Wall clock time and date at job start Mon Mar 30 2020 01:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34652 * 125.80234 * 2 1 4 4 H 0.97003 * 124.85153 * 359.97438 * 3 2 1 5 5 C 1.36449 * 110.30045 * 180.14808 * 3 2 1 6 6 C 1.34488 * 108.85247 * 359.61786 * 5 3 2 7 7 C 1.36776 * 125.80159 * 179.72902 * 2 1 3 8 8 C 1.47264 * 126.94017 * 0.02562 * 7 2 1 9 9 O 1.21624 * 120.00406 * 24.29357 * 8 7 2 10 10 N 1.34774 * 119.99569 * 204.29631 * 8 7 2 11 11 C 1.47024 * 125.64765 * 185.51358 * 10 8 7 12 12 C 1.54321 * 107.27439 * 181.02176 * 11 10 8 13 13 H 1.09004 * 110.71689 * 263.83427 * 12 11 10 14 14 C 1.52993 * 110.72134 * 140.55656 * 12 11 10 15 15 C 1.55162 * 102.93919 * 22.19420 * 12 11 10 16 16 H 1.08998 * 111.00347 * 206.42389 * 15 12 11 17 17 N 1.46495 * 111.00396 * 82.61316 * 15 12 11 18 18 C 1.36932 * 120.00158 * 154.99810 * 17 15 12 19 19 H 1.08001 * 120.00218 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00101 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99899 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00100 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46862 * 59.99649 * 22 20 18 24 24 H 1.48498 * 109.47119 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.46778 * 299.99760 * 22 20 18 26 26 C 1.47427 * 125.65149 * 5.20518 * 10 8 7 27 27 H 1.08995 * 109.47094 * 270.26822 * 1 2 3 28 28 H 1.09005 * 109.47168 * 30.27456 * 1 2 3 29 29 H 1.09008 * 109.47013 * 150.26822 * 1 2 3 30 30 H 1.07993 * 125.57485 * 179.87475 * 5 3 2 31 31 H 1.08002 * 126.82980 * 180.24261 * 6 5 3 32 32 H 1.09000 * 109.88402 * 300.44005 * 11 10 8 33 33 H 1.09003 * 109.88213 * 61.60453 * 11 10 8 34 34 H 1.09002 * 109.46965 * 61.45521 * 14 12 11 35 35 H 1.09003 * 109.46954 * 181.45266 * 14 12 11 36 36 H 1.08994 * 109.47422 * 301.45781 * 14 12 11 37 37 H 0.97001 * 119.99671 * 334.99442 * 17 15 12 38 38 H 0.97002 * 119.99583 * 179.97438 * 21 20 18 39 39 H 1.08995 * 110.36824 * 274.74930 * 26 10 8 40 40 H 1.09001 * 110.36429 * 37.07490 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 -0.0004 5 6 3.6095 0.7274 -0.0033 6 6 3.6882 -0.6152 0.0030 7 6 2.3071 -1.1093 0.0052 8 6 1.8702 -2.5156 0.0114 9 8 0.7732 -2.8136 -0.4210 10 7 2.6861 -3.4725 0.4962 11 6 2.4270 -4.9193 0.4587 12 6 3.6180 -5.6162 1.1495 13 1 4.3490 -5.9506 0.4133 14 6 3.1363 -6.7879 2.0073 15 6 4.2102 -4.4915 2.0393 16 1 5.2721 -4.6560 2.2219 17 7 3.4748 -4.3782 3.3013 18 6 4.0890 -3.8538 4.4070 19 1 5.1155 -3.5232 4.3488 20 6 3.3920 -3.7460 5.6026 21 7 2.1405 -4.1475 5.6733 22 14 4.2297 -3.0298 7.1109 23 1 4.6643 -1.6396 6.8224 24 1 3.2776 -3.0250 8.2505 25 1 5.4132 -3.8563 7.4589 26 6 3.9891 -3.2424 1.1463 27 1 -0.3633 0.0048 1.0276 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5097 30 1 4.4497 1.4059 -0.0060 31 1 4.5890 -1.2109 0.0061 32 1 1.5045 -5.1447 0.9937 33 1 2.3498 -5.2554 -0.5754 34 1 2.6447 -7.5250 1.3723 35 1 3.9895 -7.2486 2.5052 36 1 2.4314 -6.4250 2.7553 37 1 2.5527 -4.6748 3.3535 38 1 1.6536 -4.0725 6.5089 39 1 4.7777 -3.1637 0.3981 40 1 3.9539 -2.3409 1.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054561437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:39 Heat of formation + Delta-G solvation = 1.826886 kcal Electronic energy + Delta-G solvation = -22144.507600 eV Core-core repulsion = 18959.261229 eV Total energy + Delta-G solvation = -3185.246371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.15451 -40.63810 -38.71207 -35.61701 -33.94182 -32.45832 -32.35913 -31.69590 -29.32922 -27.89033 -26.79603 -25.75288 -23.96048 -22.34823 -21.61195 -20.58825 -19.59259 -19.18256 -18.46946 -17.30187 -17.03762 -16.51466 -16.08581 -15.69249 -15.48405 -15.08448 -14.77795 -14.56609 -14.20857 -14.06596 -13.77100 -13.68439 -13.46789 -13.41009 -13.20221 -12.92247 -12.84889 -12.73791 -12.47483 -12.23485 -12.17629 -11.89473 -11.45584 -11.34192 -10.97067 -10.80952 -9.76261 -9.55453 -9.05943 -8.88294 -7.89128 -5.16780 0.81971 1.48785 1.51485 1.57146 1.59200 2.08602 2.46726 2.58514 2.60414 3.41931 3.59166 3.93257 3.94838 4.01078 4.10844 4.15466 4.30440 4.37512 4.47901 4.63916 4.67252 4.68481 4.72007 4.81515 4.90628 4.98250 5.01694 5.05682 5.06524 5.26194 5.26623 5.31979 5.53956 5.56471 5.64110 5.83252 6.03632 6.31500 6.68515 6.75005 7.33295 7.38292 8.14776 8.37329 9.34356 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.006402 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.907951 B = 4372.365273 C = 5402.804103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.087 3.913 3 N -0.537 5.537 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.187 4.187 7 C -0.265 4.265 8 C 0.591 3.409 9 O -0.601 6.601 10 N -0.603 5.603 11 C 0.116 3.884 12 C -0.099 4.099 13 H 0.118 0.882 14 C -0.126 4.126 15 C 0.157 3.843 16 H 0.089 0.911 17 N -0.719 5.719 18 C -0.232 4.232 19 H 0.084 0.916 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.969 3.031 23 H -0.279 1.279 24 H -0.304 1.304 25 H -0.275 1.275 26 C 0.086 3.914 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.211 0.789 31 H 0.154 0.846 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.031 0.969 37 H 0.371 0.629 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 8.296 -13.762 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.032 4.032 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.131 4.131 6 C -0.210 4.210 7 C -0.275 4.275 8 C 0.384 3.616 9 O -0.485 6.485 10 N -0.334 5.334 11 C -0.007 4.007 12 C -0.119 4.119 13 H 0.136 0.864 14 C -0.184 4.184 15 C 0.046 3.954 16 H 0.107 0.893 17 N -0.358 5.358 18 C -0.364 4.364 19 H 0.102 0.898 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.230 1.230 25 H -0.201 1.201 26 C -0.039 4.039 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.227 0.773 31 H 0.171 0.829 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.828 8.398 -13.874 16.922 hybrid contribution -0.557 0.452 1.238 1.431 sum 4.271 8.850 -12.636 16.008 Atomic orbital electron populations 1.20527 0.86765 1.04694 1.03156 1.20409 0.94272 0.86223 1.02306 1.41516 1.05958 1.08451 1.57484 0.72712 1.22302 0.86431 0.96112 1.08212 1.22373 0.95045 0.94892 1.08739 1.20205 0.95574 0.91165 1.20521 1.17570 0.82684 0.85021 0.76352 1.90633 1.22488 1.83744 1.51650 1.48197 1.21316 1.06281 1.57611 1.21972 0.98377 0.80088 1.00237 1.22520 0.96534 0.95231 0.97603 0.86351 1.21524 1.01198 0.96802 0.98841 1.21759 0.96525 0.92001 0.85083 0.89320 1.42512 1.13195 1.73911 1.06162 1.19654 0.96427 1.31359 0.88967 0.89803 1.25522 0.96760 1.03662 1.01008 1.69844 1.10863 1.55350 1.26273 0.85267 0.77155 0.78514 0.79164 1.20576 1.23038 1.20065 1.23391 0.83794 1.01207 0.95510 0.91170 0.88210 0.90631 0.77279 0.82893 0.94591 0.90925 0.91345 0.92102 0.94974 0.79599 0.94443 0.89223 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.48 10.14 71.24 0.72 -1.75 16 2 C 0.09 2.53 7.17 41.78 0.30 2.83 16 3 N -0.54 -10.88 5.90 -182.73 -1.08 -11.96 16 4 H 0.43 5.13 8.96 -92.71 -0.83 4.30 16 5 C 0.00 -0.06 11.89 83.12 0.99 0.93 16 6 C -0.19 -5.17 9.21 23.62 0.22 -4.96 16 7 C -0.26 -9.25 5.89 -19.04 -0.11 -9.37 16 8 C 0.59 24.43 7.74 86.62 0.67 25.10 16 9 O -0.60 -27.85 15.40 -4.11 -0.06 -27.91 16 10 N -0.60 -22.96 3.32 -815.40 -2.71 -25.67 16 11 C 0.12 4.10 6.46 86.73 0.56 4.66 16 12 C -0.10 -3.06 3.42 -9.61 -0.03 -3.09 16 13 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 14 C -0.13 -4.09 8.80 71.98 0.63 -3.45 16 15 C 0.16 5.74 3.47 46.46 0.16 5.90 16 16 H 0.09 2.98 8.09 -2.39 -0.02 2.96 16 17 N -0.72 -35.02 4.57 -316.02 -1.44 -36.47 16 18 C -0.23 -12.40 9.96 84.04 0.84 -11.57 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 22 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 C 0.09 2.95 4.95 86.93 0.43 3.38 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.07 2.43 6.33 -2.38 -0.02 2.42 16 30 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.15 3.82 6.17 -2.91 -0.02 3.80 16 32 H 0.04 1.47 7.82 -2.39 -0.02 1.45 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.30 6.34 -2.39 -0.02 1.28 16 37 H 0.37 20.39 6.32 -92.71 -0.59 19.81 16 38 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.09 2.41 7.34 -2.39 -0.02 2.39 16 40 H 0.06 2.39 6.91 -2.39 -0.02 2.37 16 Total: -1.00 -75.86 325.05 2.50 -73.36 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.35 Total: 36.19 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.84 Total: 4.67 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -4.95 Total: -134.17 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.06 Total: -27.91 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.86 2.50 -73.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.187 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds