Wall clock time and date at job start Mon Mar 30 2020 01:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34652 * 125.80234 * 2 1 4 4 H 0.97003 * 124.85153 * 359.97438 * 3 2 1 5 5 C 1.36449 * 110.30045 * 180.14808 * 3 2 1 6 6 C 1.34488 * 108.85247 * 359.61786 * 5 3 2 7 7 C 1.36776 * 125.80159 * 179.72902 * 2 1 3 8 8 C 1.47264 * 126.94017 * 0.02562 * 7 2 1 9 9 O 1.21624 * 120.00406 * 24.29357 * 8 7 2 10 10 N 1.34774 * 119.99569 * 204.29631 * 8 7 2 11 11 C 1.47024 * 125.64765 * 185.51358 * 10 8 7 12 12 C 1.54321 * 107.27439 * 181.02176 * 11 10 8 13 13 H 1.09004 * 110.71689 * 263.83427 * 12 11 10 14 14 C 1.52993 * 110.72134 * 140.55656 * 12 11 10 15 15 C 1.55162 * 102.93919 * 22.19420 * 12 11 10 16 16 H 1.08998 * 111.00347 * 206.42389 * 15 12 11 17 17 N 1.46495 * 111.00396 * 82.61316 * 15 12 11 18 18 C 1.36932 * 120.00158 * 154.99810 * 17 15 12 19 19 H 1.08001 * 120.00218 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00101 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99899 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00100 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46862 * 59.99649 * 22 20 18 24 24 H 1.48498 * 109.47119 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.46778 * 299.99760 * 22 20 18 26 26 C 1.47427 * 125.65149 * 5.20518 * 10 8 7 27 27 H 1.08995 * 109.47094 * 270.26822 * 1 2 3 28 28 H 1.09005 * 109.47168 * 30.27456 * 1 2 3 29 29 H 1.09008 * 109.47013 * 150.26822 * 1 2 3 30 30 H 1.07993 * 125.57485 * 179.87475 * 5 3 2 31 31 H 1.08002 * 126.82980 * 180.24261 * 6 5 3 32 32 H 1.09000 * 109.88402 * 300.44005 * 11 10 8 33 33 H 1.09003 * 109.88213 * 61.60453 * 11 10 8 34 34 H 1.09002 * 109.46965 * 61.45521 * 14 12 11 35 35 H 1.09003 * 109.46954 * 181.45266 * 14 12 11 36 36 H 1.08994 * 109.47422 * 301.45781 * 14 12 11 37 37 H 0.97001 * 119.99671 * 334.99442 * 17 15 12 38 38 H 0.97002 * 119.99583 * 179.97438 * 21 20 18 39 39 H 1.08995 * 110.36824 * 274.74930 * 26 10 8 40 40 H 1.09001 * 110.36429 * 37.07490 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 -0.0004 5 6 3.6095 0.7274 -0.0033 6 6 3.6882 -0.6152 0.0030 7 6 2.3071 -1.1093 0.0052 8 6 1.8702 -2.5156 0.0114 9 8 0.7732 -2.8136 -0.4210 10 7 2.6861 -3.4725 0.4962 11 6 2.4270 -4.9193 0.4587 12 6 3.6180 -5.6162 1.1495 13 1 4.3490 -5.9506 0.4133 14 6 3.1363 -6.7879 2.0073 15 6 4.2102 -4.4915 2.0393 16 1 5.2721 -4.6560 2.2219 17 7 3.4748 -4.3782 3.3013 18 6 4.0890 -3.8538 4.4070 19 1 5.1155 -3.5232 4.3488 20 6 3.3920 -3.7460 5.6026 21 7 2.1405 -4.1475 5.6733 22 14 4.2297 -3.0298 7.1109 23 1 4.6643 -1.6396 6.8224 24 1 3.2776 -3.0250 8.2505 25 1 5.4132 -3.8563 7.4589 26 6 3.9891 -3.2424 1.1463 27 1 -0.3633 0.0048 1.0276 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5097 30 1 4.4497 1.4059 -0.0060 31 1 4.5890 -1.2109 0.0061 32 1 1.5045 -5.1447 0.9937 33 1 2.3498 -5.2554 -0.5754 34 1 2.6447 -7.5250 1.3723 35 1 3.9895 -7.2486 2.5052 36 1 2.4314 -6.4250 2.7553 37 1 2.5527 -4.6748 3.3535 38 1 1.6536 -4.0725 6.5089 39 1 4.7777 -3.1637 0.3981 40 1 3.9539 -2.3409 1.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054561437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:40 Heat of formation + Delta-G solvation = 24.496154 kcal Electronic energy + Delta-G solvation = -22143.524587 eV Core-core repulsion = 18959.261229 eV Total energy + Delta-G solvation = -3184.263358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05575 -39.20480 -37.17399 -33.77051 -32.40011 -31.38489 -30.80197 -30.27998 -27.68306 -26.62547 -25.57641 -23.80625 -22.53455 -20.98698 -20.54787 -19.09995 -18.14539 -17.54434 -17.19513 -15.78323 -15.57872 -14.97480 -14.43487 -14.41474 -13.91800 -13.57646 -13.46596 -13.03981 -12.85785 -12.81559 -12.54565 -12.41094 -12.32717 -11.93038 -11.74064 -11.41743 -11.35499 -11.03927 -10.86996 -10.62351 -10.34452 -10.24533 -9.88969 -9.59270 -9.35632 -8.95851 -8.61458 -8.12606 -7.87103 -6.94997 -5.76929 -3.05910 2.07036 2.63529 3.23363 3.42926 3.47455 3.48646 3.69115 3.96203 4.57773 4.97248 4.98335 5.12758 5.28969 5.31730 5.44258 5.50691 5.63601 5.67495 5.72707 5.78049 5.90203 6.04166 6.06628 6.08186 6.12928 6.30750 6.32109 6.35384 6.46392 6.49738 6.65478 6.76998 6.91889 6.96541 7.04834 7.15437 7.57278 7.68705 8.18686 8.40923 8.81977 9.52459 10.09403 10.44114 11.45186 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.006402 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.907951 B = 4372.365273 C = 5402.804103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.095 3.905 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.025 4.025 6 C -0.161 4.161 7 C -0.219 4.219 8 C 0.605 3.395 9 O -0.565 6.565 10 N -0.597 5.597 11 C 0.118 3.882 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.132 4.132 15 C 0.169 3.831 16 H 0.072 0.928 17 N -0.707 5.707 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.073 3.927 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.052 0.948 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 6.724 -12.578 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.022 4.022 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.152 4.152 6 C -0.185 4.185 7 C -0.229 4.229 8 C 0.396 3.604 9 O -0.447 6.447 10 N -0.329 5.329 11 C -0.004 4.004 12 C -0.136 4.136 13 H 0.096 0.904 14 C -0.189 4.189 15 C 0.057 3.943 16 H 0.090 0.910 17 N -0.347 5.347 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.212 1.212 26 C -0.053 4.053 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.228 6.799 -12.651 14.534 hybrid contribution 0.205 0.919 0.975 1.356 sum 2.433 7.719 -11.676 14.207 Atomic orbital electron populations 1.20576 0.87351 1.04179 1.03370 1.20237 0.93547 0.85667 1.02748 1.41512 1.06248 1.08128 1.59207 0.75178 1.21663 0.85549 0.96441 1.11591 1.22205 0.96059 0.93425 1.06844 1.20064 0.93304 0.91961 1.17568 1.16970 0.82997 0.83620 0.76784 1.90674 1.21084 1.82962 1.49943 1.48055 1.20944 1.05977 1.57913 1.21905 0.98868 0.80135 0.99524 1.22535 0.96699 0.96573 0.97762 0.90437 1.21603 1.01883 0.96143 0.99304 1.21424 0.96147 0.90288 0.86462 0.90996 1.42337 1.13620 1.74022 1.04720 1.19189 0.96117 1.33709 0.88406 0.91113 1.24735 0.96076 1.01851 0.97932 1.69657 1.09131 1.52655 1.26230 0.86294 0.78238 0.78923 0.82859 1.21351 1.21785 1.21240 1.23531 0.83324 1.03237 0.95244 0.90630 0.92026 0.87901 0.81632 0.83571 0.91578 0.92611 0.93867 0.92435 0.90971 0.77760 0.93437 0.93021 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.14 36.01 0.37 -0.92 16 2 C 0.10 1.43 7.17 -81.88 -0.59 0.84 16 3 N -0.56 -6.43 5.90 -9.11 -0.05 -6.48 16 4 H 0.41 3.21 8.96 -40.82 -0.37 2.84 16 5 C -0.03 -0.30 11.89 -16.82 -0.20 -0.50 16 6 C -0.16 -2.38 9.21 -37.50 -0.35 -2.72 16 7 C -0.22 -3.84 5.89 -103.35 -0.61 -4.45 16 8 C 0.61 12.17 7.74 -12.59 -0.10 12.07 16 9 O -0.57 -12.48 15.40 5.26 0.08 -12.40 16 10 N -0.60 -11.32 3.32 -171.71 -0.57 -11.89 16 11 C 0.12 2.09 6.46 -3.06 -0.02 2.08 16 12 C -0.12 -1.88 3.42 -88.79 -0.30 -2.18 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.13 -2.18 8.80 37.15 0.33 -1.85 16 15 C 0.17 3.22 3.47 -65.66 -0.23 2.99 16 16 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 17 N -0.71 -17.04 4.57 -51.24 -0.23 -17.27 16 18 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.07 1.29 4.95 -2.41 -0.01 1.28 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 1.58 6.33 -51.92 -0.33 1.25 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.15 1.99 6.17 -52.49 -0.32 1.66 16 32 H 0.07 1.29 7.82 -51.93 -0.41 0.88 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.42 6.34 -51.93 -0.33 1.09 16 37 H 0.39 10.21 6.32 -40.82 -0.26 9.95 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.05 0.77 7.34 -51.93 -0.38 0.39 16 40 H 0.08 1.67 6.91 -51.93 -0.36 1.31 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -33.17 325.05 -7.81 -40.98 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.68 Total: 12.60 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.96 Total: -0.40 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.13 Total: -62.77 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.17 -7.81 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.481 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds