Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39839 * 126.45781 * 2 1 4 4 C 1.35451 * 107.86841 * 180.26728 * 3 2 1 5 5 N 1.35533 * 108.86753 * 359.74295 * 4 3 2 6 6 H 0.97005 * 125.67690 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64707 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.23698 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00371 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99779 * 0.02562 * 8 7 5 11 11 C 1.46502 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53000 * 110.91392 * 62.45132 * 11 10 8 13 13 C 1.55448 * 111.01096 * 186.50321 * 11 10 8 14 14 C 1.54321 * 102.96961 * 82.52411 * 13 11 10 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46531 * 60.00328 * 20 18 16 22 22 H 1.48502 * 109.47014 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47009 * 300.00047 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 H 1.09003 * 109.46775 * 270.17712 * 1 2 3 26 26 H 1.08999 * 109.47493 * 30.17468 * 1 2 3 27 27 H 1.08998 * 109.47154 * 150.17782 * 1 2 3 28 28 H 1.08005 * 126.06390 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.56816 * 179.72038 * 4 3 2 30 30 H 0.97001 * 120.00073 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47194 * 297.54709 * 12 11 10 32 32 H 1.09001 * 109.47578 * 57.55154 * 12 11 10 33 33 H 1.09003 * 109.46933 * 177.54882 * 12 11 10 34 34 H 1.08998 * 110.70855 * 324.15215 * 13 11 10 35 35 H 1.08998 * 110.85957 * 200.96831 * 13 11 10 36 36 H 1.08998 * 109.88101 * 262.77542 * 14 13 11 37 37 H 1.08997 * 110.01327 * 141.67909 * 14 13 11 38 38 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 40 40 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0060 5 7 3.6284 -0.6624 -0.0040 6 1 4.4191 -1.2243 -0.0070 7 6 2.3263 -1.1088 0.0028 8 6 1.8899 -2.5092 0.0074 9 8 0.7027 -2.7766 0.0129 10 7 2.8037 -3.4998 0.0057 11 6 2.3678 -4.8985 0.0098 12 6 1.5694 -5.2254 -1.2538 13 6 3.5791 -5.8593 0.1711 14 6 3.8144 -5.8669 1.6963 15 7 2.5549 -5.4564 2.3342 16 6 2.3511 -5.3167 3.6811 17 1 1.3845 -5.0091 4.0519 18 6 3.3868 -5.5704 4.5699 19 7 4.5646 -5.9457 4.1180 20 14 3.1089 -5.3792 6.4072 21 1 2.0286 -6.3003 6.8428 22 1 4.3616 -5.7073 7.1341 23 1 2.7155 -3.9786 6.7051 24 6 1.5478 -5.2208 1.2838 25 1 -0.3633 0.0032 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5111 28 1 2.0136 2.1549 0.0004 29 1 4.4972 1.3253 -0.0118 30 1 3.7500 -3.2868 0.0009 31 1 0.6668 -4.6150 -1.2813 32 1 2.1779 -5.0141 -2.1331 33 1 1.2947 -6.2802 -1.2472 34 1 4.4525 -5.4697 -0.3518 35 1 3.3318 -6.8590 -0.1859 36 1 4.6063 -5.1633 1.9527 37 1 4.0878 -6.8690 2.0266 38 1 5.2885 -6.1227 4.7390 39 1 0.9436 -6.1149 1.1300 40 1 0.9127 -4.3759 1.5499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046281747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = 10.035661 kcal Electronic energy + Delta-G solvation = -22295.070794 eV Core-core repulsion = 19110.180383 eV Total energy + Delta-G solvation = -3184.890412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27135 -40.76845 -38.65973 -35.74770 -33.95143 -33.22471 -31.91180 -30.57122 -30.06337 -27.78628 -27.53178 -25.48771 -23.72814 -22.18846 -21.78947 -20.46218 -20.17326 -19.51008 -18.79835 -17.08966 -16.71950 -16.63377 -16.29171 -15.65774 -15.43020 -14.95545 -14.72711 -14.54115 -14.16891 -13.93805 -13.82433 -13.59490 -13.54186 -13.40206 -13.13992 -13.07818 -12.83944 -12.77561 -12.49420 -12.15877 -12.08370 -11.99321 -11.72776 -11.56484 -10.73468 -10.69756 -10.05989 -9.66693 -9.07954 -8.87603 -7.88661 -5.21900 0.54340 1.40942 1.43613 1.50060 1.87419 2.14007 2.31182 2.45367 2.46564 3.29351 3.53067 3.68860 4.00108 4.02910 4.16444 4.28221 4.29342 4.42571 4.61223 4.67440 4.76751 4.85665 4.89779 4.90918 4.91841 4.99940 5.03535 5.08091 5.19799 5.34599 5.39705 5.47986 5.61469 5.65724 5.74487 5.83427 6.02764 6.17532 6.54489 6.68266 7.09379 7.27372 7.75050 8.39263 9.21009 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.005952 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.438913 B = 4703.350300 C = 5446.732886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.098 4.098 3 C -0.230 4.230 4 C 0.044 3.956 5 N -0.532 5.532 6 H 0.427 0.573 7 C -0.088 4.088 8 C 0.585 3.415 9 O -0.560 6.560 10 N -0.700 5.700 11 C 0.168 3.832 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.185 3.815 15 N -0.620 5.620 16 C -0.243 4.243 17 H 0.066 0.934 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.973 3.027 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.283 1.283 24 C 0.127 3.873 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.163 0.837 29 H 0.213 0.787 30 H 0.401 0.599 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.017 0.983 37 H 0.009 0.991 38 H 0.248 0.752 39 H 0.025 0.975 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 11.107 -13.451 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.254 4.254 4 C -0.093 4.093 5 N -0.129 5.129 6 H 0.266 0.734 7 C -0.201 4.201 8 C 0.375 3.625 9 O -0.440 6.440 10 N -0.350 5.350 11 C 0.081 3.919 12 C -0.197 4.197 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.084 0.916 18 C -0.252 4.252 19 N -0.595 5.595 20 Si 0.801 3.199 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.001 3.999 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.180 0.820 29 H 0.230 0.770 30 H 0.235 0.765 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.534 10.701 -13.257 17.046 hybrid contribution 0.681 -0.337 1.518 1.698 sum 1.215 10.365 -11.739 15.707 Atomic orbital electron populations 1.20273 0.89653 1.02709 1.01611 1.20277 0.96305 0.91858 1.02258 1.21098 0.92142 0.99034 1.13081 1.22700 1.00508 0.82557 1.03527 1.42003 1.06549 1.08066 1.56276 0.73422 1.20201 0.85391 0.92936 1.21569 1.17312 0.85711 0.83798 0.75715 1.90723 1.17348 1.83774 1.52108 1.45631 1.09242 1.05376 1.74757 1.21409 0.95370 0.80323 0.94769 1.21906 1.00162 1.02409 0.95210 1.23151 0.97284 0.99610 0.96537 1.20945 0.87526 0.96862 0.88626 1.44658 1.08888 1.79796 1.01232 1.19281 0.96679 1.38930 0.82287 0.91590 1.25503 0.95717 1.01986 1.01966 1.70128 1.02259 1.53432 1.33633 0.85244 0.76698 0.77833 0.80128 1.20549 1.21279 1.20904 1.21998 0.92005 0.97186 0.88738 0.92582 0.89868 0.92248 0.81973 0.77003 0.76458 0.92585 0.90567 0.90435 0.88454 0.88844 0.96525 0.97249 0.94267 0.95711 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 9.83 71.24 0.70 -1.70 16 2 C -0.10 -2.84 6.21 -19.56 -0.12 -2.96 16 3 C -0.23 -5.03 10.76 22.01 0.24 -4.79 16 4 C 0.04 0.78 11.89 83.48 0.99 1.77 16 5 N -0.53 -11.67 5.99 -183.62 -1.10 -12.77 16 6 H 0.43 7.20 8.19 -92.70 -0.76 6.44 16 7 C -0.09 -2.70 7.06 40.35 0.28 -2.42 16 8 C 0.59 20.96 7.18 86.45 0.62 21.58 16 9 O -0.56 -23.25 11.60 -4.32 -0.05 -23.30 16 10 N -0.70 -22.83 5.17 -420.09 -2.17 -25.00 16 11 C 0.17 5.84 0.83 5.10 0.00 5.85 16 12 C -0.14 -3.99 8.60 71.98 0.62 -3.38 16 13 C -0.13 -4.27 6.00 31.88 0.19 -4.07 16 14 C 0.19 8.85 5.37 86.73 0.47 9.32 16 15 N -0.62 -32.88 3.39 -692.01 -2.35 -35.23 16 16 C -0.24 -14.32 10.28 84.03 0.86 -13.46 16 17 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 19 N -0.95 -56.46 10.31 21.65 0.22 -56.23 16 20 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.13 5.78 6.10 86.85 0.53 6.31 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 28 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 29 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.40 11.03 7.62 -92.71 -0.71 10.32 16 31 H 0.06 1.84 6.53 -2.39 -0.02 1.82 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 34 H 0.10 2.61 8.05 -2.39 -0.02 2.59 16 35 H 0.09 2.82 8.03 -2.39 -0.02 2.80 16 36 H 0.02 0.87 7.38 -2.39 -0.02 0.85 16 37 H 0.01 0.50 7.50 -2.39 -0.02 0.49 16 38 H 0.25 14.39 8.31 -92.70 -0.77 13.61 16 39 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 40 H 0.03 1.56 6.31 -2.39 -0.02 1.54 16 Total: -1.00 -75.52 321.87 2.03 -73.49 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.40 Total: 20.77 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 5.85 Total: 9.12 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.40 Total: -129.24 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -75.52 2.03 -73.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046281747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.523 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds