Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39835 * 126.45495 * 2 1 4 4 C 1.35454 * 107.86590 * 179.97438 * 3 2 1 5 5 N 1.35533 * 108.86952 * 0.02562 * 4 3 2 6 6 H 0.97004 * 125.67975 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64527 * 359.97438 * 5 4 3 8 8 C 1.46683 * 126.23679 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00204 * 179.97438 * 8 7 5 10 10 N 1.34774 * 119.99752 * 359.97346 * 8 7 5 11 11 C 1.46506 * 120.00182 * 180.02562 * 10 8 7 12 12 C 1.53008 * 110.63496 * 298.31217 * 11 10 8 13 13 C 1.55149 * 110.72169 * 174.97639 * 11 10 8 14 14 C 1.54906 * 101.58371 * 277.13821 * 13 11 10 15 15 N 1.47432 * 104.83079 * 322.99308 * 14 13 11 16 16 C 1.36939 * 125.64843 * 204.09825 * 15 14 13 17 17 H 1.07995 * 119.99472 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99746 * 0.03381 * 16 15 14 19 19 N 1.31611 * 120.00016 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99432 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47077 * 90.00600 * 20 18 16 22 22 H 1.48497 * 109.46948 * 209.99845 * 20 18 16 23 23 H 1.48498 * 109.47654 * 330.00086 * 20 18 16 24 24 C 1.47026 * 108.70173 * 24.12383 * 15 14 13 25 25 H 1.08999 * 109.47246 * 90.02491 * 1 2 3 26 26 H 1.08993 * 109.46862 * 210.02482 * 1 2 3 27 27 H 1.09004 * 109.47191 * 330.02260 * 1 2 3 28 28 H 1.07998 * 126.06937 * 359.71161 * 3 2 1 29 29 H 1.07998 * 125.57010 * 179.97438 * 4 3 2 30 30 H 0.97006 * 120.00128 * 0.02562 * 10 8 7 31 31 H 1.08995 * 109.47039 * 59.29879 * 12 11 10 32 32 H 1.09001 * 109.46620 * 179.29713 * 12 11 10 33 33 H 1.08998 * 109.46969 * 299.29501 * 12 11 10 34 34 H 1.09001 * 111.00567 * 35.20934 * 13 11 10 35 35 H 1.09004 * 111.00536 * 159.05935 * 13 11 10 36 36 H 1.09000 * 110.36740 * 204.15283 * 14 13 11 37 37 H 1.08999 * 110.37054 * 81.82680 * 14 13 11 38 38 H 0.97012 * 119.99574 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.88251 * 239.53052 * 24 15 14 40 40 H 1.09000 * 110.00560 * 118.43634 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6624 0.0004 6 1 4.4191 -1.2243 0.0003 7 6 2.3264 -1.1088 0.0002 8 6 1.8899 -2.5092 0.0005 9 8 0.7027 -2.7766 0.0008 10 7 2.8037 -3.4998 0.0004 11 6 2.3679 -4.8986 0.0001 12 6 1.5590 -5.2116 1.2606 13 6 3.5847 -5.8527 -0.1270 14 6 3.8188 -5.8559 -1.6583 15 7 2.4678 -5.8107 -2.2467 16 6 2.1271 -6.2508 -3.4979 17 1 1.1050 -6.1731 -3.8378 18 6 3.0955 -6.7969 -4.3291 19 7 4.3410 -6.8921 -3.9144 20 14 2.6308 -7.3965 -6.0361 21 1 2.7783 -6.2839 -7.0087 22 1 3.5233 -8.5171 -6.4270 23 1 1.2217 -7.8650 -6.0297 24 6 1.5470 -5.2144 -1.2678 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 2.0136 2.1549 -0.0044 29 1 4.4973 1.3253 0.0003 30 1 3.7501 -3.2867 0.0005 31 1 0.6866 -4.5596 1.3037 32 1 1.2343 -6.2518 1.2349 33 1 2.1799 -5.0464 2.1411 34 1 4.4513 -5.4531 0.3998 35 1 3.3373 -6.8515 0.2326 36 1 4.3344 -6.7672 -1.9613 37 1 4.3918 -4.9779 -1.9563 38 1 5.0178 -7.2734 -4.4955 39 1 0.7521 -5.9208 -1.0284 40 1 1.1183 -4.2965 -1.6702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046281746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = 34.764781 kcal Electronic energy + Delta-G solvation = -22120.784700 eV Core-core repulsion = 18936.966623 eV Total energy + Delta-G solvation = -3183.818076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30178 -39.45847 -37.13246 -34.11350 -32.60087 -31.83618 -30.29201 -29.23303 -28.65907 -26.74961 -25.67090 -23.76827 -22.46242 -20.85784 -20.40882 -19.04750 -18.99572 -18.47581 -16.87029 -15.66773 -15.48695 -15.09334 -14.67947 -13.97944 -13.90448 -13.63159 -13.57765 -13.32080 -12.82890 -12.74355 -12.55473 -12.23630 -12.18445 -11.99022 -11.72778 -11.57497 -11.48651 -10.94017 -10.85921 -10.41244 -10.37608 -10.08330 -9.96153 -9.66997 -9.31543 -8.77594 -8.70382 -8.64487 -8.09069 -6.80890 -5.65292 -3.05239 1.58485 2.75040 3.11142 3.40076 3.41774 3.46302 3.48306 3.63278 4.50429 4.94656 4.97114 5.15860 5.24116 5.36024 5.39430 5.49426 5.56032 5.72199 5.77954 5.94723 5.97962 6.01506 6.14578 6.18682 6.20010 6.33235 6.40794 6.44928 6.51208 6.69524 6.72662 6.87562 6.99172 7.14376 7.36979 7.42146 7.63923 7.78644 7.85655 8.34775 8.50528 9.23454 9.84250 10.48968 11.39285 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.004895 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.286727 B = 5718.298411 C = 6051.865221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.080 4.080 3 C -0.214 4.214 4 C 0.019 3.981 5 N -0.540 5.540 6 H 0.416 0.584 7 C -0.051 4.051 8 C 0.589 3.411 9 O -0.523 6.523 10 N -0.710 5.710 11 C 0.161 3.839 12 C -0.149 4.149 13 C -0.147 4.147 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.216 4.216 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.926 5.926 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.136 3.864 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.140 0.860 29 H 0.168 0.832 30 H 0.389 0.611 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.008 0.992 38 H 0.251 0.749 39 H 0.031 0.969 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 12.197 11.575 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.238 4.238 4 C -0.117 4.117 5 N -0.136 5.136 6 H 0.253 0.747 7 C -0.164 4.164 8 C 0.376 3.624 9 O -0.400 6.400 10 N -0.360 5.360 11 C 0.075 3.925 12 C -0.208 4.208 13 C -0.186 4.186 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.345 4.345 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.576 5.576 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.009 3.991 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.186 0.814 30 H 0.222 0.778 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.026 0.974 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.024 11.726 11.381 16.341 hybrid contribution 0.925 -0.222 -1.011 1.388 sum 0.948 11.504 10.369 15.517 Atomic orbital electron populations 1.20323 0.89394 1.02614 1.02230 1.19932 0.95880 0.90769 1.02287 1.20765 0.91893 0.98667 1.12516 1.21944 0.99454 0.83032 1.07259 1.41977 1.07322 1.07251 1.57052 0.74698 1.20435 0.83579 0.93956 1.18461 1.16975 0.86091 0.82729 0.76564 1.90769 1.15957 1.83030 1.50205 1.45892 1.08693 1.06179 1.75201 1.21360 0.96012 0.79335 0.95788 1.22038 1.00718 1.02227 0.95778 1.23361 0.95274 0.98317 1.01606 1.21926 0.87686 1.02339 0.85206 1.44501 1.04103 1.71230 1.13138 1.19114 0.94456 1.32012 0.88878 0.90498 1.24750 0.95478 1.01815 0.98767 1.69772 1.00665 1.51467 1.35656 0.86065 0.77414 0.78077 0.83954 1.21729 1.21673 1.20644 1.21615 0.92538 0.96584 0.88315 0.91601 0.90075 0.92368 0.84210 0.81438 0.77779 0.90903 0.91657 0.93221 0.92099 0.90393 0.87399 0.97439 0.93853 0.95106 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.83 36.01 0.35 -0.83 16 2 C -0.08 -1.14 6.21 -104.16 -0.65 -1.78 16 3 C -0.21 -2.47 10.76 -39.98 -0.43 -2.90 16 4 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -6.03 5.99 -9.39 -0.06 -6.08 16 6 H 0.42 3.57 8.19 -40.82 -0.33 3.23 16 7 C -0.05 -0.76 7.06 -81.98 -0.58 -1.34 16 8 C 0.59 10.08 7.01 -12.85 -0.09 9.99 16 9 O -0.52 -10.28 11.72 5.20 0.06 -10.22 16 10 N -0.71 -11.40 5.14 -47.20 -0.24 -11.65 16 11 C 0.16 2.89 0.81 -129.98 -0.11 2.78 16 12 C -0.15 -2.36 8.45 37.16 0.31 -2.04 16 13 C -0.15 -2.64 6.09 -24.59 -0.15 -2.79 16 14 C 0.15 3.63 5.87 -2.53 -0.01 3.62 16 15 N -0.60 -15.76 3.40 -170.07 -0.58 -16.34 16 16 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 19 N -0.93 -26.92 10.09 55.49 0.56 -26.36 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 C 0.14 3.08 6.13 -3.06 -0.02 3.06 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.21 6.48 -51.93 -0.34 0.87 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.39 5.27 7.60 -40.82 -0.31 4.96 16 31 H 0.07 1.24 6.37 -51.93 -0.33 0.91 16 32 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.91 8.04 -51.93 -0.42 0.50 16 35 H 0.08 1.38 8.05 -51.93 -0.42 0.97 16 36 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.25 7.08 8.31 -40.81 -0.34 6.74 16 39 H 0.03 0.71 7.80 -51.93 -0.41 0.30 16 40 H 0.04 0.89 6.47 -51.93 -0.34 0.55 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -33.19 320.89 -7.96 -41.15 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.70 Total: 6.30 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.82 Total: 0.94 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.32 Total: -60.43 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.06 Total: -10.22 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.19 -7.96 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046281746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.912 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds