Wall clock time and date at job start Mon Mar 30 2020 01:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.34661 * 125.80213 * 2 1 4 4 H 0.97007 * 124.84956 * 0.06792 * 3 2 1 5 5 C 1.36448 * 110.30023 * 180.29521 * 3 2 1 6 6 C 1.34483 * 108.85285 * 359.75318 * 5 3 2 7 7 C 1.36775 * 125.80627 * 179.87231 * 2 1 3 8 8 C 1.47257 * 126.93540 * 359.97438 * 7 2 1 9 9 O 1.21631 * 120.00246 * 359.71538 * 8 7 2 10 10 N 1.34774 * 119.99771 * 179.71147 * 8 7 2 11 11 C 1.47426 * 125.65062 * 179.97438 * 10 8 7 12 12 C 1.54914 * 104.83483 * 204.16830 * 11 10 8 13 13 H 1.08999 * 111.00870 * 81.05880 * 12 11 10 14 14 C 1.52993 * 111.00344 * 204.91606 * 12 11 10 15 15 C 1.55158 * 101.57521 * 322.98382 * 12 11 10 16 16 H 1.09002 * 110.86845 * 153.93437 * 15 12 11 17 17 N 1.46496 * 110.72490 * 277.13744 * 15 12 11 18 18 C 1.36934 * 120.00548 * 199.97697 * 17 15 12 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47027 * 125.65020 * 0.02688 * 10 8 7 27 27 H 1.08998 * 109.47682 * 270.13114 * 1 2 3 28 28 H 1.09009 * 109.47317 * 30.13423 * 1 2 3 29 29 H 1.09006 * 109.47303 * 150.13075 * 1 2 3 30 30 H 1.08001 * 125.57148 * 179.76567 * 5 3 2 31 31 H 1.08004 * 126.83361 * 180.02562 * 6 5 3 32 32 H 1.09008 * 110.36718 * 322.99960 * 11 10 8 33 33 H 1.09000 * 110.37270 * 85.21271 * 11 10 8 34 34 H 1.09000 * 109.47485 * 172.18869 * 14 12 11 35 35 H 1.09006 * 109.47242 * 292.19194 * 14 12 11 36 36 H 1.09005 * 109.47699 * 52.18881 * 14 12 11 37 37 H 0.96999 * 119.99694 * 19.98221 * 17 15 12 38 38 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.87969 * 59.48599 * 26 10 8 40 40 H 1.08996 * 109.87776 * 298.32353 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0009 5 6 3.6095 0.7275 -0.0066 6 6 3.6881 -0.6150 -0.0055 7 6 2.3071 -1.1092 0.0025 8 6 1.8702 -2.5155 0.0061 9 8 0.6839 -2.7838 0.0125 10 7 2.7850 -3.5053 0.0024 11 6 2.4884 -4.9494 0.0059 12 6 3.7502 -5.6120 0.6129 13 1 3.7375 -5.5528 1.7012 14 6 3.8862 -7.0627 0.1463 15 6 4.8807 -4.7292 0.0211 16 1 5.7605 -4.7420 0.6645 17 7 5.2252 -5.1675 -1.3336 18 6 6.4326 -4.8213 -1.8791 19 1 7.1310 -4.2254 -1.3103 20 6 6.7588 -5.2361 -3.1629 21 7 7.9195 -4.9037 -3.6870 22 14 5.5510 -6.2674 -4.1464 23 1 5.8020 -7.7074 -3.8848 24 1 4.1637 -5.9252 -3.7417 25 1 5.7271 -5.9893 -5.5944 26 6 4.2440 -3.3237 -0.0048 27 1 -0.3634 0.0024 1.0276 28 1 -0.3634 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5118 30 1 4.4497 1.4061 -0.0117 31 1 4.5889 -1.2109 -0.0092 32 1 1.6160 -5.1560 0.6260 33 1 2.3229 -5.3053 -1.0110 34 1 4.8472 -7.4607 0.4722 35 1 3.0813 -7.6594 0.5757 36 1 3.8268 -7.1017 -0.9414 37 1 4.5980 -5.7029 -1.8443 38 1 8.1476 -5.1939 -4.5840 39 1 4.5518 -2.7609 0.8765 40 1 4.5473 -2.7960 -0.9089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054561439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:42 Heat of formation + Delta-G solvation = 9.729645 kcal Electronic energy + Delta-G solvation = -22037.578120 eV Core-core repulsion = 18852.674438 eV Total energy + Delta-G solvation = -3184.903681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21257 -40.73005 -38.82449 -35.76327 -34.07843 -32.76464 -32.43980 -31.75707 -29.68789 -27.91549 -26.86271 -25.51943 -23.95927 -22.42998 -21.65493 -20.85975 -19.76486 -19.39872 -18.46872 -17.32673 -17.09772 -16.39651 -16.16596 -15.91213 -15.62016 -15.13007 -14.95156 -14.56349 -14.22960 -14.14854 -13.96851 -13.74227 -13.54531 -13.41645 -13.28033 -13.04991 -12.95406 -12.86251 -12.46162 -12.34590 -12.02497 -11.90364 -11.59587 -11.37018 -11.04103 -10.82436 -9.82908 -9.60613 -9.29219 -9.04963 -7.99427 -5.31126 0.74746 1.37264 1.38863 1.44589 1.54646 2.06871 2.45227 2.48922 2.55398 3.30855 3.50362 3.60817 3.89047 3.93276 4.04454 4.05907 4.30365 4.34739 4.41020 4.58804 4.62982 4.66433 4.68549 4.73026 4.84735 4.92561 4.98773 5.00443 5.07159 5.21051 5.28315 5.29081 5.40815 5.50526 5.79528 5.83158 6.00775 6.25112 6.63434 6.70709 7.10528 7.29017 7.86916 8.04607 9.21791 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.005577 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.905376 B = 5019.507708 C = 5717.071331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.101 3.899 3 N -0.535 5.535 4 H 0.434 0.566 5 C -0.004 4.004 6 C -0.200 4.200 7 C -0.271 4.271 8 C 0.593 3.407 9 O -0.594 6.594 10 N -0.609 5.609 11 C 0.112 3.888 12 C -0.100 4.100 13 H 0.113 0.887 14 C -0.131 4.131 15 C 0.164 3.836 16 H 0.085 0.915 17 N -0.739 5.739 18 C -0.219 4.219 19 H 0.070 0.930 20 C -0.056 4.056 21 N -0.980 5.980 22 Si 0.937 3.063 23 H -0.274 1.274 24 H -0.265 1.265 25 H -0.301 1.301 26 C 0.088 3.912 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.205 0.795 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.364 0.636 38 H 0.256 0.744 39 H 0.083 0.917 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 9.861 11.590 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 N -0.132 5.132 4 H 0.275 0.725 5 C -0.132 4.132 6 C -0.224 4.224 7 C -0.281 4.281 8 C 0.386 3.614 9 O -0.478 6.478 10 N -0.340 5.340 11 C -0.010 4.010 12 C -0.119 4.119 13 H 0.131 0.869 14 C -0.189 4.189 15 C 0.054 3.946 16 H 0.103 0.897 17 N -0.382 5.382 18 C -0.350 4.350 19 H 0.088 0.912 20 C -0.247 4.247 21 N -0.631 5.631 22 Si 0.766 3.234 23 H -0.200 1.200 24 H -0.191 1.191 25 H -0.228 1.228 26 C -0.038 4.038 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.222 0.778 31 H 0.167 0.833 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.198 0.802 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.065 10.002 11.572 20.115 hybrid contribution -0.242 -0.313 -1.304 1.363 sum -13.306 9.689 10.267 19.400 Atomic orbital electron populations 1.20523 0.85915 1.04215 1.03890 1.20510 0.94478 0.85799 1.01109 1.41559 1.05747 1.08678 1.57241 0.72537 1.22264 0.86590 0.96051 1.08274 1.22755 0.95824 0.95216 1.08567 1.20191 0.94945 0.91442 1.21478 1.17471 0.84057 0.84722 0.75153 1.90647 1.17283 1.84989 1.54843 1.48264 1.07320 1.06211 1.72223 1.22276 0.98866 0.79777 1.00088 1.22616 0.92612 0.95413 1.01294 0.86914 1.21558 1.02767 0.94104 1.00426 1.21508 0.96223 0.90831 0.85999 0.89673 1.42814 1.17409 1.63551 1.14458 1.19059 0.92900 1.25668 0.97325 0.91185 1.25275 0.98215 1.02706 0.98530 1.69845 1.23726 1.52725 1.16801 0.85683 0.79886 0.79794 0.78042 1.19997 1.19066 1.22786 1.23186 0.78884 1.00540 1.01151 0.89666 0.88809 0.90897 0.77800 0.83281 0.90216 0.93537 0.91647 0.90411 0.94404 0.80208 0.93548 0.89851 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.88 71.23 0.70 -1.11 16 2 C 0.10 2.51 7.17 41.78 0.30 2.81 16 3 N -0.53 -9.41 5.90 -182.73 -1.08 -10.48 16 4 H 0.43 3.89 8.96 -92.70 -0.83 3.06 16 5 C 0.00 -0.08 11.89 83.12 0.99 0.90 16 6 C -0.20 -5.63 9.39 23.62 0.22 -5.41 16 7 C -0.27 -8.65 6.23 -19.04 -0.12 -8.77 16 8 C 0.59 22.03 7.84 86.61 0.68 22.71 16 9 O -0.59 -24.17 15.07 -4.13 -0.06 -24.23 16 10 N -0.61 -21.45 3.33 -815.82 -2.71 -24.16 16 11 C 0.11 3.63 6.35 86.86 0.55 4.18 16 12 C -0.10 -2.82 3.51 -9.40 -0.03 -2.86 16 13 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 14 C -0.13 -3.55 8.85 71.98 0.64 -2.91 16 15 C 0.16 5.73 3.37 46.18 0.16 5.89 16 16 H 0.09 2.89 8.12 -2.39 -0.02 2.87 16 17 N -0.74 -32.68 4.42 -317.34 -1.40 -34.08 16 18 C -0.22 -11.78 10.46 84.03 0.88 -10.90 16 19 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 20 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 21 N -0.98 -61.52 13.97 21.65 0.30 -61.22 16 22 Si 0.94 45.70 27.74 68.60 1.90 47.60 16 23 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.27 -12.22 6.52 99.48 0.65 -11.58 16 25 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 26 C 0.09 2.99 4.73 86.73 0.41 3.40 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.97 6.47 -2.38 -0.02 1.95 16 30 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.15 4.35 4.80 -2.91 -0.01 4.34 16 32 H 0.08 2.42 8.04 -2.38 -0.02 2.40 16 33 H 0.05 1.64 7.99 -2.39 -0.02 1.62 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.04 1.18 6.38 -2.38 -0.02 1.16 16 37 H 0.36 16.14 3.96 -92.71 -0.37 15.78 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.08 2.48 6.84 -2.39 -0.02 2.46 16 40 H 0.06 2.23 6.91 -2.39 -0.02 2.21 16 Total: -1.00 -74.19 319.92 2.60 -71.59 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.19 Total: 29.80 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.84 Total: 5.19 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -4.89 Total: -129.95 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -74.19 2.60 -71.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054561439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.317 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds