Wall clock time and date at job start Mon Mar 30 2020 01:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36442 * 124.84820 * 2 1 4 4 C 1.34489 * 108.85926 * 179.72971 * 3 2 1 5 5 C 1.46697 * 106.32627 * 0.37486 * 4 3 2 6 6 C 1.47266 * 126.93877 * 179.88780 * 5 4 3 7 7 O 1.21628 * 119.99646 * 179.68681 * 6 5 4 8 8 N 1.34770 * 119.99738 * 359.96015 * 6 5 4 9 9 C 1.46506 * 119.99881 * 179.72062 * 8 6 5 10 10 C 1.53004 * 110.88531 * 303.88772 * 9 8 6 11 11 C 1.55158 * 111.00636 * 180.02562 * 9 8 6 12 12 C 1.54324 * 102.93924 * 277.42888 * 11 9 8 13 13 N 1.47018 * 107.27622 * 337.80678 * 12 11 9 14 14 C 1.36938 * 125.64974 * 178.98490 * 13 12 11 15 15 H 1.08004 * 119.99743 * 174.78883 * 14 13 12 16 16 C 1.38804 * 120.00089 * 354.79061 * 14 13 12 17 17 N 1.31614 * 120.00102 * 7.05071 * 16 14 13 18 18 Si 1.86802 * 119.99975 * 187.05147 * 16 14 13 19 19 H 1.48501 * 109.46955 * 94.98887 * 18 16 14 20 20 H 1.48503 * 109.47015 * 214.98544 * 18 16 14 21 21 H 1.48496 * 109.47107 * 334.98698 * 18 16 14 22 22 C 1.47429 * 108.69993 * 358.94228 * 13 12 11 23 23 C 1.34655 * 124.85052 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46562 * 270.02128 * 1 2 3 25 25 H 1.08993 * 109.47206 * 30.02594 * 1 2 3 26 26 H 1.08997 * 109.46802 * 150.03053 * 1 2 3 27 27 H 1.08008 * 125.57268 * 359.97438 * 3 2 1 28 28 H 1.07996 * 126.83932 * 180.23111 * 4 3 2 29 29 H 0.97004 * 120.00520 * 359.72866 * 8 6 5 30 30 H 1.08993 * 109.47310 * 59.29192 * 10 9 8 31 31 H 1.09001 * 109.46800 * 179.29732 * 10 9 8 32 32 H 1.08999 * 109.46411 * 299.29109 * 10 9 8 33 33 H 1.08998 * 110.71728 * 35.78856 * 11 9 8 34 34 H 1.08991 * 110.71826 * 158.89108 * 11 9 8 35 35 H 1.09002 * 109.88096 * 97.22971 * 12 11 9 36 36 H 1.08997 * 109.87848 * 218.39015 * 12 11 9 37 37 H 0.96999 * 120.00386 * 180.02562 * 17 16 14 38 38 H 1.08997 * 110.36715 * 265.28787 * 22 13 12 39 39 H 1.09006 * 110.36520 * 142.96466 * 22 13 12 40 40 H 1.07997 * 125.80586 * 0.03494 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5376 0.7493 0.0060 5 6 3.5462 -0.7176 0.0008 6 6 4.7285 -1.5957 0.0020 7 8 4.5886 -2.8039 0.0029 8 7 5.9653 -1.0604 0.0077 9 6 7.1415 -1.9339 0.0152 10 6 7.0980 -2.8973 1.2030 11 6 8.4516 -1.1027 0.0215 12 6 8.6474 -0.7549 -1.4693 13 7 7.8966 -1.7479 -2.2515 14 6 7.7976 -1.7791 -3.6169 15 1 7.2906 -2.5996 -4.1029 16 6 8.3489 -0.7564 -4.3763 17 7 9.0848 0.1692 -3.7984 18 14 8.0463 -0.6936 -6.2186 19 1 6.8926 0.1978 -6.5006 20 1 9.2561 -0.1684 -6.9013 21 1 7.7499 -2.0601 -6.7184 22 6 7.2688 -2.7050 -1.3223 23 6 2.2345 -1.1050 0.0005 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 1.8828 2.1374 -0.0004 28 1 4.3981 1.4018 0.0111 29 1 6.0769 -0.0968 0.0070 30 1 6.1963 -3.5068 1.1437 31 1 7.9756 -3.5433 1.1792 32 1 7.0911 -2.3278 2.1324 33 1 8.3309 -0.1971 0.6160 34 1 9.2846 -1.6987 0.3938 35 1 8.2615 0.2444 -1.6706 36 1 9.7057 -0.8045 -1.7255 37 1 9.4697 0.8842 -4.3290 38 1 7.9031 -3.5823 -1.1955 39 1 6.2840 -2.9973 -1.6869 40 1 1.8768 -2.1240 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046240036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:11 Heat of formation + Delta-G solvation = 21.895717 kcal Electronic energy + Delta-G solvation = -21960.614143 eV Core-core repulsion = 18776.238022 eV Total energy + Delta-G solvation = -3184.376121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09912 -40.79806 -38.62854 -35.57970 -33.98204 -33.21554 -31.59903 -30.38174 -29.96188 -27.51810 -27.39496 -25.43781 -23.81984 -22.12752 -21.42903 -20.56883 -20.14855 -19.08794 -18.55890 -17.01710 -16.69933 -16.61110 -16.29016 -15.75142 -15.50026 -15.33154 -14.91365 -14.44259 -14.14998 -13.89759 -13.84457 -13.53920 -13.39350 -13.25918 -13.10896 -12.97997 -12.88190 -12.80372 -12.72542 -12.07056 -12.01304 -11.95696 -11.68949 -11.54408 -10.68734 -10.55897 -9.93170 -9.46374 -9.24518 -8.84310 -7.85959 -5.18397 0.85698 1.42988 1.44838 1.53980 1.56104 1.97584 2.48661 2.53723 2.72177 3.32006 3.62551 3.73780 4.01611 4.07826 4.08402 4.11609 4.23205 4.38652 4.49577 4.62340 4.65757 4.72554 4.75722 4.86110 4.89335 4.94195 5.04109 5.05429 5.12037 5.18418 5.41256 5.44654 5.66883 5.74007 5.79325 5.84870 6.10797 6.20916 6.40412 6.82680 7.12397 7.49619 7.78037 8.43633 9.24660 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.005597 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.982282 B = 5001.320520 C = 6044.683969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.444 5.444 3 C -0.008 4.008 4 C -0.191 4.191 5 C -0.267 4.267 6 C 0.586 3.414 7 O -0.591 6.591 8 N -0.696 5.696 9 C 0.167 3.833 10 C -0.141 4.141 11 C -0.128 4.128 12 C 0.186 3.814 13 N -0.621 5.621 14 C -0.244 4.244 15 H 0.068 0.932 16 C -0.057 4.057 17 N -0.944 5.944 18 Si 0.973 3.027 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.131 3.869 23 C 0.066 3.934 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.203 0.797 28 H 0.148 0.852 29 H 0.403 0.597 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.019 0.981 36 H 0.008 0.992 37 H 0.248 0.752 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.693 3.417 12.597 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.119 5.119 3 C -0.135 4.135 4 C -0.214 4.214 5 C -0.277 4.277 6 C 0.377 3.623 7 O -0.474 6.474 8 N -0.345 5.345 9 C 0.079 3.921 10 C -0.200 4.200 11 C -0.167 4.167 12 C 0.061 3.939 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.085 0.915 16 C -0.250 4.250 17 N -0.592 5.592 18 Si 0.801 3.199 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.199 1.199 22 C 0.005 3.995 23 C -0.071 4.071 24 H 0.110 0.890 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.219 0.781 28 H 0.166 0.834 29 H 0.239 0.761 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.077 2.727 12.423 20.500 hybrid contribution 0.352 0.422 -1.425 1.527 sum -15.724 3.149 10.998 19.446 Atomic orbital electron populations 1.22449 0.74103 1.06212 1.05010 1.43910 1.08392 1.04992 1.54564 1.22241 0.89814 0.92642 1.08760 1.22261 0.97800 0.92426 1.08944 1.20507 0.92708 0.94472 1.20005 1.17749 0.83090 0.86991 0.74495 1.90644 1.87134 1.16039 1.53549 1.45577 1.04575 1.10071 1.74303 1.21348 0.85058 0.91131 0.94523 1.21943 1.03140 0.98908 0.95970 1.23094 0.95895 1.00667 0.97027 1.20938 0.93874 0.91636 0.87458 1.44689 1.57909 1.30677 1.01433 1.19330 1.30681 1.05274 0.82047 0.91457 1.25526 1.00061 0.97211 1.02223 1.70156 1.37674 1.16181 1.35229 0.85150 0.76927 0.77695 0.80130 1.21445 1.21461 1.19899 1.21973 0.95024 0.92215 0.90303 1.21869 0.89618 0.92765 1.02804 0.89023 0.87543 0.88742 0.78066 0.83397 0.76149 0.92013 0.90688 0.90910 0.88710 0.88903 0.96306 0.97368 0.94251 0.95681 0.95842 0.80334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 11.04 127.77 1.41 1.94 16 2 N -0.44 -8.49 3.09 -547.88 -1.69 -10.18 16 3 C -0.01 -0.15 11.34 83.12 0.94 0.79 16 4 C -0.19 -5.06 10.56 23.62 0.25 -4.81 16 5 C -0.27 -8.61 6.29 -19.04 -0.12 -8.73 16 6 C 0.59 22.66 7.18 86.62 0.62 23.28 16 7 O -0.59 -25.84 13.77 -4.12 -0.06 -25.90 16 8 N -0.70 -25.74 5.18 -420.00 -2.17 -27.91 16 9 C 0.17 6.33 0.82 5.00 0.00 6.34 16 10 C -0.14 -4.54 8.52 71.98 0.61 -3.92 16 11 C -0.13 -4.68 5.97 31.78 0.19 -4.49 16 12 C 0.19 9.30 5.37 86.73 0.47 9.77 16 13 N -0.62 -34.18 3.39 -691.99 -2.35 -36.53 16 14 C -0.24 -14.73 10.26 84.03 0.86 -13.86 16 15 H 0.07 4.04 7.84 -2.91 -0.02 4.02 16 16 C -0.06 -3.36 5.48 84.86 0.46 -2.89 16 17 N -0.94 -57.53 10.36 21.65 0.22 -57.30 16 18 Si 0.97 47.73 29.56 68.60 2.03 49.75 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 22 C 0.13 6.26 6.17 86.85 0.54 6.79 16 23 C 0.07 1.75 11.12 83.92 0.93 2.68 16 24 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.11 0.50 8.13 -2.39 -0.02 0.48 16 26 H 0.09 0.66 8.13 -2.39 -0.02 0.65 16 27 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.15 3.64 7.69 -2.91 -0.02 3.61 16 29 H 0.40 13.71 7.63 -92.71 -0.71 13.00 16 30 H 0.06 2.24 6.00 -2.39 -0.01 2.22 16 31 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.89 8.09 -2.39 -0.02 2.87 16 34 H 0.09 3.03 8.04 -2.39 -0.02 3.01 16 35 H 0.02 1.03 7.30 -2.39 -0.02 1.01 16 36 H 0.01 0.45 7.61 -2.39 -0.02 0.44 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 39 H 0.02 1.23 6.86 -2.38 -0.02 1.21 16 40 H 0.18 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -78.63 326.98 3.48 -75.14 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.33 Total: 20.06 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 7.17 Total: 12.88 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.99 Total: -131.93 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -78.63 3.48 -75.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046240036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.039 kcal (2) G-P(sol) polarization free energy of solvation -78.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds