Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45716 * 2 1 4 4 C 1.35454 * 107.86387 * 179.97438 * 3 2 1 5 5 N 1.35535 * 108.87121 * 0.02562 * 4 3 2 6 6 H 0.97004 * 125.67312 * 179.97438 * 5 4 3 7 7 C 1.37645 * 108.64529 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23357 * 180.26617 * 7 5 4 9 9 O 1.21696 * 120.00268 * 179.68413 * 8 7 5 10 10 N 1.34773 * 119.99675 * 359.68204 * 8 7 5 11 11 C 1.47430 * 125.64542 * 179.97438 * 10 8 7 12 12 C 1.54909 * 104.83259 * 204.09496 * 11 10 8 13 13 H 1.08997 * 111.00674 * 81.06630 * 12 11 10 14 14 C 1.52998 * 111.00369 * 204.91827 * 12 11 10 15 15 C 1.55154 * 101.58164 * 322.99205 * 12 11 10 16 16 H 1.09002 * 110.72428 * 277.13641 * 15 12 11 17 17 N 1.46502 * 110.72346 * 154.04161 * 15 12 11 18 18 C 1.36940 * 120.00129 * 154.99810 * 17 15 12 19 19 H 1.08001 * 119.99910 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99880 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99814 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47493 * 59.99735 * 22 20 18 24 24 H 1.48499 * 109.47458 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47179 * 299.99828 * 22 20 18 26 26 C 1.47017 * 125.65322 * 359.69852 * 10 8 7 27 27 H 1.08997 * 109.47145 * 270.02288 * 1 2 3 28 28 H 1.08998 * 109.47083 * 30.02990 * 1 2 3 29 29 H 1.09005 * 109.46652 * 150.02187 * 1 2 3 30 30 H 1.07993 * 126.06973 * 359.97438 * 3 2 1 31 31 H 1.07997 * 125.56539 * 179.97438 * 4 3 2 32 32 H 1.08999 * 110.36964 * 322.93178 * 11 10 8 33 33 H 1.08999 * 110.36712 * 85.26006 * 11 10 8 34 34 H 1.08998 * 109.47390 * 58.55140 * 14 12 11 35 35 H 1.09008 * 109.47135 * 178.54367 * 14 12 11 36 36 H 1.09000 * 109.47514 * 298.54482 * 14 12 11 37 37 H 0.96999 * 119.99924 * 335.00524 * 17 15 12 38 38 H 0.97002 * 119.99792 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.88051 * 298.38968 * 26 10 8 40 40 H 1.08997 * 109.88639 * 59.55059 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6284 -0.6626 0.0004 6 1 4.4191 -1.2244 0.0003 7 6 2.3263 -1.1089 0.0002 8 6 1.8898 -2.5093 0.0055 9 8 0.7026 -2.7767 0.0106 10 7 2.8037 -3.4999 0.0046 11 6 2.5057 -4.9437 0.0100 12 6 3.7668 -5.6067 0.6182 13 1 3.7538 -5.5461 1.7064 14 6 3.9015 -7.0582 0.1535 15 6 4.8982 -4.7258 0.0256 16 1 5.1546 -5.0534 -0.9819 17 7 6.0796 -4.7474 0.8918 18 6 7.3187 -4.4951 0.3662 19 1 7.4250 -4.2799 -0.6867 20 6 8.4380 -4.5161 1.1869 21 7 8.3083 -4.7780 2.4703 22 14 10.1282 -4.1714 0.4703 23 1 10.1454 -2.8111 -0.1252 24 1 11.1484 -4.2542 1.5461 25 1 10.4347 -5.1754 -0.5802 26 6 4.2627 -3.3198 -0.0076 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 2.0137 2.1548 -0.0004 31 1 4.4973 1.3252 0.0003 32 1 1.6330 -5.1487 0.6301 33 1 2.3422 -5.3011 -1.0067 34 1 3.9558 -7.0878 -0.9347 35 1 4.8087 -7.4917 0.5744 36 1 3.0360 -7.6292 0.4897 37 1 5.9840 -4.9404 1.8376 38 1 9.0904 -4.7923 3.0438 39 1 4.5640 -2.7962 -0.9149 40 1 4.5737 -2.7534 0.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054617649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = 23.274143 kcal Electronic energy + Delta-G solvation = -21820.899664 eV Core-core repulsion = 18636.583316 eV Total energy + Delta-G solvation = -3184.316348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30956 -39.35492 -37.49693 -34.24430 -32.95391 -32.10037 -30.89121 -29.62397 -27.88407 -26.94654 -25.90055 -24.13249 -22.30381 -20.90104 -20.70872 -20.01121 -18.81166 -17.43594 -17.27610 -16.06383 -16.00041 -15.12022 -14.86185 -14.28341 -13.87808 -13.67375 -13.66522 -13.22945 -13.12677 -12.89853 -12.72773 -12.56002 -12.40456 -12.22080 -12.09493 -11.63271 -11.49379 -11.24562 -11.10581 -10.83728 -10.70388 -10.38934 -10.13032 -9.90902 -9.72743 -9.12736 -8.70085 -8.52527 -7.99739 -7.24071 -5.97312 -3.29565 1.61694 2.81811 3.08295 3.30432 3.35779 3.37324 3.38606 3.54137 4.40361 4.65128 4.96755 5.02694 5.11952 5.13704 5.25720 5.41109 5.43383 5.48637 5.58619 5.71865 5.76399 5.81298 5.90896 5.93776 6.00627 6.04593 6.09051 6.18021 6.23974 6.32955 6.43634 6.46525 6.53057 6.72074 6.86177 7.08144 7.49794 7.51005 7.70016 8.19327 8.32963 9.31684 9.84167 10.19312 11.24057 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.005287 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.404291 B = 5294.631004 C = 6643.872173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.083 4.083 3 C -0.216 4.216 4 C 0.022 3.978 5 N -0.538 5.538 6 H 0.424 0.576 7 C -0.053 4.053 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.615 5.615 11 C 0.116 3.884 12 C -0.114 4.114 13 H 0.084 0.916 14 C -0.132 4.132 15 C 0.180 3.820 16 H 0.071 0.929 17 N -0.710 5.710 18 C -0.257 4.257 19 H 0.072 0.928 20 C -0.004 4.004 21 N -0.927 5.927 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.060 3.940 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.169 0.831 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.388 0.612 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 5.685 -5.139 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.241 4.241 4 C -0.115 4.115 5 N -0.139 5.139 6 H 0.268 0.732 7 C -0.166 4.166 8 C 0.391 3.609 9 O -0.419 6.419 10 N -0.348 5.348 11 C -0.007 4.007 12 C -0.134 4.134 13 H 0.102 0.898 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.089 0.911 17 N -0.349 5.349 18 C -0.387 4.387 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.573 5.573 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.067 4.067 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.186 0.814 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.222 0.778 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.616 5.451 -5.206 13.020 hybrid contribution 1.621 0.158 0.023 1.629 sum -8.995 5.610 -5.183 11.800 Atomic orbital electron populations 1.20294 0.89545 1.02533 1.01959 1.19889 0.95690 0.90764 1.02835 1.20736 0.91833 0.98546 1.12960 1.22062 0.99512 0.83464 1.06504 1.42826 1.07954 1.07515 1.55590 0.73223 1.20175 0.83902 0.93342 1.19182 1.16758 0.84900 0.82624 0.76591 1.90764 1.15650 1.83265 1.52197 1.48413 1.07070 1.06600 1.72731 1.22270 0.98401 0.79176 1.00846 1.22660 0.94159 0.95680 1.00943 0.89776 1.21592 1.01969 0.94442 1.00985 1.21219 0.86998 0.89337 0.95751 0.91072 1.42369 1.01030 1.83473 1.08036 1.19198 0.84061 1.41769 0.93692 0.90989 1.24777 0.98071 1.01754 0.95534 1.69650 1.29532 1.54545 1.03588 0.86268 0.83883 0.78145 0.77840 1.21150 1.21553 1.21038 1.23511 0.78794 1.03983 1.00406 0.91807 0.92301 0.90333 0.84243 0.81355 0.90645 0.91487 0.92759 0.91369 0.93060 0.77774 0.93136 0.92416 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.82 36.01 0.35 -0.79 16 2 C -0.08 -1.24 6.21 -104.16 -0.65 -1.88 16 3 C -0.22 -2.75 10.76 -39.98 -0.43 -3.18 16 4 C 0.02 0.27 11.89 -16.91 -0.20 0.06 16 5 N -0.54 -7.65 5.61 -9.39 -0.05 -7.70 16 6 H 0.42 5.88 4.92 -40.82 -0.20 5.68 16 7 C -0.05 -0.85 6.89 -81.98 -0.56 -1.42 16 8 C 0.60 10.54 7.82 -12.85 -0.10 10.44 16 9 O -0.54 -10.44 15.06 5.19 0.08 -10.36 16 10 N -0.61 -10.02 3.33 -172.05 -0.57 -10.59 16 11 C 0.12 1.71 6.37 -2.53 -0.02 1.69 16 12 C -0.11 -1.75 3.27 -88.47 -0.29 -2.03 16 13 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 14 C -0.13 -1.79 9.29 37.16 0.35 -1.45 16 15 C 0.18 3.18 3.07 -66.09 -0.20 2.97 16 16 H 0.07 1.26 7.96 -51.93 -0.41 0.85 16 17 N -0.71 -15.83 5.16 -51.64 -0.27 -16.09 16 18 C -0.26 -6.42 9.96 -15.06 -0.15 -6.57 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 20 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 21 N -0.93 -26.09 13.06 55.49 0.72 -25.37 16 22 Si 0.91 20.85 29.55 -169.99 -5.02 15.82 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.06 0.98 4.87 -3.06 -0.01 0.96 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.16 6.50 -51.93 -0.34 0.82 16 30 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.08 1.11 8.04 -51.93 -0.42 0.70 16 33 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.39 9.39 7.76 -40.82 -0.32 9.08 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 0.89 7.27 -51.93 -0.38 0.51 16 40 H 0.07 1.26 6.94 -51.93 -0.36 0.90 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -29.40 327.20 -7.96 -37.36 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.76 Total: 13.39 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.01 Total: -1.39 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.17 Total: -59.75 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.40 -7.96 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054617649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.629 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds