Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34666 * 125.80213 * 2 1 4 4 H 0.96998 * 124.84801 * 359.97438 * 3 2 1 5 5 C 1.36446 * 110.29599 * 180.02562 * 3 2 1 6 6 C 1.34476 * 108.85928 * 359.74941 * 5 3 2 7 7 C 1.36774 * 125.80313 * 180.02562 * 2 1 3 8 8 C 1.47261 * 126.93946 * 359.92778 * 7 2 1 9 9 O 1.21627 * 120.00122 * 0.02562 * 8 7 2 10 10 N 1.34778 * 119.99817 * 180.02562 * 8 7 2 11 11 C 1.46502 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53000 * 110.91392 * 62.45132 * 11 10 8 13 13 C 1.55448 * 111.01096 * 186.50321 * 11 10 8 14 14 C 1.54321 * 102.96961 * 82.52411 * 13 11 10 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46531 * 60.00328 * 20 18 16 22 22 H 1.48502 * 109.47014 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47009 * 300.00047 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 H 1.09000 * 109.46931 * 269.97434 * 1 2 3 26 26 H 1.08997 * 109.47728 * 29.96886 * 1 2 3 27 27 H 1.09002 * 109.47698 * 149.97453 * 1 2 3 28 28 H 1.08001 * 125.56854 * 180.02562 * 5 3 2 29 29 H 1.08008 * 126.83715 * 180.25844 * 6 5 3 30 30 H 0.97001 * 120.00073 * 0.02562 * 10 8 7 31 31 H 1.09000 * 109.47194 * 297.54709 * 12 11 10 32 32 H 1.09001 * 109.47578 * 57.55154 * 12 11 10 33 33 H 1.09003 * 109.46933 * 177.54882 * 12 11 10 34 34 H 1.08998 * 110.70855 * 324.15215 * 13 11 10 35 35 H 1.08998 * 110.85957 * 200.96831 * 13 11 10 36 36 H 1.08998 * 109.88101 * 262.77542 * 14 13 11 37 37 H 1.09000 * 109.88483 * 141.60664 * 14 13 11 38 38 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 40 40 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6095 0.7274 -0.0006 6 6 3.6882 -0.6150 0.0046 7 6 2.3070 -1.1093 -0.0005 8 6 1.8702 -2.5156 0.0004 9 8 0.6839 -2.7839 0.0012 10 7 2.7850 -3.5054 0.0002 11 6 2.3503 -4.9045 0.0005 12 6 1.5567 -5.2301 -1.2664 13 6 3.5619 -5.8644 0.1647 14 6 3.7918 -5.8743 1.6906 15 7 2.5297 -5.4660 2.3247 16 6 2.3209 -5.3286 3.6711 17 1 1.3527 -5.0225 4.0390 18 6 3.3536 -5.5828 4.5632 19 7 4.5334 -5.9563 4.1149 20 14 3.0690 -5.3947 6.3998 21 1 1.9880 -6.3176 6.8300 22 1 4.3194 -5.7229 7.1306 23 1 2.6732 -3.9951 6.6985 24 6 1.5260 -5.2295 1.2711 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3634 -0.8897 -0.5142 28 1 4.4497 1.4060 -0.0003 29 1 4.5890 -1.2109 0.0095 30 1 3.7311 -3.2914 0.0000 31 1 0.6536 -4.6205 -1.2962 32 1 2.1682 -5.0167 -2.1432 33 1 1.2829 -6.2852 -1.2624 34 1 4.4368 -5.4731 -0.3546 35 1 3.3168 -6.8638 -0.1949 36 1 4.5821 -5.1703 1.9510 37 1 4.0635 -6.8778 2.0182 38 1 5.2553 -6.1336 4.7382 39 1 0.9233 -6.1240 1.1137 40 1 0.8892 -4.3857 1.5363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046229652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = 8.886387 kcal Electronic energy + Delta-G solvation = -22238.865490 eV Core-core repulsion = 19053.925242 eV Total energy + Delta-G solvation = -3184.940248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11490 -40.72925 -38.55109 -35.59480 -33.68930 -32.39781 -32.22539 -31.13029 -30.25709 -27.48948 -27.24511 -25.44801 -23.87420 -22.12613 -21.67180 -20.62922 -20.10427 -18.85188 -18.49296 -17.06562 -16.86729 -16.56498 -16.10411 -15.63315 -15.46964 -15.03482 -14.66452 -14.36647 -14.09855 -13.95687 -13.83233 -13.56029 -13.49067 -13.38940 -13.34815 -12.98953 -12.80011 -12.72986 -12.42977 -12.10556 -12.03074 -11.93478 -11.66701 -11.48822 -10.69325 -10.49678 -9.92255 -9.65078 -9.06035 -8.83157 -7.84112 -5.17440 0.85109 1.42394 1.46004 1.52364 1.59281 2.22878 2.49203 2.62319 2.74743 3.33546 3.61613 3.75583 3.97789 4.10597 4.17875 4.23864 4.34349 4.37788 4.66651 4.69546 4.74111 4.74999 4.88451 4.91234 4.96761 5.01438 5.07545 5.09736 5.14605 5.34651 5.40417 5.43743 5.68050 5.75542 5.83222 5.87787 6.03498 6.21780 6.70911 6.86894 7.13250 7.54438 7.79551 8.44575 9.25863 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.005907 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.046034 B = 4738.761670 C = 5498.843265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.095 3.905 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.001 4.001 6 C -0.193 4.193 7 C -0.270 4.270 8 C 0.585 3.415 9 O -0.582 6.582 10 N -0.698 5.698 11 C 0.168 3.832 12 C -0.137 4.137 13 C -0.129 4.129 14 C 0.187 3.813 15 N -0.620 5.620 16 C -0.242 4.242 17 H 0.067 0.933 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.975 3.025 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.282 1.282 24 C 0.128 3.872 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.209 0.791 29 H 0.149 0.851 30 H 0.403 0.597 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.015 0.985 37 H 0.009 0.991 38 H 0.248 0.752 39 H 0.023 0.977 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 13.980 -13.364 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 N -0.136 5.136 4 H 0.273 0.727 5 C -0.129 4.129 6 C -0.217 4.217 7 C -0.280 4.280 8 C 0.375 3.625 9 O -0.465 6.465 10 N -0.347 5.347 11 C 0.080 3.920 12 C -0.195 4.195 13 C -0.167 4.167 14 C 0.062 3.938 15 N -0.346 5.346 16 C -0.371 4.371 17 H 0.085 0.915 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.803 3.197 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.002 3.998 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.225 0.775 29 H 0.166 0.834 30 H 0.238 0.762 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.033 0.967 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.117 13.884 -13.174 19.256 hybrid contribution 0.388 0.172 1.484 1.544 sum -1.729 14.056 -11.690 18.363 Atomic orbital electron populations 1.20500 0.86400 1.04452 1.03279 1.20479 0.94376 0.86057 1.01525 1.41551 1.05907 1.08583 1.57521 0.72678 1.22242 0.86506 0.96029 1.08099 1.22269 0.95222 0.95160 1.09058 1.20355 0.95165 0.91732 1.20775 1.17701 0.85107 0.85013 0.74651 1.90631 1.17757 1.84969 1.53104 1.45554 1.09660 1.04891 1.74623 1.21374 0.95109 0.80850 0.94623 1.21890 1.00194 1.02188 0.95267 1.23144 0.97446 0.99568 0.96557 1.20917 0.87526 0.96686 0.88660 1.44664 1.08857 1.79803 1.01252 1.19294 0.96657 1.38873 0.82267 0.91524 1.25537 0.95693 1.02081 1.02085 1.70147 1.02312 1.53532 1.33588 0.85214 0.76672 0.77829 0.79996 1.20482 1.21315 1.20864 1.21986 0.92004 0.96997 0.88786 0.91032 0.88638 0.90365 0.77476 0.83379 0.76231 0.92541 0.90798 0.90627 0.88754 0.88968 0.96686 0.97309 0.94312 0.95896 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 9.88 71.23 0.70 -1.34 16 2 C 0.09 2.46 7.17 41.78 0.30 2.76 16 3 N -0.54 -9.50 5.90 -182.73 -1.08 -10.58 16 4 H 0.43 4.04 8.96 -92.71 -0.83 3.21 16 5 C 0.00 -0.02 11.89 83.11 0.99 0.97 16 6 C -0.19 -4.99 10.56 23.62 0.25 -4.74 16 7 C -0.27 -8.66 6.29 -19.04 -0.12 -8.78 16 8 C 0.58 22.30 7.20 86.62 0.62 22.92 16 9 O -0.58 -24.74 11.61 -4.12 -0.05 -24.79 16 10 N -0.70 -25.34 5.17 -419.55 -2.17 -27.51 16 11 C 0.17 6.27 0.83 5.10 0.00 6.27 16 12 C -0.14 -4.24 8.60 71.98 0.62 -3.63 16 13 C -0.13 -4.67 6.00 31.88 0.19 -4.48 16 14 C 0.19 9.40 5.36 86.73 0.47 9.87 16 15 N -0.62 -34.15 3.39 -692.01 -2.35 -36.50 16 16 C -0.24 -14.63 10.28 84.03 0.86 -13.76 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 19 N -0.95 -58.12 10.31 21.65 0.22 -57.90 16 20 Si 0.97 47.98 29.55 68.60 2.03 50.01 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.13 6.10 6.10 86.85 0.53 6.63 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 2.22 6.47 -2.39 -0.02 2.21 16 28 H 0.21 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.15 3.51 7.70 -2.91 -0.02 3.49 16 30 H 0.40 13.28 7.62 -92.71 -0.71 12.58 16 31 H 0.06 1.95 6.53 -2.39 -0.02 1.93 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 34 H 0.09 2.85 8.05 -2.39 -0.02 2.83 16 35 H 0.09 3.00 8.03 -2.39 -0.02 2.98 16 36 H 0.01 0.83 7.38 -2.39 -0.02 0.81 16 37 H 0.01 0.49 7.51 -2.39 -0.02 0.47 16 38 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 39 H 0.02 1.09 8.04 -2.39 -0.02 1.07 16 40 H 0.03 1.62 6.31 -2.39 -0.02 1.60 16 Total: -1.00 -78.24 322.25 2.02 -76.22 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.47 Total: 21.51 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.88 Total: 9.53 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -5.37 Total: -132.48 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -78.24 2.02 -76.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046229652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.106 kcal (2) G-P(sol) polarization free energy of solvation -78.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds