Wall clock time and date at job start Mon Mar 30 2020 01:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34666 * 125.80213 * 2 1 4 4 H 0.96998 * 124.84801 * 359.97438 * 3 2 1 5 5 C 1.36446 * 110.29599 * 180.02562 * 3 2 1 6 6 C 1.34476 * 108.85928 * 359.74941 * 5 3 2 7 7 C 1.36774 * 125.80313 * 180.02562 * 2 1 3 8 8 C 1.47261 * 126.93946 * 359.92778 * 7 2 1 9 9 O 1.21627 * 120.00122 * 0.02562 * 8 7 2 10 10 N 1.34778 * 119.99817 * 180.02562 * 8 7 2 11 11 C 1.46502 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53000 * 110.91392 * 62.45132 * 11 10 8 13 13 C 1.55448 * 111.01096 * 186.50321 * 11 10 8 14 14 C 1.54321 * 102.96961 * 82.52411 * 13 11 10 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46531 * 60.00328 * 20 18 16 22 22 H 1.48502 * 109.47014 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47009 * 300.00047 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 H 1.09000 * 109.46931 * 269.97434 * 1 2 3 26 26 H 1.08997 * 109.47728 * 29.96886 * 1 2 3 27 27 H 1.09002 * 109.47698 * 149.97453 * 1 2 3 28 28 H 1.08001 * 125.56854 * 180.02562 * 5 3 2 29 29 H 1.08008 * 126.83715 * 180.25844 * 6 5 3 30 30 H 0.97001 * 120.00073 * 0.02562 * 10 8 7 31 31 H 1.09000 * 109.47194 * 297.54709 * 12 11 10 32 32 H 1.09001 * 109.47578 * 57.55154 * 12 11 10 33 33 H 1.09003 * 109.46933 * 177.54882 * 12 11 10 34 34 H 1.08998 * 110.70855 * 324.15215 * 13 11 10 35 35 H 1.08998 * 110.85957 * 200.96831 * 13 11 10 36 36 H 1.08998 * 109.88101 * 262.77542 * 14 13 11 37 37 H 1.09000 * 109.88483 * 141.60664 * 14 13 11 38 38 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 40 40 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6095 0.7274 -0.0006 6 6 3.6882 -0.6150 0.0046 7 6 2.3070 -1.1093 -0.0005 8 6 1.8702 -2.5156 0.0004 9 8 0.6839 -2.7839 0.0012 10 7 2.7850 -3.5054 0.0002 11 6 2.3503 -4.9045 0.0005 12 6 1.5567 -5.2301 -1.2664 13 6 3.5619 -5.8644 0.1647 14 6 3.7918 -5.8743 1.6906 15 7 2.5297 -5.4660 2.3247 16 6 2.3209 -5.3286 3.6711 17 1 1.3527 -5.0225 4.0390 18 6 3.3536 -5.5828 4.5632 19 7 4.5334 -5.9563 4.1149 20 14 3.0690 -5.3947 6.3998 21 1 1.9880 -6.3176 6.8300 22 1 4.3194 -5.7229 7.1306 23 1 2.6732 -3.9951 6.6985 24 6 1.5260 -5.2295 1.2711 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3634 -0.8897 -0.5142 28 1 4.4497 1.4060 -0.0003 29 1 4.5890 -1.2109 0.0095 30 1 3.7311 -3.2914 0.0000 31 1 0.6536 -4.6205 -1.2962 32 1 2.1682 -5.0167 -2.1432 33 1 1.2829 -6.2852 -1.2624 34 1 4.4368 -5.4731 -0.3546 35 1 3.3168 -6.8638 -0.1949 36 1 4.5821 -5.1703 1.9510 37 1 4.0635 -6.8778 2.0182 38 1 5.2553 -6.1336 4.7382 39 1 0.9233 -6.1240 1.1137 40 1 0.8892 -4.3857 1.5363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046229652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:59 Heat of formation + Delta-G solvation = 33.105243 kcal Electronic energy + Delta-G solvation = -22237.815281 eV Core-core repulsion = 19053.925242 eV Total energy + Delta-G solvation = -3183.890039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11092 -39.24365 -36.90307 -33.77249 -32.01311 -31.40497 -30.76888 -29.61985 -28.53250 -26.25913 -25.53272 -23.67793 -22.52556 -20.68664 -20.21026 -19.26379 -18.64082 -17.56679 -16.78356 -15.61181 -15.31058 -14.90505 -14.52528 -14.07016 -13.89559 -13.53170 -13.44580 -13.02946 -12.90733 -12.70126 -12.54263 -12.45107 -11.91284 -11.75879 -11.65372 -11.52317 -11.44531 -10.80638 -10.78433 -10.24290 -10.21691 -10.01230 -9.85257 -9.54245 -9.04178 -8.74372 -8.50724 -8.33255 -8.02913 -6.67660 -5.60390 -2.91210 1.99405 2.54195 3.17672 3.47737 3.51119 3.52914 3.88994 4.05614 4.60175 4.90778 5.03454 5.18457 5.25151 5.44436 5.52820 5.59520 5.64881 5.72313 5.75524 5.86042 5.96879 6.04819 6.14066 6.23900 6.29782 6.35752 6.49048 6.54604 6.69637 6.84301 6.86295 6.97243 7.03975 7.37131 7.48792 7.65635 7.68860 7.90613 8.23649 8.37735 8.93567 9.34635 9.95057 10.61962 11.51859 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.005907 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.046034 B = 4738.761670 C = 5498.843265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.557 5.557 4 H 0.412 0.588 5 C -0.024 4.024 6 C -0.164 4.164 7 C -0.226 4.226 8 C 0.594 3.406 9 O -0.553 6.553 10 N -0.697 5.697 11 C 0.159 3.841 12 C -0.147 4.147 13 C -0.147 4.147 14 C 0.179 3.821 15 N -0.602 5.602 16 C -0.217 4.217 17 H 0.075 0.925 18 C -0.011 4.011 19 N -0.926 5.926 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.131 3.869 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.144 0.856 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.250 0.750 39 H 0.023 0.977 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 12.193 -12.372 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.020 4.020 3 N -0.153 5.153 4 H 0.248 0.752 5 C -0.151 4.151 6 C -0.188 4.188 7 C -0.236 4.236 8 C 0.383 3.617 9 O -0.434 6.434 10 N -0.346 5.346 11 C 0.072 3.928 12 C -0.206 4.206 13 C -0.185 4.185 14 C 0.054 3.946 15 N -0.328 5.328 16 C -0.346 4.346 17 H 0.093 0.907 18 C -0.207 4.207 19 N -0.575 5.575 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.214 1.214 24 C 0.004 3.996 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.184 0.816 29 H 0.162 0.838 30 H 0.230 0.770 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.618 12.064 -12.157 17.326 hybrid contribution 0.572 0.664 1.157 1.451 sum -2.046 12.728 -11.000 16.947 Atomic orbital electron populations 1.20543 0.87131 1.03825 1.03468 1.20316 0.93661 0.85642 1.02336 1.41548 1.06261 1.08205 1.59249 0.75156 1.21645 0.85577 0.96433 1.11418 1.22074 0.96072 0.93633 1.07064 1.20285 0.93079 0.92526 1.17672 1.17196 0.85422 0.83749 0.75368 1.90658 1.16676 1.84300 1.51739 1.45548 1.09253 1.05230 1.74567 1.21469 0.95664 0.80144 0.95555 1.21978 1.00961 1.01594 0.96072 1.23266 0.96192 0.98144 1.00946 1.21130 0.89021 0.99674 0.84796 1.44416 1.07355 1.79794 1.01248 1.19020 0.96657 1.38471 0.80419 0.90732 1.24741 0.95895 1.02207 0.97832 1.69940 1.01855 1.53161 1.32508 0.86225 0.76648 0.77789 0.85304 1.21277 1.21698 1.21368 1.21887 0.92197 0.98081 0.87408 0.90526 0.92346 0.87920 0.81624 0.83821 0.76995 0.91017 0.93276 0.92098 0.91923 0.91048 0.93737 0.93988 0.93939 0.95986 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.88 36.00 0.36 -0.74 16 2 C 0.10 1.33 7.17 -81.88 -0.59 0.74 16 3 N -0.56 -5.74 5.90 -9.11 -0.05 -5.79 16 4 H 0.41 2.72 8.96 -40.82 -0.37 2.35 16 5 C -0.02 -0.26 11.89 -16.83 -0.20 -0.46 16 6 C -0.16 -2.22 10.56 -37.50 -0.40 -2.62 16 7 C -0.23 -3.63 6.29 -103.35 -0.65 -4.28 16 8 C 0.59 11.09 7.20 -12.59 -0.09 10.99 16 9 O -0.55 -11.34 11.61 5.25 0.06 -11.28 16 10 N -0.70 -12.59 5.17 -46.59 -0.24 -12.83 16 11 C 0.16 2.99 0.83 -129.51 -0.11 2.89 16 12 C -0.15 -2.39 8.60 37.16 0.32 -2.08 16 13 C -0.15 -2.75 6.00 -24.74 -0.15 -2.90 16 14 C 0.18 4.39 5.36 -3.06 -0.02 4.37 16 15 N -0.60 -16.07 3.39 -170.08 -0.58 -16.65 16 16 C -0.22 -6.36 10.28 -15.06 -0.15 -6.52 16 17 H 0.07 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.93 -27.76 10.31 55.49 0.57 -27.19 16 20 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C 0.13 3.03 6.10 -2.53 -0.02 3.01 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.42 6.47 -51.93 -0.34 1.09 16 28 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.14 1.76 7.70 -52.48 -0.40 1.35 16 30 H 0.40 6.54 7.62 -40.82 -0.31 6.23 16 31 H 0.07 1.25 6.53 -51.93 -0.34 0.91 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 35 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 36 H 0.04 1.19 7.38 -51.93 -0.38 0.81 16 37 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.51 8.04 -51.93 -0.42 0.10 16 40 H 0.06 1.42 6.31 -51.93 -0.33 1.10 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -34.46 322.25 -7.96 -42.42 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.77 Total: 6.50 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.79 Total: 1.99 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.30 Total: -62.46 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.06 Total: -11.28 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.46 -7.96 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046229652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.525 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds