Wall clock time and date at job start Mon Mar 30 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34658 * 125.80367 * 2 1 4 4 H 0.97001 * 124.84459 * 359.97438 * 3 2 1 5 5 C 1.36442 * 110.29886 * 179.97438 * 3 2 1 6 6 C 1.34485 * 108.85744 * 359.71074 * 5 3 2 7 7 C 1.36772 * 125.79920 * 179.97438 * 2 1 3 8 8 C 1.47258 * 126.94444 * 0.02562 * 7 2 1 9 9 O 1.21635 * 119.99938 * 33.81597 * 8 7 2 10 10 N 1.34777 * 120.00151 * 213.81296 * 8 7 2 11 11 C 1.47429 * 125.64593 * 355.79043 * 10 8 7 12 12 C 1.54908 * 104.82763 * 155.83278 * 11 10 8 13 13 H 1.09004 * 111.00701 * 278.89339 * 12 11 10 14 14 N 1.46500 * 111.00117 * 155.08700 * 12 11 10 15 15 C 1.36931 * 120.00316 * 86.45462 * 14 12 11 16 16 H 1.08000 * 120.00327 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00075 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00187 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99943 * 0.26766 * 17 15 14 20 20 H 1.48501 * 109.47248 * 269.72878 * 19 17 15 21 21 H 1.48494 * 109.47404 * 29.72795 * 19 17 15 22 22 H 1.48500 * 109.47343 * 149.73141 * 19 17 15 23 23 C 1.55157 * 101.58601 * 37.00939 * 12 11 10 24 24 H 1.08997 * 110.71916 * 82.85848 * 23 12 11 25 25 C 1.53002 * 110.72169 * 206.13293 * 23 12 11 26 26 C 1.47021 * 125.64658 * 175.74389 * 10 8 7 27 27 H 1.09001 * 109.46879 * 270.02810 * 1 2 3 28 28 H 1.08996 * 109.47158 * 30.02668 * 1 2 3 29 29 H 1.08996 * 109.47057 * 150.03268 * 1 2 3 30 30 H 1.08007 * 125.57051 * 179.97438 * 5 3 2 31 31 H 1.08000 * 126.83666 * 180.27190 * 6 5 3 32 32 H 1.09006 * 110.36497 * 36.99784 * 11 10 8 33 33 H 1.08994 * 110.36549 * 274.67113 * 11 10 8 34 34 H 0.97003 * 119.99487 * 266.44788 * 14 12 11 35 35 H 0.96998 * 119.99929 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.46761 * 59.99926 * 25 23 12 37 37 H 1.08991 * 109.46842 * 179.97438 * 25 23 12 38 38 H 1.09002 * 109.46679 * 300.00095 * 25 23 12 39 39 H 1.08993 * 109.88670 * 300.51220 * 26 10 8 40 40 H 1.08994 * 109.88337 * 61.53223 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6096 0.7274 0.0006 6 6 3.6882 -0.6151 0.0074 7 6 2.3071 -1.1093 0.0005 8 6 1.8703 -2.5156 0.0006 9 8 0.8543 -2.8369 -0.5860 10 7 2.5962 -3.4468 0.6506 11 6 3.8867 -3.2139 1.3244 12 6 3.9859 -4.3349 2.3890 13 1 3.4143 -4.0784 3.2810 14 7 5.3835 -4.6155 2.7271 15 6 6.0136 -3.8829 3.6973 16 1 5.4806 -3.0979 4.2129 17 6 7.3380 -4.1486 4.0172 18 7 7.9439 -3.4441 4.9494 19 14 8.2628 -5.5004 3.1192 20 1 8.0948 -6.7834 3.8479 21 1 7.7235 -5.6389 1.7426 22 1 9.7053 -5.1539 3.0532 23 6 3.3433 -5.5327 1.6410 24 1 4.0726 -6.0189 0.9930 25 6 2.7464 -6.5331 2.6329 26 6 2.2319 -4.8626 0.8057 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5133 30 1 4.4499 1.4060 0.0003 31 1 4.5890 -1.2110 0.0136 32 1 3.8934 -2.2346 1.8030 33 1 4.7069 -3.2943 0.6112 34 1 5.8624 -5.3205 2.2637 35 1 8.8692 -3.6300 5.1732 36 1 1.9802 -6.0392 3.2303 37 1 2.3009 -7.3645 2.0867 38 1 3.5326 -6.9081 3.2882 39 1 1.2773 -4.9451 1.3251 40 1 2.1635 -5.3372 -0.1730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054561436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:37 Heat of formation + Delta-G solvation = 23.742534 kcal Electronic energy + Delta-G solvation = -21795.113875 eV Core-core repulsion = 18610.817838 eV Total energy + Delta-G solvation = -3184.296037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17135 -39.36982 -37.34759 -34.12486 -32.60965 -31.55674 -31.14260 -30.69291 -27.84495 -26.83425 -25.76618 -23.81462 -22.22408 -20.93250 -20.58970 -19.98078 -18.29114 -17.61332 -17.45575 -16.02480 -15.93554 -15.05521 -14.62473 -14.35785 -14.03745 -13.68298 -13.39038 -13.21162 -13.11554 -12.98158 -12.74476 -12.62666 -12.51999 -12.39965 -11.88409 -11.74607 -11.50199 -11.34573 -11.08637 -10.72953 -10.60694 -10.34999 -9.92836 -9.66700 -9.58753 -9.01406 -8.70707 -8.30015 -8.03504 -7.35186 -5.82531 -3.19792 1.93984 2.56534 3.09846 3.34270 3.37175 3.42292 3.47568 3.67445 4.54098 4.75891 4.83935 5.04095 5.07869 5.17818 5.20139 5.34065 5.47924 5.50808 5.55901 5.63465 5.77712 5.80815 5.84578 5.89951 5.94395 6.01512 6.17596 6.18589 6.23628 6.37588 6.45469 6.52244 6.67113 6.82496 6.85345 7.03015 7.47655 7.91523 7.94910 8.36294 8.57890 9.13486 9.85644 10.04439 11.35321 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.005362 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.457046 B = 5220.364283 C = 6344.913115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.090 3.910 3 N -0.554 5.554 4 H 0.413 0.587 5 C -0.020 4.020 6 C -0.159 4.159 7 C -0.224 4.224 8 C 0.606 3.394 9 O -0.563 6.563 10 N -0.609 5.609 11 C 0.078 3.922 12 C 0.180 3.820 13 H 0.073 0.927 14 N -0.736 5.736 15 C -0.248 4.248 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.931 5.931 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.276 1.276 22 H -0.291 1.291 23 C -0.117 4.117 24 H 0.081 0.919 25 C -0.135 4.135 26 C 0.119 3.881 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.364 0.636 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 5.314 -9.655 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.027 4.027 3 N -0.150 5.150 4 H 0.249 0.751 5 C -0.148 4.148 6 C -0.183 4.183 7 C -0.234 4.234 8 C 0.396 3.604 9 O -0.444 6.444 10 N -0.341 5.341 11 C -0.048 4.048 12 C 0.069 3.931 13 H 0.090 0.910 14 N -0.377 5.377 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.578 5.578 19 Si 0.712 3.288 20 H -0.210 1.210 21 H -0.202 1.202 22 H -0.217 1.217 23 C -0.137 4.137 24 H 0.100 0.900 25 C -0.193 4.193 26 C -0.004 4.004 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.186 0.814 31 H 0.167 0.833 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.197 0.803 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.650 5.480 -9.787 16.907 hybrid contribution 1.012 -0.382 -0.567 1.222 sum -11.637 5.098 -10.354 16.390 Atomic orbital electron populations 1.20539 0.87454 1.04292 1.03087 1.20163 0.93393 0.85691 1.03469 1.41525 1.06274 1.08129 1.59087 0.75084 1.21735 0.85492 0.96537 1.10991 1.22243 0.95979 0.93559 1.06527 1.20033 0.93542 0.91765 1.18093 1.17053 0.82090 0.83747 0.77474 1.90697 1.26391 1.81923 1.45372 1.48284 1.23093 1.09023 1.53711 1.23463 0.83356 1.02311 0.95651 1.21369 0.86574 0.90687 0.94495 0.90959 1.42639 1.08255 1.41774 1.45064 1.19062 0.94645 1.13026 1.11054 0.89033 1.24656 0.96669 0.98919 0.98433 1.69698 1.12225 1.42273 1.33586 0.86591 0.79722 0.82726 0.79725 1.21002 1.20238 1.21726 1.22520 0.96913 0.96968 0.97304 0.90039 1.21681 1.00991 0.98039 0.98589 1.21916 0.97957 0.81006 0.99535 0.90829 0.91775 0.88210 0.81351 0.83320 0.90201 0.91606 0.80292 0.92978 0.92562 0.93090 0.91528 0.91622 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.20 36.01 0.37 -0.66 16 2 C 0.09 1.17 7.17 -81.88 -0.59 0.59 16 3 N -0.55 -5.73 5.90 -9.10 -0.05 -5.79 16 4 H 0.41 2.71 8.96 -40.82 -0.37 2.35 16 5 C -0.02 -0.24 11.89 -16.83 -0.20 -0.44 16 6 C -0.16 -2.30 9.10 -37.50 -0.34 -2.64 16 7 C -0.22 -3.54 5.77 -103.35 -0.60 -4.14 16 8 C 0.61 10.73 7.66 -12.59 -0.10 10.63 16 9 O -0.56 -10.98 15.71 5.25 0.08 -10.89 16 10 N -0.61 -10.28 3.33 -171.84 -0.57 -10.85 16 11 C 0.08 1.36 5.09 -2.53 -0.01 1.35 16 12 C 0.18 3.32 3.13 -65.78 -0.21 3.11 16 13 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 14 N -0.74 -16.29 5.08 -51.35 -0.26 -16.55 16 15 C -0.25 -6.62 10.47 -15.06 -0.16 -6.78 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.25 13.97 55.49 0.78 -27.48 16 19 Si 0.88 21.24 27.74 -169.99 -4.71 16.52 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C -0.12 -1.79 3.17 -88.78 -0.28 -2.07 16 24 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 25 C -0.14 -1.83 9.16 37.16 0.34 -1.49 16 26 C 0.12 1.81 6.47 -3.06 -0.02 1.79 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 1.27 6.50 -51.93 -0.34 0.94 16 30 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.15 2.18 6.69 -52.49 -0.35 1.83 16 32 H 0.08 1.46 6.57 -51.93 -0.34 1.12 16 33 H 0.07 1.18 7.75 -51.93 -0.40 0.78 16 34 H 0.36 7.94 5.57 -40.82 -0.23 7.71 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.97 7.76 -51.93 -0.40 0.56 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -32.79 326.30 -7.52 -40.31 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.81 Total: 10.38 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.89 Total: -0.58 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.11 Total: -60.66 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.79 -7.52 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds