Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34479 * 126.83743 * 2 1 4 4 N 1.36445 * 108.85937 * 180.25403 * 3 2 1 5 5 H 0.97000 * 124.85572 * 179.72735 * 4 3 2 6 6 C 1.34654 * 110.29591 * 359.74855 * 4 3 2 7 7 C 1.36765 * 108.40068 * 359.97438 * 6 4 3 8 8 C 1.47258 * 126.94587 * 179.97438 * 7 6 4 9 9 O 1.21632 * 120.00125 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00088 * 0.02562 * 8 7 6 11 11 C 1.46504 * 120.00339 * 180.02562 * 10 8 7 12 12 C 1.53006 * 110.63806 * 300.70320 * 11 10 8 13 13 C 1.55147 * 110.87446 * 177.45701 * 11 10 8 14 14 C 1.54907 * 101.58252 * 277.06727 * 13 11 10 15 15 N 1.47425 * 104.83142 * 322.98972 * 14 13 11 16 16 C 1.36939 * 125.65091 * 204.08667 * 15 14 13 17 17 H 1.07996 * 120.00084 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00093 * 0.04951 * 16 15 14 19 19 N 1.31620 * 119.99701 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00051 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47191 * 89.99763 * 20 18 16 22 22 H 1.48501 * 109.46882 * 209.99758 * 20 18 16 23 23 H 1.48498 * 109.47279 * 329.99634 * 20 18 16 24 24 C 1.47020 * 108.70099 * 24.13000 * 15 14 13 25 25 H 1.09003 * 109.47453 * 270.14655 * 1 2 3 26 26 H 1.09004 * 109.47174 * 30.14779 * 1 2 3 27 27 H 1.08997 * 109.47397 * 150.14832 * 1 2 3 28 28 H 1.08001 * 125.57421 * 359.96259 * 3 2 1 29 29 H 1.08007 * 125.80174 * 179.97438 * 6 4 3 30 30 H 0.97004 * 120.00216 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.47002 * 181.68422 * 12 11 10 32 32 H 1.08993 * 109.46955 * 301.68859 * 12 11 10 33 33 H 1.09000 * 109.47050 * 61.68688 * 12 11 10 34 34 H 1.09000 * 111.00569 * 35.14079 * 13 11 10 35 35 H 1.09000 * 111.00893 * 158.99392 * 13 11 10 36 36 H 1.09002 * 110.37245 * 204.15141 * 14 13 11 37 37 H 1.09001 * 110.46333 * 81.87424 * 14 13 11 38 38 H 0.97006 * 120.00067 * 180.02562 * 19 18 16 39 39 H 1.09009 * 109.88145 * 239.52100 * 24 15 14 40 40 H 1.08999 * 110.01397 * 118.43244 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2412 -0.0107 6 6 3.6656 -0.6903 -0.0040 7 6 2.3864 -1.1741 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.7936 -2.8776 0.0138 10 7 2.9072 -3.5612 0.0040 11 6 2.4979 -4.9679 0.0072 12 6 1.6511 -5.2803 1.2427 13 6 3.7337 -5.9034 -0.0621 14 6 4.0226 -5.9248 -1.5838 15 7 2.6931 -5.9106 -2.2207 16 6 2.4047 -6.3741 -3.4766 17 1 1.3943 -6.3184 -3.8539 18 6 3.4109 -6.9159 -4.2645 19 7 4.6423 -6.9838 -3.8046 20 14 3.0173 -7.5487 -5.9773 21 1 3.1808 -6.4485 -6.9612 22 1 3.9416 -8.6597 -6.3190 23 1 1.6168 -8.0411 -6.0135 24 6 1.7283 -5.3156 -1.2844 25 1 -0.3634 0.0026 1.0277 26 1 -0.3634 0.8887 -0.5161 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9869 2.1058 -0.0006 29 1 4.5664 -1.2862 -0.0079 30 1 3.8494 -3.3304 -0.0007 31 1 1.3825 -6.3367 1.2414 32 1 2.2227 -5.0518 2.1421 33 1 0.7448 -4.6750 1.2246 34 1 4.5742 -5.4820 0.4893 35 1 3.4896 -6.9010 0.3032 36 1 4.5633 -6.8316 -1.8547 37 1 4.5925 -5.0427 -1.8759 38 1 5.3456 -7.3621 -4.3553 39 1 0.9367 -6.0315 -1.0630 40 1 1.2996 -4.4108 -1.7154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046835690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = 10.999703 kcal Electronic energy + Delta-G solvation = -22020.930114 eV Core-core repulsion = 18836.081506 eV Total energy + Delta-G solvation = -3184.848608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06596 -40.78131 -38.59007 -35.66289 -33.69257 -33.28932 -31.97133 -30.49925 -29.97097 -27.52683 -27.40732 -25.48245 -24.11824 -22.21022 -21.37004 -20.17279 -20.08986 -19.18742 -18.81316 -17.21270 -16.98918 -16.65099 -16.00952 -15.58752 -15.18392 -14.99100 -14.72040 -14.45477 -14.17054 -14.01764 -13.95219 -13.55759 -13.53863 -13.30524 -13.21262 -13.04605 -12.82241 -12.75391 -12.26859 -12.07440 -12.01129 -11.92796 -11.66094 -11.48882 -10.74377 -10.52987 -9.96216 -9.47525 -9.13371 -8.87100 -7.78121 -5.21238 0.87095 1.44965 1.46610 1.54587 1.55861 2.30958 2.48567 2.53548 2.70452 3.31040 3.66402 3.73747 4.03928 4.06481 4.16295 4.22077 4.33199 4.51301 4.65753 4.69282 4.74266 4.86146 4.90691 4.92700 4.96561 4.97724 5.04649 5.13004 5.19777 5.37563 5.39289 5.43409 5.64077 5.77488 5.84064 5.88163 6.01000 6.32012 6.73403 6.84268 7.12441 7.52480 7.78179 8.42271 9.23324 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.004791 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.924319 B = 5842.594269 C = 6178.496244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.153 4.153 3 C -0.009 4.009 4 N -0.532 5.532 5 H 0.438 0.562 6 C 0.064 3.936 7 C -0.269 4.269 8 C 0.582 3.418 9 O -0.581 6.581 10 N -0.703 5.703 11 C 0.173 3.827 12 C -0.140 4.140 13 C -0.126 4.126 14 C 0.156 3.844 15 N -0.622 5.622 16 C -0.243 4.243 17 H 0.067 0.933 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.978 3.022 21 H -0.288 1.288 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.137 3.863 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.204 0.796 29 H 0.199 0.801 30 H 0.406 0.594 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.077 0.923 37 H -0.007 1.007 38 H 0.249 0.751 39 H 0.018 0.982 40 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 15.911 12.301 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.159 4.159 3 C -0.137 4.137 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.075 4.075 7 C -0.279 4.279 8 C 0.372 3.628 9 O -0.462 6.462 10 N -0.355 5.355 11 C 0.086 3.914 12 C -0.198 4.198 13 C -0.165 4.165 14 C 0.032 3.968 15 N -0.349 5.349 16 C -0.373 4.373 17 H 0.085 0.915 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.806 3.194 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.011 3.989 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.220 0.780 29 H 0.215 0.785 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.011 0.989 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 1.385 15.717 12.136 19.906 hybrid contribution 0.372 -0.226 -1.326 1.395 sum 1.757 15.491 10.811 18.972 Atomic orbital electron populations 1.20077 0.89967 1.01782 1.01561 1.20814 0.96014 0.91361 1.07678 1.21972 0.82317 0.99748 1.09704 1.41497 1.08786 1.06210 1.56289 0.72183 1.22249 0.98182 0.84852 1.02188 1.20508 0.94836 0.91942 1.20662 1.17848 0.85118 0.85108 0.74706 1.90665 1.18865 1.84345 1.52366 1.45706 1.09670 1.04771 1.75305 1.21089 0.95508 0.80957 0.93883 1.21952 1.00089 1.01860 0.95901 1.23197 0.96562 0.99155 0.97584 1.21754 0.86586 0.99931 0.88558 1.44781 1.05616 1.70868 1.13585 1.19377 0.94539 1.32481 0.90853 0.91483 1.25527 0.95375 1.02033 1.02283 1.70010 1.00494 1.51788 1.37019 0.85090 0.77342 0.77479 0.79484 1.21497 1.21171 1.19977 1.21661 0.92304 0.94411 0.90535 0.91946 0.90311 0.93958 0.77953 0.78461 0.75833 0.91361 0.90530 0.92577 0.87947 0.89882 0.90552 0.98875 0.94139 0.96369 0.97825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 9.97 71.24 0.71 -1.32 16 2 C -0.15 -4.03 6.35 -18.51 -0.12 -4.15 16 3 C -0.01 -0.16 11.82 83.11 0.98 0.82 16 4 N -0.53 -7.35 5.90 -194.56 -1.15 -8.50 16 5 H 0.44 2.34 8.96 -92.71 -0.83 1.51 16 6 C 0.06 1.25 11.40 83.91 0.96 2.20 16 7 C -0.27 -7.90 6.29 -19.04 -0.12 -8.02 16 8 C 0.58 21.20 7.02 86.61 0.61 21.81 16 9 O -0.58 -25.33 12.29 -4.13 -0.05 -25.38 16 10 N -0.70 -23.37 5.14 -420.93 -2.16 -25.53 16 11 C 0.17 6.40 0.81 4.79 0.00 6.41 16 12 C -0.14 -4.54 8.36 71.98 0.60 -3.94 16 13 C -0.13 -4.51 6.09 31.98 0.19 -4.32 16 14 C 0.16 7.62 5.87 86.85 0.51 8.13 16 15 N -0.62 -34.16 3.39 -691.99 -2.35 -36.50 16 16 C -0.24 -14.57 10.27 84.03 0.86 -13.71 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 18 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 19 N -0.94 -56.19 10.09 21.65 0.22 -55.97 16 20 Si 0.98 47.11 29.55 68.60 2.03 49.13 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 24 C 0.14 6.65 6.16 86.73 0.53 7.18 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 28 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.20 2.63 7.45 -2.91 -0.02 2.61 16 30 H 0.41 10.96 7.43 -92.71 -0.69 10.27 16 31 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 2.06 6.26 -2.39 -0.01 2.05 16 34 H 0.10 2.84 8.06 -2.39 -0.02 2.82 16 35 H 0.08 2.89 8.04 -2.39 -0.02 2.87 16 36 H 0.08 4.22 5.87 -2.39 -0.01 4.20 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 39 H 0.02 0.91 7.82 -2.38 -0.02 0.89 16 40 H 0.00 0.20 6.68 -2.39 -0.02 0.19 16 Total: -1.00 -79.74 321.93 2.27 -77.46 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.45 Total: 17.19 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.19 Total: 8.11 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.44 Total: -126.51 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -79.74 2.27 -77.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.462 kcal (2) G-P(sol) polarization free energy of solvation -79.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds