -9.91890 -9.64816 -9.05943 -8.83087 -7.85984 -5.17646 0.85535 1.42223 1.44163 1.53277 1.59244 2.22809 2.48612 2.62896 2.74772 3.32112 3.61949 3.75488 3.97819 4.10193 4.18063 4.23901 4.34112 4.37716 4.66527 4.69578 4.73619 4.75988 4.88381 4.91078 4.96803 5.01498 5.07618 5.09901 5.14689 5.34993 5.40351 5.44560 5.67151 5.74896 5.83284 5.87888 6.03586 6.21196 6.70971 6.87072 7.12420 7.54730 7.78618 8.44689 9.25003 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.006076 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.803478 B = 4607.290451 C = 5422.049860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.095 3.905 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.001 4.001 6 C -0.193 4.193 7 C -0.270 4.270 8 C 0.585 3.415 9 O -0.582 6.582 10 N -0.698 5.698 11 C 0.168 3.832 12 C -0.137 4.137 13 C -0.129 4.129 14 C 0.185 3.815 15 N -0.620 5.620 16 C -0.241 4.241 17 H 0.067 0.933 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.273 1.273 24 C 0.128 3.872 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.208 0.792 29 H 0.148 0.852 30 H 0.402 0.598 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.017 0.983 37 H 0.007 0.993 38 H 0.248 0.752 39 H 0.023 0.977 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 13.983 13.364 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 N -0.136 5.136 4 H 0.273 0.727 5 C -0.129 4.129 6 C -0.217 4.217 7 C -0.280 4.280 8 C 0.375 3.625 9 O -0.464 6.464 10 N -0.347 5.347 11 C 0.081 3.919 12 C -0.196 4.196 13 C -0.167 4.167 14 C 0.061 3.939 15 N -0.346 5.346 16 C -0.370 4.370 17 H 0.085 0.915 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.800 3.200 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.198 1.198 24 C 0.002 3.998 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.225 0.775 29 H 0.166 0.834 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.110 13.890 13.181 19.265 hybrid contribution 0.421 0.238 -1.454 1.532 sum -1.690 14.128 11.727 18.439 Atomic orbital electron populations 1.20500 0.86379 1.03975 1.03754 1.20478 0.94388 0.86052 1.01503 1.41547 1.05896 1.08583 1.57534 0.72676 1.22239 0.86514 0.96030 1.08115 1.22267 0.95228 0.95157 1.09069 1.20354 0.95152 0.91739 1.20785 1.17701 0.85107 0.85014 0.74657 1.90632 1.17743 1.84962 1.53093 1.45557 1.09656 1.04894 1.74633 1.21320 0.95120 0.80861 0.94635 1.21894 1.00255 1.02189 0.95222 1.23089 0.97507 0.99608 0.96488 1.20975 0.87601 0.96616 0.88744 1.44730 1.09031 1.79683 1.01173 1.19321 0.94426 1.40860 0.82372 0.91474 1.25535 0.95610 1.02079 1.02041 1.70157 1.02202 1.52873 1.34154 0.85156 0.77427 0.77275 0.80104 1.21514 1.21483 1.19847 1.21994 0.92092 0.96980 0.88728 0.89644 0.89206 0.91162 0.77496 0.83394 0.76248 0.90626 0.90812 0.92556 0.88731 0.88924 0.96465 0.97461 0.94297 0.95924 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.88 71.24 0.70 -1.34 16 2 C 0.10 2.47 7.17 41.78 0.30 2.77 16 3 N -0.54 -9.51 5.90 -182.74 -1.08 -10.59 16 4 H 0.43 4.06 8.96 -92.70 -0.83 3.23 16 5 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 6 C -0.19 -5.01 10.56 23.62 0.25 -4.76 16 7 C -0.27 -8.67 6.29 -19.04 -0.12 -8.79 16 8 C 0.58 22.31 7.20 86.62 0.62 22.93 16 9 O -0.58 -24.74 11.61 -4.13 -0.05 -24.79 16 10 N -0.70 -25.36 5.17 -419.99 -2.17 -27.53 16 11 C 0.17 6.27 0.82 5.00 0.00 6.27 16 12 C -0.14 -4.25 8.58 71.98 0.62 -3.63 16 13 C -0.13 -4.65 6.00 31.78 0.19 -4.46 16 14 C 0.19 9.30 5.39 86.68 0.47 9.76 16 15 N -0.62 -34.11 3.40 -691.29 -2.35 -36.46 16 16 C -0.24 -14.54 10.27 84.03 0.86 -13.68 16 17 H 0.07 4.04 7.84 -2.91 -0.02 4.02 16 18 C -0.06 -3.53 5.48 84.86 0.46 -3.07 16 19 N -0.94 -57.96 10.38 21.65 0.22 -57.73 16 20 Si 0.97 47.97 29.56 68.60 2.03 50.00 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.13 6.08 6.10 86.86 0.53 6.61 16 25 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 2.14 6.47 -2.39 -0.02 2.13 16 28 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.15 3.52 7.69 -2.91 -0.02 3.49 16 30 H 0.40 13.30 7.61 -92.71 -0.71 12.59 16 31 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.95 6.53 -2.39 -0.02 1.93 16 34 H 0.09 2.85 8.05 -2.39 -0.02 2.83 16 35 H 0.09 3.00 8.01 -2.39 -0.02 2.98 16 36 H 0.02 0.95 7.31 -2.38 -0.02 0.93 16 37 H 0.01 0.40 7.62 -2.39 -0.02 0.38 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 40 H 0.03 1.64 6.31 -2.39 -0.02 1.62 16 Total: -1.00 -78.19 322.32 2.01 -76.18 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.47 Total: 21.34 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.88 Total: 9.59 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -5.38 Total: -132.32 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -78.19 2.01 -76.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046229651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.905 kcal (2) G-P(sol) polarization free energy of solvation -78.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds