Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39839 * 126.45781 * 2 1 4 4 C 1.35451 * 107.86841 * 180.26728 * 3 2 1 5 5 N 1.35533 * 108.86753 * 359.74295 * 4 3 2 6 6 H 0.97005 * 125.67690 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64707 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.23698 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00371 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99779 * 0.02562 * 8 7 5 11 11 C 1.46502 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53000 * 110.91392 * 62.45132 * 11 10 8 13 13 C 1.55448 * 111.01096 * 186.50321 * 11 10 8 14 14 C 1.54321 * 102.96961 * 82.52411 * 13 11 10 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46531 * 60.00328 * 20 18 16 22 22 H 1.48502 * 109.47014 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47009 * 300.00047 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 H 1.09003 * 109.46775 * 270.17712 * 1 2 3 26 26 H 1.08999 * 109.47493 * 30.17468 * 1 2 3 27 27 H 1.08998 * 109.47154 * 150.17782 * 1 2 3 28 28 H 1.08005 * 126.06390 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.56816 * 179.72038 * 4 3 2 30 30 H 0.97001 * 120.00073 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47194 * 297.54709 * 12 11 10 32 32 H 1.09001 * 109.47578 * 57.55154 * 12 11 10 33 33 H 1.09003 * 109.46933 * 177.54882 * 12 11 10 34 34 H 1.08998 * 110.70855 * 324.15215 * 13 11 10 35 35 H 1.08998 * 110.85957 * 200.96831 * 13 11 10 36 36 H 1.08998 * 109.88101 * 262.77542 * 14 13 11 37 37 H 1.08997 * 110.01327 * 141.67909 * 14 13 11 38 38 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 40 40 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0060 5 7 3.6284 -0.6624 -0.0040 6 1 4.4191 -1.2243 -0.0070 7 6 2.3263 -1.1088 0.0028 8 6 1.8899 -2.5092 0.0074 9 8 0.7027 -2.7766 0.0129 10 7 2.8037 -3.4998 0.0057 11 6 2.3678 -4.8985 0.0098 12 6 1.5694 -5.2254 -1.2538 13 6 3.5791 -5.8593 0.1711 14 6 3.8144 -5.8669 1.6963 15 7 2.5549 -5.4564 2.3342 16 6 2.3511 -5.3167 3.6811 17 1 1.3845 -5.0091 4.0519 18 6 3.3868 -5.5704 4.5699 19 7 4.5646 -5.9457 4.1180 20 14 3.1089 -5.3792 6.4072 21 1 2.0286 -6.3003 6.8428 22 1 4.3616 -5.7073 7.1341 23 1 2.7155 -3.9786 6.7051 24 6 1.5478 -5.2208 1.2838 25 1 -0.3633 0.0032 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5111 28 1 2.0136 2.1549 0.0004 29 1 4.4972 1.3253 -0.0118 30 1 3.7500 -3.2868 0.0009 31 1 0.6668 -4.6150 -1.2813 32 1 2.1779 -5.0141 -2.1331 33 1 1.2947 -6.2802 -1.2472 34 1 4.4525 -5.4697 -0.3518 35 1 3.3318 -6.8590 -0.1859 36 1 4.6063 -5.1633 1.9527 37 1 4.0878 -6.8690 2.0266 38 1 5.2885 -6.1227 4.7390 39 1 0.9436 -6.1149 1.1300 40 1 0.9127 -4.3759 1.5499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046281747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = 33.038210 kcal Electronic energy + Delta-G solvation = -22294.073329 eV Core-core repulsion = 19110.180383 eV Total energy + Delta-G solvation = -3183.892946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22355 -39.37484 -37.08329 -34.03086 -32.55016 -31.80251 -30.27162 -29.21416 -28.63757 -26.68736 -25.65376 -23.75993 -22.44203 -20.82038 -20.29583 -19.05900 -18.93283 -18.39949 -16.82577 -15.55016 -15.46919 -15.02793 -14.62153 -14.02726 -13.86800 -13.56525 -13.55112 -13.32034 -12.91130 -12.70127 -12.49593 -12.12675 -12.04787 -11.92063 -11.77916 -11.64984 -11.43724 -10.89450 -10.86134 -10.39108 -10.37118 -10.10164 -10.01018 -9.64434 -9.30086 -8.70660 -8.66435 -8.55727 -8.01704 -6.78934 -5.70031 -3.01480 1.66271 2.81870 3.18855 3.42206 3.45884 3.47269 3.47845 3.72167 4.52261 4.96399 5.03711 5.18430 5.29223 5.37741 5.43147 5.49002 5.61483 5.71356 5.83515 5.98877 6.01381 6.04126 6.10905 6.15436 6.24099 6.34368 6.37448 6.48249 6.54798 6.68054 6.77725 6.89741 7.05799 7.14309 7.44268 7.53980 7.55399 7.80171 7.90915 8.27120 8.58089 9.24792 9.84888 10.50837 11.42148 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.005952 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.438913 B = 4703.350300 C = 5446.732886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.082 4.082 3 C -0.214 4.214 4 C 0.018 3.982 5 N -0.539 5.539 6 H 0.416 0.584 7 C -0.049 4.049 8 C 0.591 3.409 9 O -0.526 6.526 10 N -0.703 5.703 11 C 0.158 3.842 12 C -0.148 4.148 13 C -0.146 4.146 14 C 0.178 3.822 15 N -0.602 5.602 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.927 5.927 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.131 3.869 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.389 0.611 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.251 0.749 39 H 0.026 0.974 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 9.726 -12.308 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.239 4.239 4 C -0.118 4.118 5 N -0.135 5.135 6 H 0.253 0.747 7 C -0.162 4.162 8 C 0.379 3.621 9 O -0.403 6.403 10 N -0.352 5.352 11 C 0.071 3.929 12 C -0.207 4.207 13 C -0.185 4.185 14 C 0.053 3.947 15 N -0.328 5.328 16 C -0.348 4.348 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.004 3.996 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.157 0.843 29 H 0.185 0.815 30 H 0.223 0.777 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.749 9.328 -12.089 15.288 hybrid contribution 1.091 0.019 1.142 1.580 sum 0.343 9.347 -10.947 14.399 Atomic orbital electron populations 1.20311 0.89447 1.02520 1.02193 1.19915 0.95844 0.90780 1.02483 1.20750 0.91903 0.98624 1.12587 1.21927 0.99422 0.83059 1.07354 1.41975 1.07351 1.07233 1.56928 0.74691 1.20428 0.83557 0.93975 1.18225 1.16938 0.86030 0.82710 0.76441 1.90748 1.16003 1.83047 1.50527 1.45693 1.08667 1.05959 1.74918 1.21539 0.95911 0.79504 0.95925 1.21985 1.00927 1.01909 0.95860 1.23277 0.95969 0.98262 1.01001 1.21141 0.89036 0.99839 0.84697 1.44421 1.07296 1.79802 1.01318 1.19034 0.96787 1.38667 0.80328 0.90612 1.24753 0.95864 1.02002 0.97990 1.69934 1.01880 1.53031 1.32687 0.86208 0.76729 0.77891 0.85054 1.21151 1.21653 1.21267 1.21897 0.92175 0.98326 0.87227 0.91630 0.92445 0.90121 0.84272 0.81501 0.77746 0.90915 0.93215 0.91785 0.92008 0.90776 0.93890 0.93779 0.93877 0.95664 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.83 36.01 0.35 -0.86 16 2 C -0.08 -1.22 6.21 -104.16 -0.65 -1.86 16 3 C -0.21 -2.62 10.76 -39.98 -0.43 -3.05 16 4 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -6.50 5.99 -9.39 -0.06 -6.55 16 6 H 0.42 3.99 8.19 -40.82 -0.33 3.66 16 7 C -0.05 -0.76 7.06 -81.98 -0.58 -1.34 16 8 C 0.59 10.47 7.18 -12.85 -0.09 10.38 16 9 O -0.53 -10.52 11.60 5.20 0.06 -10.46 16 10 N -0.70 -11.67 5.17 -46.77 -0.24 -11.91 16 11 C 0.16 2.81 0.83 -129.51 -0.11 2.70 16 12 C -0.15 -2.27 8.60 37.16 0.32 -1.95 16 13 C -0.15 -2.58 6.00 -24.74 -0.15 -2.73 16 14 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 15 N -0.60 -15.56 3.39 -170.08 -0.58 -16.14 16 16 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.93 -27.16 10.31 55.49 0.57 -26.59 16 20 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.90 6.10 -2.53 -0.02 2.89 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.24 6.49 -51.93 -0.34 0.90 16 28 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.39 5.61 7.62 -40.82 -0.31 5.30 16 31 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 36 H 0.04 1.10 7.38 -51.93 -0.38 0.72 16 37 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.03 0.56 8.04 -51.93 -0.42 0.15 16 40 H 0.06 1.39 6.31 -51.93 -0.33 1.06 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -33.30 321.87 -7.99 -41.29 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.76 Total: 6.41 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.81 Total: 1.48 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.30 Total: -61.19 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.46 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.30 -7.99 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046281747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.328 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds