Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.34659 * 125.80166 * 2 1 4 4 H 0.97001 * 124.85322 * 359.97039 * 3 2 1 5 5 C 1.36447 * 110.29687 * 179.69439 * 3 2 1 6 6 C 1.34483 * 108.85936 * 0.27372 * 5 3 2 7 7 C 1.36772 * 125.80230 * 180.15551 * 2 1 3 8 8 C 1.47261 * 126.94219 * 0.03269 * 7 2 1 9 9 O 1.21623 * 120.00005 * 0.27692 * 8 7 2 10 10 N 1.34779 * 119.99733 * 180.28345 * 8 7 2 11 11 C 1.47427 * 125.64398 * 180.02562 * 10 8 7 12 12 C 1.54914 * 104.82939 * 204.08442 * 11 10 8 13 13 H 1.09005 * 110.99771 * 81.06687 * 12 11 10 14 14 C 1.53005 * 111.00439 * 204.87497 * 12 11 10 15 15 C 1.55145 * 101.58425 * 322.99099 * 12 11 10 16 16 H 1.09002 * 110.72236 * 276.96103 * 15 12 11 17 17 N 1.46501 * 110.72473 * 153.86455 * 15 12 11 18 18 C 1.36933 * 120.00606 * 155.00390 * 17 15 12 19 19 H 1.08006 * 119.99612 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00264 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99923 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99878 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47369 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46966 * 119.99859 * 22 20 18 25 25 H 1.48506 * 109.47013 * 239.99315 * 22 20 18 26 26 C 1.47017 * 125.65162 * 359.68189 * 10 8 7 27 27 H 1.09008 * 109.47047 * 90.01927 * 1 2 3 28 28 H 1.09001 * 109.47154 * 210.01952 * 1 2 3 29 29 H 1.09000 * 109.47383 * 330.02458 * 1 2 3 30 30 H 1.08007 * 125.57152 * 180.26453 * 5 3 2 31 31 H 1.08004 * 126.83575 * 180.02562 * 6 5 3 32 32 H 1.08998 * 110.36889 * 322.92277 * 11 10 8 33 33 H 1.09000 * 110.37094 * 85.14043 * 11 10 8 34 34 H 1.08992 * 109.46779 * 58.54868 * 14 12 11 35 35 H 1.09002 * 109.46693 * 178.54867 * 14 12 11 36 36 H 1.09005 * 109.46995 * 298.54768 * 14 12 11 37 37 H 0.97008 * 119.99473 * 334.99915 * 17 15 12 38 38 H 0.97002 * 119.99795 * 180.02562 * 21 20 18 39 39 H 1.08992 * 109.88854 * 298.40206 * 26 10 8 40 40 H 1.09004 * 109.87905 * 59.56629 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0922 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6094 0.7274 0.0068 6 6 3.6882 -0.6151 0.0053 7 6 2.3070 -1.1093 -0.0030 8 6 1.8702 -2.5156 -0.0075 9 8 0.6839 -2.7839 -0.0140 10 7 2.7850 -3.5054 -0.0043 11 6 2.4883 -4.9495 -0.0087 12 6 3.7444 -5.6141 0.6081 13 1 3.7210 -5.5587 1.6965 14 6 3.8843 -7.0636 0.1386 15 6 4.8804 -4.7294 0.0305 16 1 5.1487 -5.0540 -0.9749 17 7 6.0521 -4.7507 0.9098 18 6 7.2964 -4.4945 0.3989 19 1 7.4141 -4.2770 -0.6525 20 6 8.4065 -4.5152 1.2319 21 7 8.2630 -4.7806 2.5131 22 14 10.1041 -4.1663 0.5347 23 1 9.9956 -3.8994 -0.9221 24 1 10.6839 -2.9799 1.2140 25 1 10.9823 -5.3429 0.7579 26 6 4.2439 -3.3238 -0.0031 27 1 -0.3633 -0.0003 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5134 30 1 4.4497 1.4060 0.0124 31 1 4.5890 -1.2109 0.0098 32 1 1.6101 -5.1582 0.6021 33 1 2.3328 -5.3018 -1.0284 34 1 3.9485 -7.0885 -0.9491 35 1 4.7879 -7.4983 0.5661 36 1 3.0161 -7.6365 0.4647 37 1 5.9463 -4.9463 1.8540 38 1 9.0388 -4.7947 3.0953 39 1 4.5526 -2.7962 -0.9055 40 1 4.5466 -2.7608 0.8799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054561434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = 24.155941 kcal Electronic energy + Delta-G solvation = -21754.058488 eV Core-core repulsion = 18569.780378 eV Total energy + Delta-G solvation = -3184.278110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15444 -39.26568 -37.23332 -34.00087 -32.59517 -31.46568 -30.96110 -30.46499 -27.54529 -26.70449 -25.72247 -23.97632 -22.29838 -21.03539 -20.51166 -19.79004 -18.21455 -17.46711 -17.10827 -15.93309 -15.69791 -15.04838 -14.73812 -14.30236 -13.85418 -13.62602 -13.52879 -13.18712 -12.91727 -12.89003 -12.66498 -12.54448 -12.44454 -12.19671 -11.81755 -11.53040 -11.33421 -11.08763 -10.95726 -10.56189 -10.53565 -10.19268 -9.92886 -9.74384 -9.48011 -8.95459 -8.71603 -8.27967 -7.94127 -7.05033 -5.82709 -3.12896 1.90567 2.58718 3.14987 3.39891 3.46097 3.48194 3.58897 3.85288 4.54270 4.86768 4.91573 5.08550 5.21802 5.25064 5.32023 5.42533 5.56144 5.61871 5.67147 5.72155 5.88864 5.90774 5.98278 6.00683 6.05021 6.08416 6.24276 6.31684 6.35084 6.49712 6.59649 6.66277 6.76642 6.88696 6.95551 7.07367 7.49298 7.66152 8.03841 8.34833 8.66933 9.46909 10.01887 10.37002 11.39400 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.005261 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.069008 B = 5320.549473 C = 6691.346114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.026 4.026 6 C -0.167 4.167 7 C -0.228 4.228 8 C 0.603 3.397 9 O -0.568 6.568 10 N -0.607 5.607 11 C 0.116 3.884 12 C -0.115 4.115 13 H 0.082 0.918 14 C -0.132 4.132 15 C 0.174 3.826 16 H 0.067 0.933 17 N -0.711 5.711 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.074 3.926 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.061 0.939 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 8.319 -5.322 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.153 4.153 6 C -0.190 4.190 7 C -0.238 4.238 8 C 0.394 3.606 9 O -0.449 6.449 10 N -0.339 5.339 11 C -0.007 4.007 12 C -0.135 4.135 13 H 0.101 0.899 14 C -0.190 4.190 15 C 0.062 3.938 16 H 0.085 0.915 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.052 4.052 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.803 8.379 -5.421 16.233 hybrid contribution 1.109 0.767 0.027 1.349 sum -11.694 9.146 -5.394 15.796 Atomic orbital electron populations 1.20524 0.87244 1.03912 1.03164 1.20262 0.93514 0.85730 1.02693 1.41577 1.06359 1.08106 1.59075 0.75187 1.21797 0.85404 0.96693 1.11392 1.22825 0.96793 0.93711 1.05707 1.20099 0.93371 0.91865 1.18425 1.17014 0.84287 0.83626 0.75647 1.90675 1.16406 1.84408 1.53452 1.48225 1.07506 1.05863 1.72341 1.22210 0.98157 0.79919 1.00427 1.22649 0.94556 0.95489 1.00813 0.89942 1.21592 1.01732 0.94734 1.00895 1.21312 0.86966 0.90297 0.95249 0.91480 1.42365 1.01271 1.83483 1.07972 1.19303 0.84090 1.40433 0.93768 0.90924 1.24743 0.97930 1.02290 0.95543 1.69674 1.29319 1.55395 1.03320 0.86146 0.84677 0.77470 0.78047 1.20472 1.21857 1.21859 1.23533 0.78085 1.02196 1.01411 0.90746 0.88128 0.92177 0.81433 0.82105 0.91088 0.91882 0.92861 0.91503 0.93281 0.77904 0.93457 0.92065 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.87 36.00 0.36 -0.66 16 2 C 0.10 1.28 7.17 -81.89 -0.59 0.70 16 3 N -0.56 -5.88 5.90 -9.11 -0.05 -5.93 16 4 H 0.41 2.77 8.96 -40.82 -0.37 2.41 16 5 C -0.03 -0.31 11.89 -16.83 -0.20 -0.51 16 6 C -0.17 -2.52 9.39 -37.50 -0.35 -2.87 16 7 C -0.23 -3.72 6.23 -103.35 -0.64 -4.36 16 8 C 0.60 11.04 7.84 -12.59 -0.10 10.94 16 9 O -0.57 -11.23 15.08 5.26 0.08 -11.15 16 10 N -0.61 -10.66 3.33 -171.84 -0.57 -11.23 16 11 C 0.12 1.85 6.37 -2.53 -0.02 1.83 16 12 C -0.12 -1.89 3.27 -88.47 -0.29 -2.18 16 13 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 14 C -0.13 -1.92 9.30 37.16 0.35 -1.57 16 15 C 0.17 3.30 3.08 -66.09 -0.20 3.10 16 16 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 17 N -0.71 -16.72 5.15 -51.65 -0.27 -16.99 16 18 C -0.24 -6.40 9.96 -15.06 -0.15 -6.55 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 22 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.07 1.32 4.75 -3.06 -0.01 1.31 16 27 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 28 H 0.10 1.34 6.48 -51.93 -0.34 1.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.16 2.55 4.80 -52.48 -0.25 2.30 16 32 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 33 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.05 0.73 8.11 -51.93 -0.42 0.30 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.39 9.81 7.76 -40.82 -0.32 9.49 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.06 1.07 7.03 -51.93 -0.37 0.70 16 40 H 0.08 1.50 6.70 -51.93 -0.35 1.15 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -31.59 326.66 -7.87 -39.46 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.73 Total: 11.88 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.95 Total: -1.16 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.17 Total: -60.47 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.59 -7.87 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.615 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds