Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34479 * 126.83743 * 2 1 4 4 N 1.36445 * 108.85937 * 180.25403 * 3 2 1 5 5 H 0.97000 * 124.85572 * 179.72735 * 4 3 2 6 6 C 1.34654 * 110.29591 * 359.74855 * 4 3 2 7 7 C 1.36765 * 108.40068 * 359.97438 * 6 4 3 8 8 C 1.47258 * 126.94587 * 179.97438 * 7 6 4 9 9 O 1.21632 * 120.00125 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00088 * 0.02562 * 8 7 6 11 11 C 1.46504 * 120.00339 * 180.02562 * 10 8 7 12 12 C 1.53006 * 110.63806 * 300.70320 * 11 10 8 13 13 C 1.55147 * 110.87446 * 177.45701 * 11 10 8 14 14 C 1.54907 * 101.58252 * 277.06727 * 13 11 10 15 15 N 1.47425 * 104.83142 * 322.98972 * 14 13 11 16 16 C 1.36939 * 125.65091 * 204.08667 * 15 14 13 17 17 H 1.07996 * 120.00084 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00093 * 0.04951 * 16 15 14 19 19 N 1.31620 * 119.99701 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00051 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47191 * 89.99763 * 20 18 16 22 22 H 1.48501 * 109.46882 * 209.99758 * 20 18 16 23 23 H 1.48498 * 109.47279 * 329.99634 * 20 18 16 24 24 C 1.47020 * 108.70099 * 24.13000 * 15 14 13 25 25 H 1.09003 * 109.47453 * 270.14655 * 1 2 3 26 26 H 1.09004 * 109.47174 * 30.14779 * 1 2 3 27 27 H 1.08997 * 109.47397 * 150.14832 * 1 2 3 28 28 H 1.08001 * 125.57421 * 359.96259 * 3 2 1 29 29 H 1.08007 * 125.80174 * 179.97438 * 6 4 3 30 30 H 0.97004 * 120.00216 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.47002 * 181.68422 * 12 11 10 32 32 H 1.08993 * 109.46955 * 301.68859 * 12 11 10 33 33 H 1.09000 * 109.47050 * 61.68688 * 12 11 10 34 34 H 1.09000 * 111.00569 * 35.14079 * 13 11 10 35 35 H 1.09000 * 111.00893 * 158.99392 * 13 11 10 36 36 H 1.09002 * 110.37245 * 204.15141 * 14 13 11 37 37 H 1.09001 * 110.46333 * 81.87424 * 14 13 11 38 38 H 0.97006 * 120.00067 * 180.02562 * 19 18 16 39 39 H 1.09009 * 109.88145 * 239.52100 * 24 15 14 40 40 H 1.08999 * 110.01397 * 118.43244 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2412 -0.0107 6 6 3.6656 -0.6903 -0.0040 7 6 2.3864 -1.1741 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.7936 -2.8776 0.0138 10 7 2.9072 -3.5612 0.0040 11 6 2.4979 -4.9679 0.0072 12 6 1.6511 -5.2803 1.2427 13 6 3.7337 -5.9034 -0.0621 14 6 4.0226 -5.9248 -1.5838 15 7 2.6931 -5.9106 -2.2207 16 6 2.4047 -6.3741 -3.4766 17 1 1.3943 -6.3184 -3.8539 18 6 3.4109 -6.9159 -4.2645 19 7 4.6423 -6.9838 -3.8046 20 14 3.0173 -7.5487 -5.9773 21 1 3.1808 -6.4485 -6.9612 22 1 3.9416 -8.6597 -6.3190 23 1 1.6168 -8.0411 -6.0135 24 6 1.7283 -5.3156 -1.2844 25 1 -0.3634 0.0026 1.0277 26 1 -0.3634 0.8887 -0.5161 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9869 2.1058 -0.0006 29 1 4.5664 -1.2862 -0.0079 30 1 3.8494 -3.3304 -0.0007 31 1 1.3825 -6.3367 1.2414 32 1 2.2227 -5.0518 2.1421 33 1 0.7448 -4.6750 1.2246 34 1 4.5742 -5.4820 0.4893 35 1 3.4896 -6.9010 0.3032 36 1 4.5633 -6.8316 -1.8547 37 1 4.5925 -5.0427 -1.8759 38 1 5.3456 -7.3621 -4.3553 39 1 0.9367 -6.0315 -1.0630 40 1 1.2996 -4.4108 -1.7154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046835690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = 35.505246 kcal Electronic energy + Delta-G solvation = -22019.867474 eV Core-core repulsion = 18836.081506 eV Total energy + Delta-G solvation = -3183.785968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13977 -39.34519 -36.96658 -33.87843 -32.35495 -31.96798 -30.30842 -29.04072 -28.52213 -26.49233 -25.58205 -23.77158 -22.81000 -20.33663 -20.21251 -19.02357 -18.67999 -18.29287 -16.82809 -15.94608 -15.35674 -14.81644 -14.60508 -13.97925 -13.91887 -13.57351 -13.42552 -13.37948 -12.78044 -12.62706 -12.57832 -12.25110 -12.13663 -11.86173 -11.60762 -11.46704 -11.29012 -10.87408 -10.81088 -10.27852 -10.25847 -10.02914 -9.82336 -9.57695 -9.08955 -8.63319 -8.58416 -8.36639 -8.26436 -6.73343 -5.58985 -2.98486 1.89910 2.44415 3.17667 3.44783 3.49675 3.51916 3.70235 3.94577 4.55913 4.85032 5.02787 5.12390 5.27461 5.45772 5.49075 5.56944 5.67065 5.71361 5.83813 5.86088 5.95024 6.13365 6.18718 6.28377 6.32130 6.37006 6.47741 6.55917 6.64684 6.83293 6.84905 6.91438 6.97608 7.30890 7.40821 7.52338 7.70774 7.88341 8.11269 8.42195 8.83349 9.30121 9.91049 10.56558 11.45490 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.004791 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.924319 B = 5842.594269 C = 6178.496244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.109 4.109 3 C -0.032 4.032 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.044 3.956 7 C -0.219 4.219 8 C 0.589 3.411 9 O -0.541 6.541 10 N -0.709 5.709 11 C 0.162 3.838 12 C -0.149 4.149 13 C -0.146 4.146 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.214 4.214 17 H 0.076 0.924 18 C -0.014 4.014 19 N -0.926 5.926 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.137 3.863 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.166 0.834 29 H 0.171 0.829 30 H 0.392 0.608 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.009 0.991 38 H 0.250 0.750 39 H 0.029 0.971 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 14.266 11.368 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.160 4.160 4 N -0.146 5.146 5 H 0.251 0.749 6 C -0.092 4.092 7 C -0.230 4.230 8 C 0.377 3.623 9 O -0.419 6.419 10 N -0.359 5.359 11 C 0.076 3.924 12 C -0.208 4.208 13 C -0.185 4.185 14 C 0.029 3.971 15 N -0.330 5.330 16 C -0.342 4.342 17 H 0.094 0.906 18 C -0.209 4.209 19 N -0.576 5.576 20 Si 0.744 3.256 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.010 3.990 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.183 0.817 29 H 0.188 0.812 30 H 0.226 0.774 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.305 14.032 11.183 17.945 hybrid contribution 0.875 0.207 -0.998 1.343 sum 0.570 14.239 10.184 17.515 Atomic orbital electron populations 1.20181 0.89419 1.02623 1.01721 1.20563 0.95632 0.90418 1.04991 1.21522 0.82533 0.99065 1.12839 1.41444 1.08173 1.06670 1.58362 0.74875 1.21945 0.98724 0.83764 1.04804 1.20536 0.92551 0.93250 1.16660 1.17301 0.85589 0.83702 0.75709 1.90692 1.17193 1.83542 1.50488 1.45821 1.08950 1.05714 1.75399 1.21276 0.95838 0.79699 0.95570 1.22045 1.00912 1.01824 0.95997 1.23342 0.95374 0.98361 1.01469 1.21915 0.88025 1.02257 0.84952 1.44503 1.04036 1.70820 1.13634 1.19115 0.94529 1.31441 0.89158 0.90569 1.24742 0.95463 1.01951 0.98739 1.69783 1.00007 1.51734 1.36054 0.86077 0.77250 0.78156 0.84107 1.21794 1.21727 1.20701 1.21608 0.92293 0.96280 0.88792 0.92037 0.92662 0.90077 0.81670 0.81202 0.77409 0.92009 0.93330 0.90718 0.92061 0.90617 0.87555 0.97304 0.93923 0.95331 0.94813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.97 36.01 0.36 -0.71 16 2 C -0.11 -1.50 6.35 -102.54 -0.65 -2.15 16 3 C -0.03 -0.33 11.82 -16.83 -0.20 -0.53 16 4 N -0.55 -4.88 5.90 -12.85 -0.08 -4.95 16 5 H 0.42 2.10 8.96 -40.82 -0.37 1.73 16 6 C 0.04 0.49 11.40 -16.85 -0.19 0.30 16 7 C -0.22 -3.29 6.29 -103.35 -0.65 -3.94 16 8 C 0.59 10.53 7.02 -12.60 -0.09 10.44 16 9 O -0.54 -11.16 12.29 5.25 0.06 -11.10 16 10 N -0.71 -11.96 5.14 -47.02 -0.24 -12.20 16 11 C 0.16 3.04 0.81 -129.99 -0.11 2.93 16 12 C -0.15 -2.50 8.36 37.16 0.31 -2.19 16 13 C -0.15 -2.73 6.09 -24.59 -0.15 -2.88 16 14 C 0.15 3.71 5.87 -2.53 -0.01 3.69 16 15 N -0.60 -16.07 3.39 -170.07 -0.58 -16.65 16 16 C -0.21 -6.20 10.27 -15.06 -0.15 -6.36 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 19 N -0.93 -27.21 10.09 55.49 0.56 -26.65 16 20 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.14 3.19 6.16 -3.07 -0.02 3.17 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.27 6.86 -51.93 -0.36 0.91 16 28 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.17 1.44 7.45 -52.48 -0.39 1.05 16 30 H 0.39 5.64 7.43 -40.82 -0.30 5.34 16 31 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.36 6.26 -51.93 -0.33 1.03 16 34 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 36 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.03 0.68 7.82 -51.92 -0.41 0.27 16 40 H 0.03 0.86 6.68 -51.93 -0.35 0.51 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -34.67 321.93 -7.81 -42.48 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.72 Total: 5.31 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.65 Total: 1.28 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.34 Total: -60.45 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.06 Total: -11.10 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.67 -7.81 -42.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.983 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds