Wall clock time and date at job start Mon Mar 30 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.34661 * 125.80213 * 2 1 4 4 H 0.97007 * 124.84956 * 0.06792 * 3 2 1 5 5 C 1.36448 * 110.30023 * 180.29521 * 3 2 1 6 6 C 1.34483 * 108.85285 * 359.75318 * 5 3 2 7 7 C 1.36775 * 125.80627 * 179.87231 * 2 1 3 8 8 C 1.47257 * 126.93540 * 359.97438 * 7 2 1 9 9 O 1.21631 * 120.00246 * 359.71538 * 8 7 2 10 10 N 1.34774 * 119.99771 * 179.71147 * 8 7 2 11 11 C 1.47426 * 125.65062 * 179.97438 * 10 8 7 12 12 C 1.54914 * 104.83483 * 204.16830 * 11 10 8 13 13 H 1.08999 * 111.00870 * 81.05880 * 12 11 10 14 14 C 1.52993 * 111.00344 * 204.91606 * 12 11 10 15 15 C 1.55158 * 101.57521 * 322.98382 * 12 11 10 16 16 H 1.09002 * 110.86845 * 153.93437 * 15 12 11 17 17 N 1.46496 * 110.72490 * 277.13744 * 15 12 11 18 18 C 1.36934 * 120.00548 * 199.97697 * 17 15 12 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47027 * 125.65020 * 0.02688 * 10 8 7 27 27 H 1.08998 * 109.47682 * 270.13114 * 1 2 3 28 28 H 1.09009 * 109.47317 * 30.13423 * 1 2 3 29 29 H 1.09006 * 109.47303 * 150.13075 * 1 2 3 30 30 H 1.08001 * 125.57148 * 179.76567 * 5 3 2 31 31 H 1.08004 * 126.83361 * 180.02562 * 6 5 3 32 32 H 1.09008 * 110.36718 * 322.99960 * 11 10 8 33 33 H 1.09000 * 110.37270 * 85.21271 * 11 10 8 34 34 H 1.09000 * 109.47485 * 172.18869 * 14 12 11 35 35 H 1.09006 * 109.47242 * 292.19194 * 14 12 11 36 36 H 1.09005 * 109.47699 * 52.18881 * 14 12 11 37 37 H 0.96999 * 119.99694 * 19.98221 * 17 15 12 38 38 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.87969 * 59.48599 * 26 10 8 40 40 H 1.08996 * 109.87776 * 298.32353 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0009 5 6 3.6095 0.7275 -0.0066 6 6 3.6881 -0.6150 -0.0055 7 6 2.3071 -1.1092 0.0025 8 6 1.8702 -2.5155 0.0061 9 8 0.6839 -2.7838 0.0125 10 7 2.7850 -3.5053 0.0024 11 6 2.4884 -4.9494 0.0059 12 6 3.7502 -5.6120 0.6129 13 1 3.7375 -5.5528 1.7012 14 6 3.8862 -7.0627 0.1463 15 6 4.8807 -4.7292 0.0211 16 1 5.7605 -4.7420 0.6645 17 7 5.2252 -5.1675 -1.3336 18 6 6.4326 -4.8213 -1.8791 19 1 7.1310 -4.2254 -1.3103 20 6 6.7588 -5.2361 -3.1629 21 7 7.9195 -4.9037 -3.6870 22 14 5.5510 -6.2674 -4.1464 23 1 5.8020 -7.7074 -3.8848 24 1 4.1637 -5.9252 -3.7417 25 1 5.7271 -5.9893 -5.5944 26 6 4.2440 -3.3237 -0.0048 27 1 -0.3634 0.0024 1.0276 28 1 -0.3634 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5118 30 1 4.4497 1.4061 -0.0117 31 1 4.5889 -1.2109 -0.0092 32 1 1.6160 -5.1560 0.6260 33 1 2.3229 -5.3053 -1.0110 34 1 4.8472 -7.4607 0.4722 35 1 3.0813 -7.6594 0.5757 36 1 3.8268 -7.1017 -0.9414 37 1 4.5980 -5.7029 -1.8443 38 1 8.1476 -5.1939 -4.5840 39 1 4.5518 -2.7609 0.8765 40 1 4.5473 -2.7960 -0.9089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054561439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:43 Heat of formation + Delta-G solvation = 32.447783 kcal Electronic energy + Delta-G solvation = -22036.592987 eV Core-core repulsion = 18852.674438 eV Total energy + Delta-G solvation = -3183.918549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17895 -39.38414 -37.38494 -33.98405 -32.56624 -31.48193 -31.05156 -30.54328 -28.11792 -26.75993 -25.76796 -23.70735 -22.52277 -21.15824 -20.61087 -19.37595 -18.19132 -17.82151 -17.43708 -15.89997 -15.73047 -15.04635 -14.65065 -14.28304 -14.24301 -13.77353 -13.70347 -13.18660 -12.92973 -12.74360 -12.64355 -12.56538 -12.55232 -12.09199 -11.84720 -11.69920 -11.44508 -11.39041 -10.98887 -10.71034 -10.47489 -10.26571 -9.93758 -9.59543 -9.50743 -8.97611 -8.74143 -8.29686 -7.96248 -7.31968 -5.80848 -3.16820 1.89392 2.55822 3.13197 3.36294 3.39890 3.44719 3.57930 3.84496 4.56593 4.80670 4.86375 5.04520 5.16399 5.19906 5.21094 5.38205 5.39647 5.54842 5.57961 5.64611 5.73999 5.87214 5.90965 5.96705 6.01074 6.10589 6.14485 6.21397 6.26441 6.36777 6.48918 6.65270 6.75358 6.77928 6.85708 7.04464 7.47139 7.94673 8.03179 8.38301 8.66154 9.16125 9.88857 10.07982 11.37090 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.005577 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.905376 B = 5019.507708 C = 5717.071331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.025 4.025 6 C -0.167 4.167 7 C -0.226 4.226 8 C 0.603 3.397 9 O -0.567 6.567 10 N -0.604 5.604 11 C 0.116 3.884 12 C -0.117 4.117 13 H 0.084 0.916 14 C -0.132 4.132 15 C 0.175 3.825 16 H 0.078 0.922 17 N -0.737 5.737 18 C -0.246 4.246 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.931 5.931 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.277 1.277 25 H -0.291 1.291 26 C 0.072 3.928 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 8.815 10.177 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.152 4.152 6 C -0.191 4.191 7 C -0.236 4.236 8 C 0.394 3.606 9 O -0.449 6.449 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.137 4.137 13 H 0.102 0.898 14 C -0.190 4.190 15 C 0.064 3.936 16 H 0.096 0.904 17 N -0.380 5.380 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.578 5.578 22 Si 0.708 3.292 23 H -0.209 1.209 24 H -0.203 1.203 25 H -0.217 1.217 26 C -0.053 4.053 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.198 0.802 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.607 8.932 10.108 17.796 hybrid contribution -0.662 -0.113 -0.971 1.181 sum -12.269 8.819 9.137 17.657 Atomic orbital electron populations 1.20528 0.87241 1.03980 1.03136 1.20264 0.93535 0.85717 1.02638 1.41575 1.06352 1.08123 1.59049 0.75159 1.21786 0.85442 0.96647 1.11348 1.22748 0.96696 0.93664 1.05988 1.20087 0.93378 0.91840 1.18309 1.16993 0.84287 0.83599 0.75681 1.90680 1.16401 1.84389 1.53434 1.48158 1.07325 1.05768 1.72269 1.22211 0.97744 0.80079 1.00671 1.22645 0.95209 0.95827 0.99984 0.89787 1.21560 1.01592 0.94190 1.01658 1.21235 0.94748 0.89713 0.87941 0.90406 1.42809 1.18880 1.63503 1.12808 1.19050 0.92253 1.28287 0.97994 0.88954 1.24627 0.96550 1.00384 0.97066 1.69692 1.21491 1.50180 1.16473 0.86656 0.81387 0.80955 0.80204 1.20905 1.20308 1.21720 1.23443 0.78987 1.01443 1.01443 0.90741 0.92149 0.88120 0.81420 0.82304 0.91130 0.91883 0.91662 0.93260 0.92344 0.80217 0.93021 0.92016 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.88 36.00 0.36 -0.67 16 2 C 0.10 1.28 7.17 -81.89 -0.59 0.70 16 3 N -0.56 -5.76 5.90 -9.11 -0.05 -5.81 16 4 H 0.41 2.70 8.96 -40.82 -0.37 2.33 16 5 C -0.03 -0.29 11.89 -16.83 -0.20 -0.49 16 6 C -0.17 -2.43 9.39 -37.50 -0.35 -2.78 16 7 C -0.23 -3.67 6.23 -103.36 -0.64 -4.32 16 8 C 0.60 11.16 7.84 -12.60 -0.10 11.06 16 9 O -0.57 -11.43 15.07 5.25 0.08 -11.35 16 10 N -0.60 -10.70 3.33 -171.84 -0.57 -11.28 16 11 C 0.12 1.92 6.35 -2.53 -0.02 1.90 16 12 C -0.12 -1.77 3.51 -88.47 -0.31 -2.08 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.13 -1.94 8.85 37.15 0.33 -1.61 16 15 C 0.17 3.14 3.37 -66.10 -0.22 2.92 16 16 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 17 N -0.74 -16.40 4.42 -51.65 -0.23 -16.63 16 18 C -0.25 -6.56 10.46 -15.06 -0.16 -6.71 16 19 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 22 Si 0.88 21.83 27.74 -169.99 -4.71 17.11 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 26 C 0.07 1.24 4.73 -3.06 -0.01 1.23 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.10 1.38 6.47 -51.93 -0.34 1.04 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.16 2.31 4.80 -52.48 -0.25 2.06 16 32 H 0.07 1.12 8.04 -51.92 -0.42 0.70 16 33 H 0.06 1.12 7.99 -51.93 -0.41 0.71 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 37 H 0.36 8.18 3.96 -40.82 -0.16 8.02 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.06 0.94 6.84 -51.93 -0.36 0.58 16 40 H 0.08 1.62 6.91 -51.93 -0.36 1.26 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -33.27 319.92 -7.45 -40.72 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.54 Total: 10.77 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.02 Total: -0.67 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.08 Total: -61.40 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.27 -7.45 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.172 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds