Wall clock time and date at job start Mon Mar 30 2020 02:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34480 * 126.83972 * 2 1 4 4 N 1.36448 * 108.86015 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.84704 * 179.97438 * 4 3 2 6 6 C 1.34652 * 110.29557 * 359.97438 * 4 3 2 7 7 C 1.36765 * 108.40222 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94794 * 180.26313 * 7 6 4 9 9 O 1.21624 * 120.00345 * 179.67918 * 8 7 6 10 10 N 1.34781 * 119.99881 * 359.68405 * 8 7 6 11 11 C 1.46495 * 119.99980 * 180.02562 * 10 8 7 12 12 C 1.52995 * 110.88808 * 62.42322 * 11 10 8 13 13 C 1.55163 * 111.00026 * 186.34667 * 11 10 8 14 14 C 1.54323 * 102.94107 * 82.57211 * 13 11 10 15 15 N 1.47021 * 107.27546 * 22.18773 * 14 13 11 16 16 C 1.36932 * 125.65152 * 181.01871 * 15 14 13 17 17 H 1.07996 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99966 * 0.05139 * 16 15 14 19 19 N 1.31623 * 119.99954 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.46948 * 60.00200 * 20 18 16 22 22 H 1.48506 * 109.46877 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46867 * 299.99495 * 20 18 16 24 24 C 1.47422 * 108.70003 * 1.06488 * 15 14 13 25 25 H 1.08998 * 109.47381 * 269.97826 * 1 2 3 26 26 H 1.09001 * 109.46904 * 29.97423 * 1 2 3 27 27 H 1.08992 * 109.47603 * 149.97310 * 1 2 3 28 28 H 1.08009 * 125.57012 * 0.05520 * 3 2 1 29 29 H 1.08008 * 125.79925 * 180.02562 * 6 4 3 30 30 H 0.97004 * 119.99736 * 359.97438 * 10 8 7 31 31 H 1.08998 * 109.47354 * 60.70552 * 12 11 10 32 32 H 1.09000 * 109.46963 * 180.69784 * 12 11 10 33 33 H 1.08997 * 109.47286 * 300.69772 * 12 11 10 34 34 H 1.08999 * 110.71904 * 200.93065 * 13 11 10 35 35 H 1.08998 * 110.71919 * 324.20312 * 13 11 10 36 36 H 1.08999 * 109.88162 * 262.77064 * 14 13 11 37 37 H 1.09002 * 109.88345 * 141.61337 * 14 13 11 38 38 H 0.97005 * 120.00148 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.36407 * 217.03065 * 24 15 14 40 40 H 1.08997 * 110.46327 * 94.75499 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6551 -0.0006 5 1 4.3840 1.2412 -0.0011 6 6 3.6656 -0.6903 -0.0004 7 6 2.3864 -1.1742 -0.0003 8 6 1.9748 -2.5881 0.0054 9 8 0.7935 -2.8776 0.0107 10 7 2.9072 -3.5614 0.0047 11 6 2.4977 -4.9679 0.0097 12 6 1.7056 -5.3100 -1.2537 13 6 3.7252 -5.9038 0.1681 14 6 3.9626 -5.9074 1.6930 15 7 2.6965 -5.5213 2.3328 16 6 2.4917 -5.3862 3.6800 17 1 1.5200 -5.0973 4.0522 18 6 3.5333 -5.6202 4.5672 19 7 4.7177 -5.9724 4.1136 20 14 3.2542 -5.4353 6.4050 21 1 2.1927 -6.3773 6.8417 22 1 4.5141 -5.7395 7.1301 23 1 2.8343 -4.0427 6.7042 24 6 1.6835 -5.3047 1.2839 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.9869 2.1058 0.0008 29 1 4.5664 -1.2862 -0.0004 30 1 3.8493 -3.3304 0.0002 31 1 2.3299 -5.1405 -2.1310 32 1 1.4025 -6.3565 -1.2203 33 1 0.8202 -4.6769 -1.3100 34 1 3.4935 -6.9074 -0.1884 35 1 4.5902 -5.4973 -0.3560 36 1 4.7413 -5.1888 1.9486 37 1 4.2543 -6.9053 2.0204 38 1 5.4457 -6.1356 4.7336 39 1 1.0339 -4.4709 1.5503 40 1 1.0950 -6.2090 1.1299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046835691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:33 Heat of formation + Delta-G solvation = 9.373072 kcal Electronic energy + Delta-G solvation = -22208.542444 eV Core-core repulsion = 19023.623300 eV Total energy + Delta-G solvation = -3184.919144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04646 -40.73574 -38.54738 -35.60203 -33.68350 -33.28071 -31.96080 -30.51878 -29.93905 -27.49087 -27.40027 -25.48410 -24.12981 -22.14972 -21.35656 -20.12564 -20.09610 -19.18842 -18.76058 -17.11711 -16.99242 -16.59888 -16.03135 -15.59893 -15.31803 -14.92996 -14.72369 -14.45397 -14.18145 -13.95576 -13.81398 -13.55840 -13.49102 -13.35253 -13.22979 -12.99976 -12.80837 -12.73022 -12.25712 -12.11239 -12.03292 -11.93553 -11.67190 -11.49444 -10.69741 -10.50176 -9.90892 -9.45952 -9.12801 -8.83751 -7.84883 -5.17870 0.89225 1.42378 1.45531 1.51938 1.55357 2.34417 2.48701 2.54981 2.74450 3.32709 3.62630 3.75137 4.04725 4.10285 4.18525 4.23894 4.33438 4.52398 4.67311 4.70729 4.75826 4.89024 4.92267 4.94199 4.96664 4.98135 5.07638 5.12526 5.20256 5.38591 5.40571 5.43597 5.68401 5.75641 5.85962 5.89484 6.01823 6.21487 6.74245 6.86916 7.13270 7.56024 7.79067 8.43903 9.24874 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.005879 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.655478 B = 4761.700979 C = 5522.138464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.153 4.153 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.437 0.563 6 C 0.061 3.939 7 C -0.268 4.268 8 C 0.583 3.417 9 O -0.582 6.582 10 N -0.699 5.699 11 C 0.169 3.831 12 C -0.138 4.138 13 C -0.128 4.128 14 C 0.186 3.814 15 N -0.619 5.619 16 C -0.242 4.242 17 H 0.065 0.935 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.283 1.283 24 C 0.127 3.873 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.204 0.796 29 H 0.196 0.804 30 H 0.404 0.596 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.018 0.982 37 H 0.008 0.992 38 H 0.248 0.752 39 H 0.028 0.972 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 13.269 -13.434 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.159 4.159 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.077 4.077 7 C -0.278 4.278 8 C 0.373 3.627 9 O -0.464 6.464 10 N -0.350 5.350 11 C 0.082 3.918 12 C -0.197 4.197 13 C -0.166 4.166 14 C 0.062 3.938 15 N -0.345 5.345 16 C -0.371 4.371 17 H 0.083 0.917 18 C -0.252 4.252 19 N -0.594 5.594 20 Si 0.801 3.199 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.209 1.209 24 C 0.001 3.999 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.221 0.779 29 H 0.213 0.787 30 H 0.239 0.761 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.827 13.141 -13.241 18.674 hybrid contribution 0.535 0.003 1.507 1.599 sum 1.362 13.144 -11.734 17.673 Atomic orbital electron populations 1.20072 0.89899 1.02221 1.01108 1.20820 0.96049 0.91339 1.07711 1.21982 0.82305 0.99766 1.09736 1.41485 1.08791 1.06169 1.56400 0.72249 1.22217 0.98204 0.84870 1.02403 1.20547 0.94760 0.92170 1.20328 1.17793 0.85128 0.85055 0.74683 1.90645 1.18807 1.84351 1.52558 1.45581 1.09481 1.04907 1.74992 1.21289 0.95331 0.80822 0.94383 1.21897 1.00226 1.02003 0.95554 1.23100 0.97210 0.99705 0.96576 1.20937 0.87381 0.96893 0.88620 1.44658 1.08054 1.80606 1.01216 1.19274 0.96123 1.39361 0.82336 0.91749 1.25499 0.95628 1.02130 1.01937 1.70138 1.01611 1.54098 1.33600 0.85240 0.76652 0.77820 0.80151 1.20643 1.21208 1.20912 1.21990 0.91991 0.96891 0.89007 0.93194 0.89788 0.93218 0.77913 0.78748 0.76076 0.90485 0.90833 0.92843 0.89116 0.88296 0.96343 0.97378 0.94278 0.95358 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 9.97 71.24 0.71 -1.39 16 2 C -0.15 -4.28 6.35 -18.51 -0.12 -4.40 16 3 C -0.01 -0.18 11.82 83.11 0.98 0.80 16 4 N -0.53 -8.37 5.90 -194.56 -1.15 -9.52 16 5 H 0.44 3.14 8.96 -92.71 -0.83 2.31 16 6 C 0.06 1.34 11.40 83.92 0.96 2.29 16 7 C -0.27 -8.35 6.29 -19.04 -0.12 -8.47 16 8 C 0.58 22.05 7.20 86.61 0.62 22.67 16 9 O -0.58 -25.85 12.09 -4.11 -0.05 -25.90 16 10 N -0.70 -24.04 5.16 -420.01 -2.17 -26.21 16 11 C 0.17 6.17 0.82 5.00 0.00 6.18 16 12 C -0.14 -4.27 8.62 71.98 0.62 -3.65 16 13 C -0.13 -4.44 5.99 31.78 0.19 -4.25 16 14 C 0.19 9.12 5.36 86.73 0.47 9.58 16 15 N -0.62 -33.70 3.39 -692.01 -2.35 -36.05 16 16 C -0.24 -14.53 10.28 84.03 0.86 -13.67 16 17 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 19 N -0.95 -57.05 10.31 21.65 0.22 -56.83 16 20 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 24 C 0.13 6.04 6.11 86.86 0.53 6.57 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.64 6.86 -2.39 -0.02 1.62 16 28 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.20 3.11 7.45 -2.91 -0.02 3.09 16 30 H 0.40 11.70 7.43 -92.71 -0.69 11.01 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 33 H 0.05 1.88 6.45 -2.39 -0.02 1.86 16 34 H 0.09 2.86 8.04 -2.39 -0.02 2.84 16 35 H 0.10 2.76 8.05 -2.39 -0.02 2.74 16 36 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 37 H 0.01 0.44 7.51 -2.39 -0.02 0.42 16 38 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 39 H 0.03 1.49 6.31 -2.39 -0.02 1.48 16 40 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 Total: -1.00 -80.23 322.67 2.25 -77.98 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -0.46 Total: 17.60 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.17 Total: 9.29 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.44 Total: -128.61 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -80.23 2.25 -77.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046835691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.353 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds