Wall clock time and date at job start Mon Mar 30 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39835 * 126.45495 * 2 1 4 4 C 1.35454 * 107.86590 * 179.97438 * 3 2 1 5 5 N 1.35533 * 108.86952 * 0.02562 * 4 3 2 6 6 H 0.97004 * 125.67975 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64527 * 359.97438 * 5 4 3 8 8 C 1.46683 * 126.23679 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00204 * 179.97438 * 8 7 5 10 10 N 1.34774 * 119.99752 * 359.97346 * 8 7 5 11 11 C 1.46506 * 120.00182 * 180.02562 * 10 8 7 12 12 C 1.53008 * 110.63496 * 298.31217 * 11 10 8 13 13 C 1.55149 * 110.72169 * 174.97639 * 11 10 8 14 14 C 1.54906 * 101.58371 * 277.13821 * 13 11 10 15 15 N 1.47432 * 104.83079 * 322.99308 * 14 13 11 16 16 C 1.36939 * 125.64843 * 204.09825 * 15 14 13 17 17 H 1.07995 * 119.99472 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99746 * 0.03381 * 16 15 14 19 19 N 1.31611 * 120.00016 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99432 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47077 * 90.00600 * 20 18 16 22 22 H 1.48497 * 109.46948 * 209.99845 * 20 18 16 23 23 H 1.48498 * 109.47654 * 330.00086 * 20 18 16 24 24 C 1.47026 * 108.70173 * 24.12383 * 15 14 13 25 25 H 1.08999 * 109.47246 * 90.02491 * 1 2 3 26 26 H 1.08993 * 109.46862 * 210.02482 * 1 2 3 27 27 H 1.09004 * 109.47191 * 330.02260 * 1 2 3 28 28 H 1.07998 * 126.06937 * 359.71161 * 3 2 1 29 29 H 1.07998 * 125.57010 * 179.97438 * 4 3 2 30 30 H 0.97006 * 120.00128 * 0.02562 * 10 8 7 31 31 H 1.08995 * 109.47039 * 59.29879 * 12 11 10 32 32 H 1.09001 * 109.46620 * 179.29713 * 12 11 10 33 33 H 1.08998 * 109.46969 * 299.29501 * 12 11 10 34 34 H 1.09001 * 111.00567 * 35.20934 * 13 11 10 35 35 H 1.09004 * 111.00536 * 159.05935 * 13 11 10 36 36 H 1.09000 * 110.36740 * 204.15283 * 14 13 11 37 37 H 1.08999 * 110.37054 * 81.82680 * 14 13 11 38 38 H 0.97012 * 119.99574 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.88251 * 239.53052 * 24 15 14 40 40 H 1.09000 * 110.00560 * 118.43634 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6624 0.0004 6 1 4.4191 -1.2243 0.0003 7 6 2.3264 -1.1088 0.0002 8 6 1.8899 -2.5092 0.0005 9 8 0.7027 -2.7766 0.0008 10 7 2.8037 -3.4998 0.0004 11 6 2.3679 -4.8986 0.0001 12 6 1.5590 -5.2116 1.2606 13 6 3.5847 -5.8527 -0.1270 14 6 3.8188 -5.8559 -1.6583 15 7 2.4678 -5.8107 -2.2467 16 6 2.1271 -6.2508 -3.4979 17 1 1.1050 -6.1731 -3.8378 18 6 3.0955 -6.7969 -4.3291 19 7 4.3410 -6.8921 -3.9144 20 14 2.6308 -7.3965 -6.0361 21 1 2.7783 -6.2839 -7.0087 22 1 3.5233 -8.5171 -6.4270 23 1 1.2217 -7.8650 -6.0297 24 6 1.5470 -5.2144 -1.2678 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 2.0136 2.1549 -0.0044 29 1 4.4973 1.3253 0.0003 30 1 3.7501 -3.2867 0.0005 31 1 0.6866 -4.5596 1.3037 32 1 1.2343 -6.2518 1.2349 33 1 2.1799 -5.0464 2.1411 34 1 4.4513 -5.4531 0.3998 35 1 3.3373 -6.8515 0.2326 36 1 4.3344 -6.7672 -1.9613 37 1 4.3918 -4.9779 -1.9563 38 1 5.0178 -7.2734 -4.4955 39 1 0.7521 -5.9208 -1.0284 40 1 1.1183 -4.2965 -1.6702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046281746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:33 Heat of formation + Delta-G solvation = 11.874239 kcal Electronic energy + Delta-G solvation = -22121.777308 eV Core-core repulsion = 18936.966623 eV Total energy + Delta-G solvation = -3184.810685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.29981 -40.82854 -38.69964 -35.81603 -33.95551 -33.24019 -31.91887 -30.55943 -30.09609 -27.80271 -27.56502 -25.48572 -23.70785 -22.27172 -21.81493 -20.45050 -20.20001 -19.52374 -18.85890 -17.16458 -16.75009 -16.65834 -16.29922 -15.63140 -15.33543 -14.94627 -14.76811 -14.51107 -14.20978 -14.07414 -13.86507 -13.60695 -13.57019 -13.33926 -13.15258 -13.11945 -12.85928 -12.78934 -12.49810 -12.12916 -12.05534 -11.98598 -11.71030 -11.57151 -10.77812 -10.73179 -10.11066 -9.67622 -9.08735 -8.90679 -7.81543 -5.24742 0.51841 1.43532 1.44835 1.54124 1.86497 2.09994 2.29369 2.41719 2.46650 3.28110 3.56614 3.68043 3.97437 3.99403 4.14476 4.28000 4.28246 4.41700 4.60930 4.64056 4.75965 4.82675 4.88116 4.89398 4.91204 4.99166 5.01638 5.07895 5.19241 5.31566 5.40250 5.47304 5.57352 5.64058 5.77137 5.81864 6.01290 6.28203 6.52809 6.66539 7.08774 7.23960 7.74556 8.38079 9.19952 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.004895 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.286727 B = 5718.298411 C = 6051.865221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.096 4.096 3 C -0.230 4.230 4 C 0.046 3.954 5 N -0.532 5.532 6 H 0.428 0.572 7 C -0.089 4.089 8 C 0.584 3.416 9 O -0.559 6.559 10 N -0.704 5.704 11 C 0.172 3.828 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.156 3.844 15 N -0.622 5.622 16 C -0.244 4.244 17 H 0.069 0.931 18 C -0.059 4.059 19 N -0.944 5.944 20 Si 0.978 3.022 21 H -0.288 1.288 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.135 3.865 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.163 0.837 29 H 0.215 0.785 30 H 0.403 0.597 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.077 0.923 37 H -0.009 1.009 38 H 0.249 0.751 39 H 0.022 0.978 40 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 13.559 12.610 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.254 4.254 4 C -0.090 4.090 5 N -0.129 5.129 6 H 0.267 0.733 7 C -0.202 4.202 8 C 0.373 3.627 9 O -0.438 6.438 10 N -0.355 5.355 11 C 0.085 3.915 12 C -0.198 4.198 13 C -0.165 4.165 14 C 0.031 3.969 15 N -0.349 5.349 16 C -0.373 4.373 17 H 0.086 0.914 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.806 3.194 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.009 3.991 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.180 0.820 29 H 0.231 0.769 30 H 0.238 0.762 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.009 0.991 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 1.543 13.088 12.439 18.122 hybrid contribution 0.468 -0.546 -1.367 1.544 sum 2.010 12.542 11.072 16.850 Atomic orbital electron populations 1.20283 0.89737 1.02690 1.01667 1.20278 0.96265 0.91901 1.02108 1.21104 0.92175 0.99026 1.13088 1.22717 1.00494 0.82539 1.03281 1.41996 1.06491 1.08071 1.56311 0.73290 1.20141 0.85467 0.92717 1.21855 1.17360 0.85708 0.83853 0.75736 1.90745 1.17434 1.83791 1.51879 1.45757 1.09417 1.05263 1.75080 1.21169 0.95464 0.80479 0.94359 1.21955 1.00233 1.02165 0.95468 1.23211 0.96726 0.99147 0.97455 1.21756 0.86215 0.99915 0.89005 1.44777 1.05672 1.71303 1.13113 1.19379 0.94449 1.32839 0.90597 0.91353 1.25528 0.95514 1.01954 1.02215 1.70001 1.01208 1.51610 1.36529 0.85093 0.77443 0.77424 0.79459 1.21548 1.21198 1.19872 1.21680 0.92757 0.94773 0.89879 0.92468 0.92342 0.89889 0.81990 0.76878 0.76198 0.92439 0.91099 0.90335 0.88033 0.89604 0.90481 0.99142 0.94134 0.95968 0.97398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 9.83 71.24 0.70 -1.65 16 2 C -0.10 -2.66 6.21 -19.56 -0.12 -2.78 16 3 C -0.23 -4.68 10.76 22.01 0.24 -4.44 16 4 C 0.05 0.74 11.89 83.48 0.99 1.74 16 5 N -0.53 -10.56 5.99 -183.62 -1.10 -11.66 16 6 H 0.43 6.16 8.19 -92.70 -0.76 5.40 16 7 C -0.09 -2.58 7.06 40.35 0.28 -2.29 16 8 C 0.58 20.21 7.01 86.45 0.61 20.81 16 9 O -0.56 -22.90 11.72 -4.32 -0.05 -22.96 16 10 N -0.70 -22.17 5.14 -421.46 -2.17 -24.34 16 11 C 0.17 6.07 0.81 4.79 0.00 6.07 16 12 C -0.14 -4.24 8.45 71.98 0.61 -3.63 16 13 C -0.13 -4.36 6.09 31.98 0.19 -4.17 16 14 C 0.16 7.45 5.87 86.85 0.51 7.96 16 15 N -0.62 -33.44 3.40 -691.98 -2.35 -35.79 16 16 C -0.24 -14.37 10.27 84.03 0.86 -13.51 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 19 N -0.94 -55.74 10.09 21.65 0.22 -55.52 16 20 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 24 C 0.14 6.32 6.13 86.73 0.53 6.86 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.84 6.48 -2.39 -0.02 1.82 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.40 10.24 7.60 -92.70 -0.70 9.54 16 31 H 0.06 1.95 6.37 -2.39 -0.02 1.93 16 32 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 2.70 8.04 -2.39 -0.02 2.68 16 35 H 0.09 2.86 8.05 -2.38 -0.02 2.85 16 36 H 0.08 4.20 5.87 -2.39 -0.01 4.18 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 39 H 0.02 1.06 7.80 -2.39 -0.02 1.04 16 40 H 0.01 0.42 6.47 -2.39 -0.02 0.40 16 Total: -1.00 -75.30 320.89 2.06 -73.24 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.40 Total: 20.28 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.88 Total: 8.02 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.40 Total: -127.30 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.30 2.06 -73.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046281746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.112 kcal (2) G-P(sol) polarization free energy of solvation -75.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds