Wall clock time and date at job start Mon Mar 30 2020 01:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36442 * 124.84820 * 2 1 4 4 C 1.34489 * 108.85926 * 179.72971 * 3 2 1 5 5 C 1.46697 * 106.32627 * 0.37486 * 4 3 2 6 6 C 1.47266 * 126.93877 * 179.88780 * 5 4 3 7 7 O 1.21628 * 119.99646 * 179.68681 * 6 5 4 8 8 N 1.34770 * 119.99738 * 359.96015 * 6 5 4 9 9 C 1.46506 * 119.99881 * 179.72062 * 8 6 5 10 10 C 1.53004 * 110.88531 * 303.88772 * 9 8 6 11 11 C 1.55158 * 111.00636 * 180.02562 * 9 8 6 12 12 C 1.54324 * 102.93924 * 277.42888 * 11 9 8 13 13 N 1.47018 * 107.27622 * 337.80678 * 12 11 9 14 14 C 1.36938 * 125.64974 * 178.98490 * 13 12 11 15 15 H 1.08004 * 119.99743 * 174.78883 * 14 13 12 16 16 C 1.38804 * 120.00089 * 354.79061 * 14 13 12 17 17 N 1.31614 * 120.00102 * 7.05071 * 16 14 13 18 18 Si 1.86802 * 119.99975 * 187.05147 * 16 14 13 19 19 H 1.48501 * 109.46955 * 94.98887 * 18 16 14 20 20 H 1.48503 * 109.47015 * 214.98544 * 18 16 14 21 21 H 1.48496 * 109.47107 * 334.98698 * 18 16 14 22 22 C 1.47429 * 108.69993 * 358.94228 * 13 12 11 23 23 C 1.34655 * 124.85052 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46562 * 270.02128 * 1 2 3 25 25 H 1.08993 * 109.47206 * 30.02594 * 1 2 3 26 26 H 1.08997 * 109.46802 * 150.03053 * 1 2 3 27 27 H 1.08008 * 125.57268 * 359.97438 * 3 2 1 28 28 H 1.07996 * 126.83932 * 180.23111 * 4 3 2 29 29 H 0.97004 * 120.00520 * 359.72866 * 8 6 5 30 30 H 1.08993 * 109.47310 * 59.29192 * 10 9 8 31 31 H 1.09001 * 109.46800 * 179.29732 * 10 9 8 32 32 H 1.08999 * 109.46411 * 299.29109 * 10 9 8 33 33 H 1.08998 * 110.71728 * 35.78856 * 11 9 8 34 34 H 1.08991 * 110.71826 * 158.89108 * 11 9 8 35 35 H 1.09002 * 109.88096 * 97.22971 * 12 11 9 36 36 H 1.08997 * 109.87848 * 218.39015 * 12 11 9 37 37 H 0.96999 * 120.00386 * 180.02562 * 17 16 14 38 38 H 1.08997 * 110.36715 * 265.28787 * 22 13 12 39 39 H 1.09006 * 110.36520 * 142.96466 * 22 13 12 40 40 H 1.07997 * 125.80586 * 0.03494 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5376 0.7493 0.0060 5 6 3.5462 -0.7176 0.0008 6 6 4.7285 -1.5957 0.0020 7 8 4.5886 -2.8039 0.0029 8 7 5.9653 -1.0604 0.0077 9 6 7.1415 -1.9339 0.0152 10 6 7.0980 -2.8973 1.2030 11 6 8.4516 -1.1027 0.0215 12 6 8.6474 -0.7549 -1.4693 13 7 7.8966 -1.7479 -2.2515 14 6 7.7976 -1.7791 -3.6169 15 1 7.2906 -2.5996 -4.1029 16 6 8.3489 -0.7564 -4.3763 17 7 9.0848 0.1692 -3.7984 18 14 8.0463 -0.6936 -6.2186 19 1 6.8926 0.1978 -6.5006 20 1 9.2561 -0.1684 -6.9013 21 1 7.7499 -2.0601 -6.7184 22 6 7.2688 -2.7050 -1.3223 23 6 2.2345 -1.1050 0.0005 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 1.8828 2.1374 -0.0004 28 1 4.3981 1.4018 0.0111 29 1 6.0769 -0.0968 0.0070 30 1 6.1963 -3.5068 1.1437 31 1 7.9756 -3.5433 1.1792 32 1 7.0911 -2.3278 2.1324 33 1 8.3309 -0.1971 0.6160 34 1 9.2846 -1.6987 0.3938 35 1 8.2615 0.2444 -1.6706 36 1 9.7057 -0.8045 -1.7255 37 1 9.4697 0.8842 -4.3290 38 1 7.9031 -3.5823 -1.1955 39 1 6.2840 -2.9973 -1.6869 40 1 1.8768 -2.1240 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046240036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:11 Heat of formation + Delta-G solvation = 45.290956 kcal Electronic energy + Delta-G solvation = -21959.599649 eV Core-core repulsion = 18776.238022 eV Total energy + Delta-G solvation = -3183.361627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12179 -39.29503 -36.95478 -33.73486 -32.89462 -31.56224 -29.89920 -29.03600 -28.53360 -26.62317 -25.54364 -23.65470 -22.52390 -20.39807 -20.15109 -19.39347 -18.65899 -17.81555 -16.70365 -15.48669 -15.45595 -15.32730 -14.54109 -14.22738 -14.20480 -13.63701 -13.58438 -13.07175 -13.01033 -12.68446 -12.53936 -12.39441 -11.92127 -11.87633 -11.75405 -11.65401 -11.52823 -10.81676 -10.79717 -10.23841 -10.22228 -9.98630 -9.87439 -9.58024 -9.07201 -8.58347 -8.50981 -8.36638 -8.15700 -6.69097 -5.63067 -2.92891 2.00415 2.52462 2.80328 3.46305 3.51687 3.53575 3.87762 4.05273 4.55643 4.59255 4.88485 4.90366 5.03587 5.13041 5.21499 5.48592 5.51807 5.57488 5.62804 5.76132 5.85914 5.98163 6.11751 6.20216 6.31734 6.32164 6.51292 6.54545 6.69403 6.82044 6.86281 6.94629 7.07426 7.23836 7.36057 7.63262 7.68797 7.89685 8.23289 8.36060 8.91889 9.32817 9.93324 10.60549 11.49565 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.005597 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.982282 B = 5001.320520 C = 6044.683969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.452 5.452 3 C -0.023 4.023 4 C -0.165 4.165 5 C -0.224 4.224 6 C 0.593 3.407 7 O -0.558 6.558 8 N -0.696 5.696 9 C 0.159 3.841 10 C -0.152 4.152 11 C -0.147 4.147 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.907 3.093 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.133 3.867 23 C 0.067 3.933 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.398 0.602 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.250 0.750 38 H 0.024 0.976 39 H 0.051 0.949 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 2.360 11.705 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.128 5.128 3 C -0.149 4.149 4 C -0.189 4.189 5 C -0.234 4.234 6 C 0.382 3.618 7 O -0.438 6.438 8 N -0.345 5.345 9 C 0.072 3.928 10 C -0.210 4.210 11 C -0.186 4.186 12 C 0.052 3.948 13 N -0.329 5.329 14 C -0.347 4.347 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.207 1.207 22 C 0.006 3.994 23 C -0.068 4.068 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.182 0.818 28 H 0.163 0.837 29 H 0.232 0.768 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.387 1.658 11.510 18.499 hybrid contribution -0.072 0.752 -1.124 1.355 sum -14.459 2.411 10.386 17.965 Atomic orbital electron populations 1.22067 0.77248 1.04528 1.03224 1.43566 1.06541 1.05989 1.56697 1.21684 0.90622 0.91116 1.11509 1.22098 0.96159 0.93490 1.07136 1.20502 0.92790 0.93394 1.16672 1.17247 0.82268 0.86939 0.75387 1.90680 1.86624 1.14601 1.51898 1.45572 1.04725 1.09864 1.74319 1.21430 0.84474 0.90973 0.95935 1.22032 1.03288 0.99359 0.96329 1.23215 0.95464 0.98982 1.00895 1.21145 0.96393 0.93240 0.83974 1.44440 1.57293 1.29650 1.01532 1.19070 1.30377 1.05007 0.80290 0.90631 1.24755 1.00281 0.97519 0.97914 1.69964 1.37319 1.15943 1.33904 0.86154 0.77166 0.77514 0.85358 1.21813 1.21870 1.20707 1.21879 0.96874 0.92041 0.88585 1.21730 0.89883 0.91564 1.03616 0.90904 0.89773 0.89732 0.81845 0.83704 0.76829 0.90301 0.92172 0.93340 0.91840 0.91009 0.93533 0.94124 0.93967 0.95873 0.93113 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.04 59.85 0.66 1.09 16 2 N -0.45 -4.89 3.09 -124.53 -0.38 -5.27 16 3 C -0.02 -0.26 11.34 -16.83 -0.19 -0.45 16 4 C -0.16 -2.26 10.56 -37.49 -0.40 -2.65 16 5 C -0.22 -3.60 6.29 -103.35 -0.65 -4.25 16 6 C 0.59 11.22 7.18 -12.59 -0.09 11.13 16 7 O -0.56 -11.82 13.77 5.25 0.07 -11.75 16 8 N -0.70 -12.77 5.18 -46.73 -0.24 -13.02 16 9 C 0.16 3.04 0.82 -129.66 -0.11 2.94 16 10 C -0.15 -2.54 8.52 37.16 0.32 -2.23 16 11 C -0.15 -2.77 5.97 -24.90 -0.15 -2.91 16 12 C 0.18 4.35 5.37 -3.07 -0.02 4.33 16 13 N -0.60 -16.10 3.39 -170.07 -0.58 -16.68 16 14 C -0.22 -6.40 10.26 -15.06 -0.15 -6.56 16 15 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 16 C -0.01 -0.26 5.48 -17.44 -0.10 -0.36 16 17 N -0.92 -27.53 10.36 55.49 0.57 -26.96 16 18 Si 0.91 22.90 29.56 -169.99 -5.02 17.87 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.13 3.09 6.17 -2.53 -0.02 3.08 16 23 C 0.07 0.90 11.12 -16.84 -0.19 0.72 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 26 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.15 1.81 7.69 -52.49 -0.40 1.40 16 29 H 0.40 6.73 7.63 -40.82 -0.31 6.42 16 30 H 0.08 1.44 6.00 -51.93 -0.31 1.13 16 31 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 35 H 0.05 1.24 7.30 -51.93 -0.38 0.86 16 36 H 0.04 1.10 7.61 -51.93 -0.40 0.70 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 39 H 0.05 1.28 6.86 -51.93 -0.36 0.92 16 40 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -34.90 326.98 -7.64 -42.54 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.92 Total: 4.46 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.08 Total: 3.87 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.63 Total: -61.92 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.90 -7.64 -42.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046240036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.834 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds