Wall clock time and date at job start Mon Mar 30 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.34659 * 125.80166 * 2 1 4 4 H 0.97001 * 124.85322 * 359.97039 * 3 2 1 5 5 C 1.36447 * 110.29687 * 179.69439 * 3 2 1 6 6 C 1.34483 * 108.85936 * 0.27372 * 5 3 2 7 7 C 1.36772 * 125.80230 * 180.15551 * 2 1 3 8 8 C 1.47261 * 126.94219 * 0.03269 * 7 2 1 9 9 O 1.21623 * 120.00005 * 0.27692 * 8 7 2 10 10 N 1.34779 * 119.99733 * 180.28345 * 8 7 2 11 11 C 1.47427 * 125.64398 * 180.02562 * 10 8 7 12 12 C 1.54914 * 104.82939 * 204.08442 * 11 10 8 13 13 H 1.09005 * 110.99771 * 81.06687 * 12 11 10 14 14 C 1.53005 * 111.00439 * 204.87497 * 12 11 10 15 15 C 1.55145 * 101.58425 * 322.99099 * 12 11 10 16 16 H 1.09002 * 110.72236 * 276.96103 * 15 12 11 17 17 N 1.46501 * 110.72473 * 153.86455 * 15 12 11 18 18 C 1.36933 * 120.00606 * 155.00390 * 17 15 12 19 19 H 1.08006 * 119.99612 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00264 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99923 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99878 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47369 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46966 * 119.99859 * 22 20 18 25 25 H 1.48506 * 109.47013 * 239.99315 * 22 20 18 26 26 C 1.47017 * 125.65162 * 359.68189 * 10 8 7 27 27 H 1.09008 * 109.47047 * 90.01927 * 1 2 3 28 28 H 1.09001 * 109.47154 * 210.01952 * 1 2 3 29 29 H 1.09000 * 109.47383 * 330.02458 * 1 2 3 30 30 H 1.08007 * 125.57152 * 180.26453 * 5 3 2 31 31 H 1.08004 * 126.83575 * 180.02562 * 6 5 3 32 32 H 1.08998 * 110.36889 * 322.92277 * 11 10 8 33 33 H 1.09000 * 110.37094 * 85.14043 * 11 10 8 34 34 H 1.08992 * 109.46779 * 58.54868 * 14 12 11 35 35 H 1.09002 * 109.46693 * 178.54867 * 14 12 11 36 36 H 1.09005 * 109.46995 * 298.54768 * 14 12 11 37 37 H 0.97008 * 119.99473 * 334.99915 * 17 15 12 38 38 H 0.97002 * 119.99795 * 180.02562 * 21 20 18 39 39 H 1.08992 * 109.88854 * 298.40206 * 26 10 8 40 40 H 1.09004 * 109.87905 * 59.56629 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0922 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6094 0.7274 0.0068 6 6 3.6882 -0.6151 0.0053 7 6 2.3070 -1.1093 -0.0030 8 6 1.8702 -2.5156 -0.0075 9 8 0.6839 -2.7839 -0.0140 10 7 2.7850 -3.5054 -0.0043 11 6 2.4883 -4.9495 -0.0087 12 6 3.7444 -5.6141 0.6081 13 1 3.7210 -5.5587 1.6965 14 6 3.8843 -7.0636 0.1386 15 6 4.8804 -4.7294 0.0305 16 1 5.1487 -5.0540 -0.9749 17 7 6.0521 -4.7507 0.9098 18 6 7.2964 -4.4945 0.3989 19 1 7.4141 -4.2770 -0.6525 20 6 8.4065 -4.5152 1.2319 21 7 8.2630 -4.7806 2.5131 22 14 10.1041 -4.1663 0.5347 23 1 9.9956 -3.8994 -0.9221 24 1 10.6839 -2.9799 1.2140 25 1 10.9823 -5.3429 0.7579 26 6 4.2439 -3.3238 -0.0031 27 1 -0.3633 -0.0003 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5134 30 1 4.4497 1.4060 0.0124 31 1 4.5890 -1.2109 0.0098 32 1 1.6101 -5.1582 0.6021 33 1 2.3328 -5.3018 -1.0284 34 1 3.9485 -7.0885 -0.9491 35 1 4.7879 -7.4983 0.5661 36 1 3.0161 -7.6365 0.4647 37 1 5.9463 -4.9463 1.8540 38 1 9.0388 -4.7947 3.0953 39 1 4.5526 -2.7962 -0.9055 40 1 4.5466 -2.7608 0.8799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054561434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:34 Heat of formation + Delta-G solvation = 3.306956 kcal Electronic energy + Delta-G solvation = -21754.962568 eV Core-core repulsion = 18569.780378 eV Total energy + Delta-G solvation = -3185.182190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21255 -40.63734 -38.69598 -35.81193 -34.03121 -32.61398 -32.43715 -31.74253 -29.17296 -27.88854 -26.84534 -25.81896 -23.68644 -22.35002 -21.67499 -21.23935 -19.46914 -19.06523 -18.48098 -17.37221 -17.07233 -16.40924 -16.26993 -15.62065 -15.33279 -15.20065 -14.88406 -14.54401 -14.25843 -14.11941 -13.86101 -13.73895 -13.56232 -13.40453 -13.14952 -12.89669 -12.84627 -12.80778 -12.45261 -12.10571 -12.02737 -11.98972 -11.65606 -11.42109 -10.96722 -10.80018 -9.82676 -9.58983 -9.07175 -9.00724 -7.90787 -5.20423 0.74716 1.51771 1.52756 1.53298 1.62195 2.05411 2.43256 2.54550 2.60798 3.41000 3.53640 3.85394 3.93347 3.94803 4.06241 4.25686 4.31150 4.34298 4.40778 4.49149 4.64616 4.66091 4.72952 4.74089 4.91693 4.92902 4.97575 5.07316 5.15289 5.15797 5.29395 5.35040 5.38595 5.53554 5.58879 5.78919 6.00363 6.29662 6.62203 6.70041 7.28845 7.37374 8.08547 8.33632 9.32550 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.005261 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.069008 B = 5320.549473 C = 6691.346114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.104 3.896 3 N -0.534 5.534 4 H 0.435 0.565 5 C -0.005 4.005 6 C -0.202 4.202 7 C -0.272 4.272 8 C 0.594 3.406 9 O -0.590 6.590 10 N -0.612 5.612 11 C 0.118 3.882 12 C -0.105 4.105 13 H 0.068 0.932 14 C -0.125 4.125 15 C 0.169 3.831 16 H 0.071 0.929 17 N -0.720 5.720 18 C -0.238 4.238 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.297 1.297 26 C 0.093 3.907 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.203 0.797 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.065 0.935 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 9.943 -6.700 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 N -0.132 5.132 4 H 0.275 0.725 5 C -0.133 4.133 6 C -0.225 4.225 7 C -0.282 4.282 8 C 0.387 3.613 9 O -0.474 6.474 10 N -0.344 5.344 11 C -0.004 4.004 12 C -0.125 4.125 13 H 0.087 0.913 14 C -0.183 4.183 15 C 0.058 3.942 16 H 0.089 0.911 17 N -0.359 5.359 18 C -0.369 4.369 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.225 1.225 26 C -0.032 4.032 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.220 0.780 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.532 10.033 -6.846 18.183 hybrid contribution 1.223 0.325 0.431 1.337 sum -12.309 10.358 -6.415 17.319 Atomic orbital electron populations 1.20535 0.85682 1.04381 1.03913 1.20533 0.94536 0.85673 1.00887 1.41550 1.05641 1.08735 1.57246 0.72494 1.22222 0.86649 0.95987 1.08401 1.22756 0.95913 0.95283 1.08551 1.20203 0.94708 0.91646 1.21599 1.17431 0.84054 0.84620 0.75149 1.90646 1.17069 1.84933 1.54721 1.48282 1.07110 1.06543 1.72422 1.22270 0.97702 0.79156 1.01301 1.22547 0.93581 0.96431 0.99915 0.91343 1.21547 1.01915 0.93292 1.01552 1.21484 0.86425 0.91504 0.94738 0.91098 1.42466 1.01977 1.83563 1.07869 1.19671 0.85027 1.38228 0.94004 0.90152 1.25481 1.01378 1.03423 0.95875 1.69826 1.29785 1.57689 1.04593 0.85152 0.80389 0.76592 0.78095 1.18819 1.22313 1.22462 1.23144 0.78498 1.00894 1.00714 0.89752 0.90624 0.88689 0.78015 0.83774 0.90910 0.90268 0.91614 0.93369 0.90859 0.79327 0.94119 0.91635 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.87 71.23 0.70 -1.07 16 2 C 0.10 2.59 7.17 41.78 0.30 2.89 16 3 N -0.53 -9.66 5.90 -182.73 -1.08 -10.74 16 4 H 0.43 4.04 8.96 -92.71 -0.83 3.21 16 5 C 0.00 -0.11 11.89 83.12 0.99 0.88 16 6 C -0.20 -6.01 9.39 23.62 0.22 -5.78 16 7 C -0.27 -8.80 6.23 -19.04 -0.12 -8.92 16 8 C 0.59 21.98 7.84 86.62 0.68 22.66 16 9 O -0.59 -23.52 15.08 -4.10 -0.06 -23.59 16 10 N -0.61 -21.65 3.33 -815.82 -2.71 -24.36 16 11 C 0.12 3.71 6.37 86.86 0.55 4.26 16 12 C -0.10 -3.42 3.27 -9.40 -0.03 -3.45 16 13 H 0.07 2.44 8.01 -2.38 -0.02 2.42 16 14 C -0.13 -3.51 9.30 71.98 0.67 -2.84 16 15 C 0.17 6.44 3.08 46.18 0.14 6.58 16 16 H 0.07 2.66 7.96 -2.39 -0.02 2.65 16 17 N -0.72 -34.48 5.15 -317.32 -1.64 -36.12 16 18 C -0.24 -12.46 9.96 84.03 0.84 -11.62 16 19 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.97 -57.63 13.06 21.65 0.28 -57.34 16 22 Si 0.97 44.52 29.55 68.60 2.03 46.55 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 26 C 0.09 3.41 4.75 86.74 0.41 3.82 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.07 1.97 6.48 -2.39 -0.02 1.95 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.14 4.69 4.80 -2.91 -0.01 4.67 16 32 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 33 H 0.08 2.24 8.04 -2.39 -0.02 2.22 16 34 H 0.06 1.67 8.11 -2.39 -0.02 1.65 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.37 19.64 7.76 -92.70 -0.72 18.92 16 38 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.07 2.31 7.03 -2.39 -0.02 2.30 16 40 H 0.06 2.32 6.70 -2.39 -0.02 2.31 16 Total: -1.00 -69.40 326.66 2.16 -67.24 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.48 Total: 34.30 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.82 Total: 4.06 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -5.14 Total: -128.56 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.40 2.16 -67.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.549 kcal (2) G-P(sol) polarization free energy of solvation -69.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds