Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45716 * 2 1 4 4 C 1.35454 * 107.86387 * 179.97438 * 3 2 1 5 5 N 1.35535 * 108.87121 * 0.02562 * 4 3 2 6 6 H 0.97004 * 125.67312 * 179.97438 * 5 4 3 7 7 C 1.37645 * 108.64529 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23357 * 180.26617 * 7 5 4 9 9 O 1.21696 * 120.00268 * 179.68413 * 8 7 5 10 10 N 1.34773 * 119.99675 * 359.68204 * 8 7 5 11 11 C 1.47430 * 125.64542 * 179.97438 * 10 8 7 12 12 C 1.54909 * 104.83259 * 204.09496 * 11 10 8 13 13 H 1.08997 * 111.00674 * 81.06630 * 12 11 10 14 14 C 1.52998 * 111.00369 * 204.91827 * 12 11 10 15 15 C 1.55154 * 101.58164 * 322.99205 * 12 11 10 16 16 H 1.09002 * 110.72428 * 277.13641 * 15 12 11 17 17 N 1.46502 * 110.72346 * 154.04161 * 15 12 11 18 18 C 1.36940 * 120.00129 * 154.99810 * 17 15 12 19 19 H 1.08001 * 119.99910 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99880 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99814 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00086 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47493 * 59.99735 * 22 20 18 24 24 H 1.48499 * 109.47458 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47179 * 299.99828 * 22 20 18 26 26 C 1.47017 * 125.65322 * 359.69852 * 10 8 7 27 27 H 1.08997 * 109.47145 * 270.02288 * 1 2 3 28 28 H 1.08998 * 109.47083 * 30.02990 * 1 2 3 29 29 H 1.09005 * 109.46652 * 150.02187 * 1 2 3 30 30 H 1.07993 * 126.06973 * 359.97438 * 3 2 1 31 31 H 1.07997 * 125.56539 * 179.97438 * 4 3 2 32 32 H 1.08999 * 110.36964 * 322.93178 * 11 10 8 33 33 H 1.08999 * 110.36712 * 85.26006 * 11 10 8 34 34 H 1.08998 * 109.47390 * 58.55140 * 14 12 11 35 35 H 1.09008 * 109.47135 * 178.54367 * 14 12 11 36 36 H 1.09000 * 109.47514 * 298.54482 * 14 12 11 37 37 H 0.96999 * 119.99924 * 335.00524 * 17 15 12 38 38 H 0.97002 * 119.99792 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.88051 * 298.38968 * 26 10 8 40 40 H 1.08997 * 109.88639 * 59.55059 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6284 -0.6626 0.0004 6 1 4.4191 -1.2244 0.0003 7 6 2.3263 -1.1089 0.0002 8 6 1.8898 -2.5093 0.0055 9 8 0.7026 -2.7767 0.0106 10 7 2.8037 -3.4999 0.0046 11 6 2.5057 -4.9437 0.0100 12 6 3.7668 -5.6067 0.6182 13 1 3.7538 -5.5461 1.7064 14 6 3.9015 -7.0582 0.1535 15 6 4.8982 -4.7258 0.0256 16 1 5.1546 -5.0534 -0.9819 17 7 6.0796 -4.7474 0.8918 18 6 7.3187 -4.4951 0.3662 19 1 7.4250 -4.2799 -0.6867 20 6 8.4380 -4.5161 1.1869 21 7 8.3083 -4.7780 2.4703 22 14 10.1282 -4.1714 0.4703 23 1 10.1454 -2.8111 -0.1252 24 1 11.1484 -4.2542 1.5461 25 1 10.4347 -5.1754 -0.5802 26 6 4.2627 -3.3198 -0.0076 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 2.0137 2.1548 -0.0004 31 1 4.4973 1.3252 0.0003 32 1 1.6330 -5.1487 0.6301 33 1 2.3422 -5.3011 -1.0067 34 1 3.9558 -7.0878 -0.9347 35 1 4.8087 -7.4917 0.5744 36 1 3.0360 -7.6292 0.4897 37 1 5.9840 -4.9404 1.8376 38 1 9.0904 -4.7923 3.0438 39 1 4.5640 -2.7962 -0.9149 40 1 4.5737 -2.7534 0.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054617649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = 5.301266 kcal Electronic energy + Delta-G solvation = -21821.679027 eV Core-core repulsion = 18636.583316 eV Total energy + Delta-G solvation = -3185.095710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42267 -40.63581 -38.88329 -35.93932 -34.27173 -33.29179 -32.57284 -30.70202 -29.38518 -28.12140 -27.05697 -25.88986 -23.65023 -22.18454 -21.81435 -21.35412 -19.93000 -19.12573 -18.65375 -17.42463 -17.31091 -16.48607 -16.33427 -15.69061 -15.38732 -15.08685 -14.83323 -14.64675 -14.41600 -14.11648 -13.90593 -13.71650 -13.59024 -13.44218 -13.18153 -13.01633 -12.91571 -12.82628 -12.54294 -12.27913 -12.19984 -12.06639 -11.73757 -11.50313 -11.10642 -10.93222 -9.87965 -9.69531 -9.12597 -9.09414 -7.96515 -5.27459 0.44002 1.50015 1.51262 1.57384 1.80791 1.83770 2.27344 2.30171 2.55135 3.32259 3.37689 3.73217 3.76366 3.80699 4.14508 4.20411 4.23171 4.23972 4.36673 4.40194 4.47568 4.64137 4.74766 4.80443 4.86996 4.90216 4.94893 5.02145 5.07585 5.14482 5.23318 5.28585 5.43732 5.45061 5.52537 5.80581 6.01630 6.22846 6.37913 6.48523 7.01613 7.31444 8.01012 8.25849 9.25811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.005287 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.404291 B = 5294.631004 C = 6643.872173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.091 4.091 3 C -0.222 4.222 4 C 0.033 3.967 5 N -0.543 5.543 6 H 0.423 0.577 7 C -0.092 4.092 8 C 0.595 3.405 9 O -0.567 6.567 10 N -0.616 5.616 11 C 0.118 3.882 12 C -0.104 4.104 13 H 0.070 0.930 14 C -0.126 4.126 15 C 0.175 3.825 16 H 0.076 0.924 17 N -0.719 5.719 18 C -0.246 4.246 19 H 0.082 0.918 20 C -0.065 4.065 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.301 1.301 25 H -0.279 1.279 26 C 0.075 3.925 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.168 0.832 31 H 0.205 0.795 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.070 0.930 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 6.934 -6.547 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.245 4.245 4 C -0.104 4.104 5 N -0.143 5.143 6 H 0.266 0.734 7 C -0.204 4.204 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.349 5.349 11 C -0.004 4.004 12 C -0.124 4.124 13 H 0.089 0.911 14 C -0.184 4.184 15 C 0.064 3.936 16 H 0.094 0.906 17 N -0.357 5.357 18 C -0.377 4.377 19 H 0.100 0.900 20 C -0.258 4.258 21 N -0.615 5.615 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.228 1.228 25 H -0.205 1.205 26 C -0.052 4.052 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.185 0.815 31 H 0.222 0.778 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.208 0.792 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.788 6.700 -6.664 14.341 hybrid contribution 1.577 -0.175 0.426 1.643 sum -9.211 6.525 -6.237 12.897 Atomic orbital electron populations 1.20293 0.88888 1.02778 1.02129 1.20309 0.96533 0.91303 1.01935 1.21103 0.91585 0.99274 1.12555 1.22765 1.00849 0.82826 1.03929 1.42850 1.07230 1.08351 1.55849 0.73367 1.20162 0.85107 0.92974 1.22167 1.17037 0.84671 0.83426 0.76164 1.90737 1.16544 1.83813 1.53677 1.48436 1.06788 1.07113 1.72516 1.22339 0.97933 0.78415 1.01762 1.22561 0.93305 0.96522 1.00057 0.91146 1.21551 1.02023 0.93155 1.01667 1.21395 0.86319 0.90597 0.95295 0.90564 1.42463 1.01752 1.83629 1.07907 1.19592 0.84964 1.39182 0.94001 0.89977 1.25488 1.01353 1.03054 0.95873 1.69803 1.29750 1.57123 1.04853 0.85306 0.79867 0.78340 0.76772 1.20160 1.22752 1.20507 1.23192 0.78858 1.02708 1.00428 0.91623 0.89746 0.92328 0.81487 0.77809 0.90562 0.89807 0.91502 0.93303 0.90818 0.79218 0.94008 0.91212 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 9.82 71.24 0.70 -1.43 16 2 C -0.09 -2.60 6.21 -19.56 -0.12 -2.72 16 3 C -0.22 -5.02 10.76 22.01 0.24 -4.79 16 4 C 0.03 0.73 11.89 83.48 0.99 1.72 16 5 N -0.54 -14.64 5.61 -183.62 -1.03 -15.67 16 6 H 0.42 11.25 4.92 -92.71 -0.46 10.80 16 7 C -0.09 -2.90 6.89 40.35 0.28 -2.63 16 8 C 0.59 20.82 7.82 86.45 0.68 21.50 16 9 O -0.57 -22.07 15.06 -4.34 -0.07 -22.14 16 10 N -0.62 -19.73 3.33 -816.47 -2.72 -22.45 16 11 C 0.12 3.35 6.37 86.85 0.55 3.90 16 12 C -0.10 -3.11 3.27 -9.40 -0.03 -3.14 16 13 H 0.07 2.31 8.01 -2.39 -0.02 2.29 16 14 C -0.13 -3.25 9.29 71.98 0.67 -2.58 16 15 C 0.17 6.05 3.07 46.18 0.14 6.19 16 16 H 0.08 2.59 7.96 -2.39 -0.02 2.57 16 17 N -0.72 -32.09 5.16 -317.31 -1.64 -33.72 16 18 C -0.25 -12.16 9.96 84.03 0.84 -11.33 16 19 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 21 N -0.97 -55.35 13.06 21.65 0.28 -55.07 16 22 Si 0.97 42.71 29.55 68.60 2.03 44.74 16 23 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.07 2.38 4.87 86.73 0.42 2.81 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.72 6.50 -2.38 -0.02 1.71 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.21 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.08 2.19 8.04 -2.39 -0.02 2.17 16 33 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 34 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.38 18.55 7.76 -92.71 -0.72 17.83 16 38 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.07 2.06 7.27 -2.39 -0.02 2.05 16 40 H 0.06 2.06 6.94 -2.39 -0.02 2.05 16 Total: -1.00 -63.39 327.20 2.56 -60.82 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.12 Total: 38.92 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 5.82 Total: 4.56 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -5.10 Total: -126.90 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.07 Total: -22.14 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.39 2.56 -60.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054617649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.125 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds