Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39829 * 126.45937 * 2 1 4 4 C 1.35452 * 107.86988 * 179.97438 * 3 2 1 5 5 N 1.35539 * 108.86737 * 359.77033 * 4 3 2 6 6 H 0.96997 * 125.67921 * 180.26849 * 5 4 3 7 7 C 1.37652 * 108.64583 * 0.37577 * 5 4 3 8 8 C 1.46669 * 126.23555 * 179.89044 * 7 5 4 9 9 O 1.21695 * 120.00387 * 179.68641 * 8 7 5 10 10 N 1.34776 * 120.00041 * 359.69176 * 8 7 5 11 11 C 1.47423 * 125.65089 * 179.97438 * 10 8 7 12 12 C 1.54904 * 104.83598 * 204.16416 * 11 10 8 13 13 H 1.09004 * 111.01008 * 81.06009 * 12 11 10 14 14 C 1.53005 * 111.00819 * 204.91950 * 12 11 10 15 15 C 1.55164 * 101.57969 * 322.98838 * 12 11 10 16 16 H 1.08998 * 110.86936 * 153.93152 * 15 12 11 17 17 N 1.46499 * 110.72208 * 277.13812 * 15 12 11 18 18 C 1.36935 * 119.99938 * 199.97653 * 17 15 12 19 19 H 1.07999 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99632 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99535 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 0.27829 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47020 * 125.64685 * 0.02562 * 10 8 7 27 27 H 1.09007 * 109.46823 * 270.03673 * 1 2 3 28 28 H 1.08993 * 109.46976 * 30.04126 * 1 2 3 29 29 H 1.08995 * 109.47224 * 150.04004 * 1 2 3 30 30 H 1.08000 * 126.06692 * 359.97438 * 3 2 1 31 31 H 1.07992 * 125.56782 * 179.97438 * 4 3 2 32 32 H 1.09005 * 110.36747 * 323.00202 * 11 10 8 33 33 H 1.08997 * 110.36777 * 85.20918 * 11 10 8 34 34 H 1.08993 * 109.46929 * 172.19873 * 14 12 11 35 35 H 1.09005 * 109.46297 * 292.19070 * 14 12 11 36 36 H 1.08997 * 109.47087 * 52.18925 * 14 12 11 37 37 H 0.97004 * 119.99469 * 19.97722 * 17 15 12 38 38 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 39 39 H 1.08996 * 109.88648 * 59.49006 * 26 10 8 40 40 H 1.09002 * 109.87959 * 298.31810 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6284 -0.6626 0.0061 6 1 4.4190 -1.2244 0.0113 7 6 2.3263 -1.1090 0.0005 8 6 1.8898 -2.5093 0.0015 9 8 0.7026 -2.7767 0.0019 10 7 2.8036 -3.4999 0.0020 11 6 2.5057 -4.9437 0.0034 12 6 3.7638 -5.6077 0.6165 13 1 3.7457 -5.5490 1.7048 14 6 3.9008 -7.0585 0.1499 15 6 4.8981 -4.7258 0.0308 16 1 5.7746 -4.7397 0.6786 17 7 5.2490 -5.1639 -1.3225 18 6 6.4595 -4.8185 -1.8616 19 1 7.1557 -4.2236 -1.2890 20 6 6.7921 -5.2341 -3.1436 21 7 7.9555 -4.9017 -3.6619 22 14 5.5855 -6.2577 -4.1362 23 1 5.8312 -7.6996 -3.8795 24 1 4.1976 -5.9132 -3.7360 25 1 5.7683 -5.9743 -5.5824 26 6 4.2628 -3.3197 0.0022 27 1 -0.3633 0.0007 1.0277 28 1 -0.3633 0.8896 -0.5144 29 1 -0.3633 -0.8903 -0.5132 30 1 2.0137 2.1548 -0.0004 31 1 4.4972 1.3252 0.0003 32 1 1.6300 -5.1498 0.6190 33 1 2.3450 -5.2990 -1.0144 34 1 4.8597 -7.4574 0.4806 35 1 3.0932 -7.6545 0.5751 36 1 3.8469 -7.0969 -0.9380 37 1 4.6238 -5.6985 -1.8365 38 1 8.1878 -5.1918 -4.5580 39 1 4.5667 -2.7575 0.8852 40 1 4.5712 -2.7920 -0.9003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054617651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = 11.668788 kcal Electronic energy + Delta-G solvation = -22105.951735 eV Core-core repulsion = 18921.132141 eV Total energy + Delta-G solvation = -3184.819594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42842 -40.72750 -39.00161 -35.91110 -34.29015 -33.34055 -32.70091 -30.70979 -29.88653 -28.16830 -27.08660 -25.59568 -23.95716 -22.29496 -21.73183 -20.98060 -19.89725 -19.83475 -18.59876 -17.41496 -17.28530 -16.55662 -16.19706 -15.99903 -15.61073 -15.03838 -14.91366 -14.61015 -14.43465 -14.21499 -13.90068 -13.65559 -13.60500 -13.55367 -13.25568 -13.17885 -13.10099 -12.93172 -12.55606 -12.43244 -12.15339 -12.00506 -11.66725 -11.46233 -11.16564 -10.99094 -9.89519 -9.69473 -9.38919 -9.09945 -8.05236 -5.38111 0.44113 1.34198 1.35388 1.41416 1.81217 1.85578 2.29279 2.29341 2.43933 3.23907 3.35362 3.48754 3.71347 3.77977 3.96433 4.22233 4.23769 4.25700 4.35993 4.40359 4.47903 4.58527 4.71973 4.81072 4.86242 4.88062 4.89926 4.96504 5.10194 5.13006 5.20109 5.24456 5.43332 5.44369 5.76212 5.80483 6.01049 6.18960 6.39446 6.50723 7.01225 7.04698 7.79871 7.96845 9.15432 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.005624 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.442632 B = 4977.148362 C = 5662.546955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.093 4.093 3 C -0.223 4.223 4 C 0.037 3.963 5 N -0.540 5.540 6 H 0.424 0.576 7 C -0.091 4.091 8 C 0.593 3.407 9 O -0.570 6.570 10 N -0.613 5.613 11 C 0.111 3.889 12 C -0.099 4.099 13 H 0.115 0.885 14 C -0.132 4.132 15 C 0.170 3.830 16 H 0.092 0.908 17 N -0.739 5.739 18 C -0.224 4.224 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.977 5.977 22 Si 0.936 3.064 23 H -0.274 1.274 24 H -0.265 1.265 25 H -0.302 1.302 26 C 0.069 3.931 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.167 0.833 31 H 0.209 0.791 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.364 0.636 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 6.882 11.537 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.247 4.247 4 C -0.100 4.100 5 N -0.141 5.141 6 H 0.267 0.733 7 C -0.203 4.203 8 C 0.386 3.614 9 O -0.452 6.452 10 N -0.346 5.346 11 C -0.011 4.011 12 C -0.119 4.119 13 H 0.134 0.866 14 C -0.190 4.190 15 C 0.060 3.940 16 H 0.110 0.890 17 N -0.381 5.381 18 C -0.355 4.355 19 H 0.091 0.909 20 C -0.244 4.244 21 N -0.627 5.627 22 Si 0.765 3.235 23 H -0.200 1.200 24 H -0.190 1.190 25 H -0.229 1.229 26 C -0.057 4.057 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.184 0.816 31 H 0.225 0.775 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.199 0.801 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.380 6.703 11.507 16.885 hybrid contribution 0.101 -0.825 -1.332 1.570 sum -10.280 5.879 10.175 15.613 Atomic orbital electron populations 1.20287 0.89107 1.02501 1.02236 1.20302 0.96464 0.91447 1.01998 1.21102 0.91729 0.99198 1.12671 1.22779 1.00802 0.82790 1.03659 1.42786 1.07090 1.08308 1.55904 0.73259 1.20106 0.85256 0.92778 1.22181 1.17065 0.84672 0.83524 0.76166 1.90736 1.16758 1.83863 1.53794 1.48419 1.07006 1.06780 1.72345 1.22341 0.99194 0.79041 1.00493 1.22635 0.92315 0.95464 1.01453 0.86647 1.21566 1.02902 0.94012 1.00481 1.21423 0.96335 0.89923 0.86301 0.89047 1.42829 1.17240 1.63564 1.14513 1.19048 0.92815 1.26164 0.97477 0.90908 1.25281 0.98055 1.02479 0.98625 1.69837 1.23450 1.52372 1.17066 0.85713 0.79878 0.79827 0.78126 1.20000 1.18998 1.22891 1.23224 0.79248 1.02358 1.00858 0.91199 0.90001 0.92765 0.81586 0.77476 0.89852 0.93137 0.91528 0.90365 0.94346 0.80110 0.93459 0.89614 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.83 71.24 0.70 -1.47 16 2 C -0.09 -2.62 6.21 -19.56 -0.12 -2.75 16 3 C -0.22 -4.94 10.76 22.01 0.24 -4.70 16 4 C 0.04 0.75 11.89 83.48 0.99 1.74 16 5 N -0.54 -13.69 5.61 -183.62 -1.03 -14.72 16 6 H 0.42 10.03 4.92 -92.71 -0.46 9.57 16 7 C -0.09 -2.83 6.89 40.35 0.28 -2.55 16 8 C 0.59 20.88 7.82 86.44 0.68 21.56 16 9 O -0.57 -22.68 15.06 -4.33 -0.07 -22.75 16 10 N -0.61 -19.57 3.33 -816.51 -2.72 -22.28 16 11 C 0.11 3.28 6.35 86.85 0.55 3.83 16 12 C -0.10 -2.52 3.51 -9.40 -0.03 -2.55 16 13 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.13 -3.28 8.85 71.98 0.64 -2.64 16 15 C 0.17 5.34 3.37 46.18 0.16 5.49 16 16 H 0.09 2.74 8.12 -2.39 -0.02 2.72 16 17 N -0.74 -30.39 4.42 -317.32 -1.40 -31.79 16 18 C -0.22 -11.45 10.46 84.03 0.88 -10.57 16 19 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 20 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 21 N -0.98 -59.48 13.97 21.65 0.30 -59.17 16 22 Si 0.94 44.12 27.74 68.60 1.90 46.03 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.26 -11.72 6.52 99.48 0.65 -11.07 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 26 C 0.07 2.04 4.85 86.73 0.42 2.46 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.67 6.48 -2.39 -0.02 1.65 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.08 2.32 8.04 -2.38 -0.02 2.30 16 33 H 0.05 1.65 7.99 -2.39 -0.02 1.63 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.04 1.11 6.38 -2.39 -0.02 1.10 16 37 H 0.36 15.20 3.96 -92.71 -0.37 14.84 16 38 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 39 H 0.09 2.06 7.07 -2.39 -0.02 2.04 16 40 H 0.06 2.03 7.15 -2.39 -0.02 2.01 16 Total: -1.00 -69.17 320.45 3.01 -66.16 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.18 Total: 33.11 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.84 Total: 5.43 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -4.85 Total: -127.97 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.03 kcal Total: -69.17 3.01 -66.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054617651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.825 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds