Wall clock time and date at job start Mon Mar 30 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34658 * 125.80367 * 2 1 4 4 H 0.97001 * 124.84459 * 359.97438 * 3 2 1 5 5 C 1.36442 * 110.29886 * 179.97438 * 3 2 1 6 6 C 1.34485 * 108.85744 * 359.71074 * 5 3 2 7 7 C 1.36772 * 125.79920 * 179.97438 * 2 1 3 8 8 C 1.47258 * 126.94444 * 0.02562 * 7 2 1 9 9 O 1.21635 * 119.99938 * 33.81597 * 8 7 2 10 10 N 1.34777 * 120.00151 * 213.81296 * 8 7 2 11 11 C 1.47429 * 125.64593 * 355.79043 * 10 8 7 12 12 C 1.54908 * 104.82763 * 155.83278 * 11 10 8 13 13 H 1.09004 * 111.00701 * 278.89339 * 12 11 10 14 14 N 1.46500 * 111.00117 * 155.08700 * 12 11 10 15 15 C 1.36931 * 120.00316 * 86.45462 * 14 12 11 16 16 H 1.08000 * 120.00327 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00075 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00187 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99943 * 0.26766 * 17 15 14 20 20 H 1.48501 * 109.47248 * 269.72878 * 19 17 15 21 21 H 1.48494 * 109.47404 * 29.72795 * 19 17 15 22 22 H 1.48500 * 109.47343 * 149.73141 * 19 17 15 23 23 C 1.55157 * 101.58601 * 37.00939 * 12 11 10 24 24 H 1.08997 * 110.71916 * 82.85848 * 23 12 11 25 25 C 1.53002 * 110.72169 * 206.13293 * 23 12 11 26 26 C 1.47021 * 125.64658 * 175.74389 * 10 8 7 27 27 H 1.09001 * 109.46879 * 270.02810 * 1 2 3 28 28 H 1.08996 * 109.47158 * 30.02668 * 1 2 3 29 29 H 1.08996 * 109.47057 * 150.03268 * 1 2 3 30 30 H 1.08007 * 125.57051 * 179.97438 * 5 3 2 31 31 H 1.08000 * 126.83666 * 180.27190 * 6 5 3 32 32 H 1.09006 * 110.36497 * 36.99784 * 11 10 8 33 33 H 1.08994 * 110.36549 * 274.67113 * 11 10 8 34 34 H 0.97003 * 119.99487 * 266.44788 * 14 12 11 35 35 H 0.96998 * 119.99929 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.46761 * 59.99926 * 25 23 12 37 37 H 1.08991 * 109.46842 * 179.97438 * 25 23 12 38 38 H 1.09002 * 109.46679 * 300.00095 * 25 23 12 39 39 H 1.08993 * 109.88670 * 300.51220 * 26 10 8 40 40 H 1.08994 * 109.88337 * 61.53223 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6096 0.7274 0.0006 6 6 3.6882 -0.6151 0.0074 7 6 2.3071 -1.1093 0.0005 8 6 1.8703 -2.5156 0.0006 9 8 0.8543 -2.8369 -0.5860 10 7 2.5962 -3.4468 0.6506 11 6 3.8867 -3.2139 1.3244 12 6 3.9859 -4.3349 2.3890 13 1 3.4143 -4.0784 3.2810 14 7 5.3835 -4.6155 2.7271 15 6 6.0136 -3.8829 3.6973 16 1 5.4806 -3.0979 4.2129 17 6 7.3380 -4.1486 4.0172 18 7 7.9439 -3.4441 4.9494 19 14 8.2628 -5.5004 3.1192 20 1 8.0948 -6.7834 3.8479 21 1 7.7235 -5.6389 1.7426 22 1 9.7053 -5.1539 3.0532 23 6 3.3433 -5.5327 1.6410 24 1 4.0726 -6.0189 0.9930 25 6 2.7464 -6.5331 2.6329 26 6 2.2319 -4.8626 0.8057 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5133 30 1 4.4499 1.4060 0.0003 31 1 4.5890 -1.2110 0.0136 32 1 3.8934 -2.2346 1.8030 33 1 4.7069 -3.2943 0.6112 34 1 5.8624 -5.3205 2.2637 35 1 8.8692 -3.6300 5.1732 36 1 1.9802 -6.0392 3.2303 37 1 2.3009 -7.3645 2.0867 38 1 3.5326 -6.9081 3.2882 39 1 1.2773 -4.9451 1.3251 40 1 2.1635 -5.3372 -0.1730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054561436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:37 Heat of formation + Delta-G solvation = 1.399125 kcal Electronic energy + Delta-G solvation = -21796.082758 eV Core-core repulsion = 18610.817838 eV Total energy + Delta-G solvation = -3185.264920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19660 -40.69651 -38.77199 -35.92737 -34.03785 -32.95933 -32.49149 -31.81384 -29.44602 -27.94523 -26.82019 -25.61388 -23.58149 -22.31616 -21.69212 -21.39425 -19.54899 -19.45853 -18.52119 -17.42476 -17.28511 -16.32215 -16.28869 -15.67702 -15.37445 -14.97109 -14.83943 -14.63799 -14.46060 -14.25104 -14.09176 -13.71233 -13.60888 -13.45965 -13.36348 -13.05615 -12.92587 -12.88586 -12.51146 -12.23505 -12.06056 -11.91928 -11.78200 -11.37563 -11.04710 -10.88975 -9.79526 -9.65034 -9.29100 -9.07758 -7.98713 -5.33878 0.81987 1.43044 1.45266 1.52261 1.53539 1.97580 2.37192 2.45821 2.51974 3.30867 3.38738 3.69129 3.90245 3.92687 4.02684 4.07472 4.30980 4.32888 4.37961 4.43515 4.59026 4.64175 4.70883 4.72041 4.89390 4.94218 4.96230 5.05900 5.09232 5.12119 5.23493 5.27058 5.40252 5.46610 5.78720 5.80660 6.00385 6.24412 6.56682 6.69896 7.09362 7.24024 7.82960 8.03554 9.22360 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.005362 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.457046 B = 5220.364283 C = 6344.913115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.095 3.905 3 N -0.536 5.536 4 H 0.434 0.566 5 C -0.003 4.003 6 C -0.192 4.192 7 C -0.268 4.268 8 C 0.600 3.400 9 O -0.587 6.587 10 N -0.611 5.611 11 C 0.095 3.905 12 C 0.173 3.827 13 H 0.060 0.940 14 N -0.734 5.734 15 C -0.229 4.229 16 H 0.058 0.942 17 C -0.056 4.056 18 N -0.982 5.982 19 Si 0.950 3.050 20 H -0.278 1.278 21 H -0.250 1.250 22 H -0.299 1.299 23 C -0.104 4.104 24 H 0.089 0.911 25 C -0.132 4.132 26 C 0.118 3.882 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.203 0.797 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.369 0.631 35 H 0.257 0.743 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 5.317 -11.131 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 N -0.133 5.133 4 H 0.275 0.725 5 C -0.131 4.131 6 C -0.216 4.216 7 C -0.278 4.278 8 C 0.392 3.608 9 O -0.470 6.470 10 N -0.343 5.343 11 C -0.031 4.031 12 C 0.063 3.937 13 H 0.078 0.922 14 N -0.377 5.377 15 C -0.360 4.360 16 H 0.076 0.924 17 C -0.248 4.248 18 N -0.632 5.632 19 Si 0.777 3.223 20 H -0.204 1.204 21 H -0.175 1.175 22 H -0.226 1.226 23 C -0.123 4.123 24 H 0.108 0.892 25 C -0.189 4.189 26 C -0.004 4.004 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.220 0.780 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.539 5.492 -11.297 18.468 hybrid contribution 1.165 -0.265 -0.098 1.199 sum -12.374 5.226 -11.395 17.614 Atomic orbital electron populations 1.20558 0.85866 1.04810 1.03811 1.20463 0.94463 0.85661 1.01832 1.41515 1.05631 1.08742 1.57387 0.72529 1.22177 0.86685 0.95955 1.08255 1.22261 0.95240 0.95040 1.09087 1.20153 0.94861 0.91591 1.21186 1.17425 0.81718 0.84655 0.76966 1.90667 1.27390 1.82495 1.46467 1.48317 1.22699 1.09773 1.53499 1.23105 0.83776 1.01154 0.95069 1.21483 0.84722 0.92884 0.94609 0.92218 1.42526 1.09559 1.41386 1.44218 1.18970 0.94457 1.11797 1.10783 0.92355 1.25411 0.97779 1.01844 0.99738 1.69876 1.12488 1.44787 1.36029 0.85491 0.77574 0.79473 0.79726 1.20449 1.17468 1.22636 1.22453 0.96769 0.95912 0.97204 0.89233 1.21665 1.00678 0.98365 0.98219 1.22018 0.98153 0.80177 1.00071 0.89914 0.88402 0.90492 0.78047 0.84553 0.91468 0.91989 0.79684 0.93379 0.92356 0.90364 0.92670 0.90963 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 10.20 71.24 0.73 -1.10 16 2 C 0.09 2.33 7.17 41.78 0.30 2.63 16 3 N -0.54 -9.69 5.90 -182.72 -1.08 -10.77 16 4 H 0.43 4.16 8.96 -92.71 -0.83 3.33 16 5 C 0.00 -0.06 11.89 83.12 0.99 0.93 16 6 C -0.19 -5.54 9.10 23.62 0.21 -5.32 16 7 C -0.27 -8.44 5.77 -19.04 -0.11 -8.55 16 8 C 0.60 21.40 7.66 86.61 0.66 22.06 16 9 O -0.59 -23.00 15.71 -4.14 -0.07 -23.07 16 10 N -0.61 -20.57 3.33 -815.84 -2.71 -23.28 16 11 C 0.09 3.35 5.09 86.85 0.44 3.79 16 12 C 0.17 6.33 3.13 46.38 0.15 6.48 16 13 H 0.06 2.35 8.04 -2.38 -0.02 2.33 16 14 N -0.73 -32.17 5.08 -316.38 -1.61 -33.77 16 15 C -0.23 -12.43 10.47 84.03 0.88 -11.55 16 16 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 17 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 18 N -0.98 -61.14 13.97 21.65 0.30 -60.83 16 19 Si 0.95 43.67 27.74 68.60 1.90 45.58 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.25 -10.29 6.52 99.48 0.65 -9.65 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 C -0.10 -2.99 3.17 -9.60 -0.03 -3.02 16 24 H 0.09 2.48 8.00 -2.39 -0.02 2.46 16 25 C -0.13 -3.29 9.16 71.98 0.66 -2.63 16 26 C 0.12 3.45 6.47 86.73 0.56 4.01 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.92 6.50 -2.39 -0.02 1.90 16 30 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.14 4.13 6.69 -2.91 -0.02 4.11 16 32 H 0.07 2.54 6.57 -2.38 -0.02 2.52 16 33 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 34 H 0.37 15.44 5.57 -92.71 -0.52 14.93 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.06 1.42 8.06 -2.39 -0.02 1.40 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 2.02 7.76 -2.39 -0.02 2.00 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.65 326.30 2.30 -70.35 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.35 Total: 30.76 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 5.91 Total: 5.04 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -5.10 Total: -128.66 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.07 Total: -23.07 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.58 kcal Total: -72.65 2.30 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.751 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds