Wall clock time and date at job start Mon Mar 30 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39834 * 126.45677 * 2 1 4 4 C 1.35446 * 107.86664 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87039 * 359.72843 * 4 3 2 6 6 H 0.97000 * 125.67959 * 180.30666 * 5 4 3 7 7 C 1.37646 * 108.64405 * 0.44165 * 5 4 3 8 8 C 1.46681 * 126.23708 * 179.82786 * 7 5 4 9 9 O 1.21694 * 120.00726 * 187.04306 * 8 7 5 10 10 N 1.34779 * 119.99836 * 7.04481 * 8 7 5 11 11 C 1.47433 * 125.64798 * 358.31470 * 10 8 7 12 12 C 1.54904 * 104.83236 * 155.83730 * 11 10 8 13 13 H 1.09004 * 111.00094 * 278.89422 * 12 11 10 14 14 N 1.46503 * 111.00544 * 155.08425 * 12 11 10 15 15 C 1.36941 * 119.99807 * 86.44952 * 14 12 11 16 16 H 1.07997 * 120.00024 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99729 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99762 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99698 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47347 * 269.99962 * 19 17 15 21 21 H 1.48490 * 109.47403 * 30.00509 * 19 17 15 22 22 H 1.48505 * 109.46887 * 150.00261 * 19 17 15 23 23 C 1.55157 * 101.58155 * 37.00695 * 12 11 10 24 24 H 1.08992 * 110.71696 * 82.86661 * 23 12 11 25 25 C 1.53004 * 110.71635 * 206.13405 * 23 12 11 26 26 C 1.47020 * 125.65165 * 178.26978 * 10 8 7 27 27 H 1.09005 * 109.47323 * 270.04037 * 1 2 3 28 28 H 1.08997 * 109.47543 * 30.03796 * 1 2 3 29 29 H 1.09002 * 109.47334 * 150.04217 * 1 2 3 30 30 H 1.08008 * 126.06539 * 359.92832 * 3 2 1 31 31 H 1.08002 * 125.56745 * 180.02562 * 4 3 2 32 32 H 1.09003 * 110.36226 * 36.99297 * 11 10 8 33 33 H 1.09002 * 110.36408 * 274.67648 * 11 10 8 34 34 H 0.96996 * 119.99667 * 266.45677 * 14 12 11 35 35 H 0.96996 * 119.99516 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.47085 * 60.00677 * 25 23 12 37 37 H 1.09004 * 109.46745 * 180.02562 * 25 23 12 38 38 H 1.09006 * 109.47386 * 300.00021 * 25 23 12 39 39 H 1.08996 * 109.88206 * 300.51440 * 26 10 8 40 40 H 1.09006 * 109.87817 * 61.52708 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6624 0.0070 6 1 4.4190 -1.2243 0.0130 7 6 2.3263 -1.1088 0.0006 8 6 1.8898 -2.5092 0.0008 9 8 0.7110 -2.7793 -0.1345 10 7 2.7944 -3.4970 0.1508 11 6 4.2510 -3.3146 0.2884 12 6 4.7412 -4.5832 1.0299 13 1 4.5762 -4.4962 2.1039 14 7 6.1519 -4.8498 0.7382 15 6 7.1307 -4.2507 1.4854 16 1 6.8627 -3.5814 2.2895 17 6 8.4674 -4.5030 1.2086 18 7 9.4081 -3.9276 1.9272 19 14 8.9308 -5.6601 -0.1826 20 1 9.0345 -7.0462 0.3400 21 1 7.8889 -5.6062 -1.2392 22 1 10.2377 -5.2478 -0.7548 23 6 3.8294 -5.6765 0.4130 24 1 4.2312 -6.0212 -0.5397 25 6 3.6545 -6.8464 1.3835 26 6 2.4922 -4.9347 0.2055 27 1 -0.3634 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5144 29 1 -0.3634 -0.8904 -0.5132 30 1 2.0135 2.1549 -0.0011 31 1 4.4972 1.3253 0.0011 32 1 4.4677 -2.4233 0.8772 33 1 4.7189 -3.2445 -0.6936 34 1 6.3926 -5.4506 0.0157 35 1 10.3421 -4.1036 1.7335 36 1 3.1990 -6.4877 2.3065 37 1 3.0120 -7.6014 0.9303 38 1 4.6282 -7.2836 1.6048 39 1 1.8206 -5.1409 1.0388 40 1 2.0308 -5.2523 -0.7297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054617653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:20 Heat of formation + Delta-G solvation = 32.179060 kcal Electronic energy + Delta-G solvation = -21872.734562 eV Core-core repulsion = 18688.804360 eV Total energy + Delta-G solvation = -3183.930202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36353 -39.45026 -37.61121 -34.38711 -33.03989 -32.15326 -31.22618 -29.68240 -28.23544 -27.04508 -25.97671 -24.02000 -22.19701 -20.94790 -20.79224 -20.17643 -18.85231 -17.70502 -17.50890 -16.23515 -16.04447 -15.16515 -14.78581 -14.40367 -13.94734 -13.82815 -13.51319 -13.46584 -13.16876 -12.95836 -12.76278 -12.67964 -12.58250 -12.21671 -12.06908 -11.93147 -11.55057 -11.50228 -11.25515 -10.91964 -10.77927 -10.49413 -10.12036 -9.84641 -9.76500 -9.19003 -8.71867 -8.59724 -8.02792 -7.54336 -5.97787 -3.37152 1.58518 2.79998 3.00179 3.22455 3.25754 3.31956 3.34056 3.49521 4.39932 4.50533 4.81277 4.92083 4.96698 5.11403 5.22771 5.28713 5.36200 5.39950 5.46349 5.59264 5.61058 5.75347 5.79537 5.88046 5.90940 5.97579 5.98794 6.09344 6.16124 6.18183 6.32581 6.40575 6.44366 6.59369 6.83498 7.05511 7.47487 7.61756 7.75111 8.20411 8.27114 8.96488 9.68653 9.86422 11.19431 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.005344 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.740932 B = 5238.700251 C = 6399.200882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.082 4.082 3 C -0.216 4.216 4 C 0.023 3.977 5 N -0.540 5.540 6 H 0.424 0.576 7 C -0.055 4.055 8 C 0.602 3.398 9 O -0.539 6.539 10 N -0.616 5.616 11 C 0.060 3.940 12 C 0.185 3.815 13 H 0.077 0.923 14 N -0.734 5.734 15 C -0.260 4.260 16 H 0.092 0.908 17 C 0.014 3.986 18 N -0.926 5.926 19 Si 0.883 3.117 20 H -0.281 1.281 21 H -0.277 1.277 22 H -0.289 1.289 23 C -0.116 4.116 24 H 0.083 0.917 25 C -0.136 4.136 26 C 0.119 3.881 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.170 0.830 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.365 0.635 35 H 0.262 0.738 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 3.596 -4.311 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.241 4.241 4 C -0.114 4.114 5 N -0.142 5.142 6 H 0.270 0.730 7 C -0.168 4.168 8 C 0.393 3.607 9 O -0.417 6.417 10 N -0.350 5.350 11 C -0.066 4.066 12 C 0.073 3.927 13 H 0.095 0.905 14 N -0.376 5.376 15 C -0.389 4.389 16 H 0.110 0.890 17 C -0.183 4.183 18 N -0.572 5.572 19 Si 0.713 3.287 20 H -0.208 1.208 21 H -0.203 1.203 22 H -0.216 1.216 23 C -0.136 4.136 24 H 0.102 0.898 25 C -0.194 4.194 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.199 0.801 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.239 3.465 -4.204 14.316 hybrid contribution 1.182 -0.803 -1.003 1.746 sum -12.058 2.661 -5.207 13.401 Atomic orbital electron populations 1.20324 0.89564 1.02762 1.01939 1.19887 0.95679 0.90752 1.02712 1.20749 0.91836 0.98568 1.12921 1.22095 0.99552 0.83508 1.06217 1.43007 1.07914 1.07558 1.55711 0.73007 1.20129 0.83952 0.93243 1.19457 1.16752 0.84742 0.82583 0.76654 1.90763 1.16198 1.83104 1.51643 1.48403 1.07845 1.06704 1.72027 1.23664 0.78843 1.02754 1.01387 1.21309 0.84330 0.89575 0.97508 0.90538 1.42660 1.00138 1.55320 1.39433 1.19039 0.85470 1.22688 1.11728 0.89025 1.24680 0.95519 0.99457 0.98671 1.69694 0.99750 1.46347 1.41381 0.86589 0.77873 0.81548 0.82695 1.20786 1.20286 1.21554 1.22518 0.94535 0.96227 1.00310 0.89840 1.21687 1.02409 0.96836 0.98431 1.21966 0.97241 0.79347 1.01809 0.91865 0.92221 0.90128 0.84212 0.81263 0.91074 0.91002 0.80113 0.92752 0.92430 0.92864 0.91406 0.91182 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.91 36.00 0.36 -0.79 16 2 C -0.08 -1.19 6.21 -104.16 -0.65 -1.83 16 3 C -0.22 -2.71 10.76 -39.98 -0.43 -3.14 16 4 C 0.02 0.28 11.89 -16.91 -0.20 0.08 16 5 N -0.54 -7.48 5.40 -9.39 -0.05 -7.53 16 6 H 0.42 5.71 5.18 -40.82 -0.21 5.50 16 7 C -0.05 -0.86 6.85 -81.98 -0.56 -1.42 16 8 C 0.60 10.22 7.81 -12.85 -0.10 10.12 16 9 O -0.54 -10.13 15.11 5.19 0.08 -10.05 16 10 N -0.62 -9.63 3.33 -172.06 -0.57 -10.20 16 11 C 0.06 0.95 5.17 -2.53 -0.01 0.93 16 12 C 0.18 3.14 3.13 -65.78 -0.21 2.94 16 13 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 14 N -0.73 -15.25 5.08 -51.35 -0.26 -15.51 16 15 C -0.26 -6.59 10.47 -15.06 -0.16 -6.75 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 18 N -0.93 -27.17 13.97 55.49 0.78 -26.39 16 19 Si 0.88 20.42 27.74 -169.99 -4.71 15.71 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -5.97 6.52 56.52 0.37 -5.60 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 C -0.12 -1.63 3.17 -88.79 -0.28 -1.91 16 24 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 25 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 26 C 0.12 1.67 6.46 -3.07 -0.02 1.65 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.17 6.36 -51.93 -0.33 0.84 16 30 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.07 1.12 5.50 -51.93 -0.29 0.83 16 33 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 34 H 0.37 7.51 5.57 -40.82 -0.23 7.28 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -30.37 323.63 -7.57 -37.93 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.68 Total: 12.37 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.02 Total: -1.21 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.11 Total: -59.63 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.71 Total: 15.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.37 -7.57 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054617653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.113 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds