Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39834 * 126.45677 * 2 1 4 4 C 1.35446 * 107.86664 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87039 * 359.72843 * 4 3 2 6 6 H 0.97000 * 125.67959 * 180.30666 * 5 4 3 7 7 C 1.37646 * 108.64405 * 0.44165 * 5 4 3 8 8 C 1.46681 * 126.23708 * 179.82786 * 7 5 4 9 9 O 1.21694 * 120.00726 * 187.04306 * 8 7 5 10 10 N 1.34779 * 119.99836 * 7.04481 * 8 7 5 11 11 C 1.47433 * 125.64798 * 358.31470 * 10 8 7 12 12 C 1.54904 * 104.83236 * 155.83730 * 11 10 8 13 13 H 1.09004 * 111.00094 * 278.89422 * 12 11 10 14 14 N 1.46503 * 111.00544 * 155.08425 * 12 11 10 15 15 C 1.36941 * 119.99807 * 86.44952 * 14 12 11 16 16 H 1.07997 * 120.00024 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99729 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99762 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99698 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47347 * 269.99962 * 19 17 15 21 21 H 1.48490 * 109.47403 * 30.00509 * 19 17 15 22 22 H 1.48505 * 109.46887 * 150.00261 * 19 17 15 23 23 C 1.55157 * 101.58155 * 37.00695 * 12 11 10 24 24 H 1.08992 * 110.71696 * 82.86661 * 23 12 11 25 25 C 1.53004 * 110.71635 * 206.13405 * 23 12 11 26 26 C 1.47020 * 125.65165 * 178.26978 * 10 8 7 27 27 H 1.09005 * 109.47323 * 270.04037 * 1 2 3 28 28 H 1.08997 * 109.47543 * 30.03796 * 1 2 3 29 29 H 1.09002 * 109.47334 * 150.04217 * 1 2 3 30 30 H 1.08008 * 126.06539 * 359.92832 * 3 2 1 31 31 H 1.08002 * 125.56745 * 180.02562 * 4 3 2 32 32 H 1.09003 * 110.36226 * 36.99297 * 11 10 8 33 33 H 1.09002 * 110.36408 * 274.67648 * 11 10 8 34 34 H 0.96996 * 119.99667 * 266.45677 * 14 12 11 35 35 H 0.96996 * 119.99516 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.47085 * 60.00677 * 25 23 12 37 37 H 1.09004 * 109.46745 * 180.02562 * 25 23 12 38 38 H 1.09006 * 109.47386 * 300.00021 * 25 23 12 39 39 H 1.08996 * 109.88206 * 300.51440 * 26 10 8 40 40 H 1.09006 * 109.87817 * 61.52708 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6624 0.0070 6 1 4.4190 -1.2243 0.0130 7 6 2.3263 -1.1088 0.0006 8 6 1.8898 -2.5092 0.0008 9 8 0.7110 -2.7793 -0.1345 10 7 2.7944 -3.4970 0.1508 11 6 4.2510 -3.3146 0.2884 12 6 4.7412 -4.5832 1.0299 13 1 4.5762 -4.4962 2.1039 14 7 6.1519 -4.8498 0.7382 15 6 7.1307 -4.2507 1.4854 16 1 6.8627 -3.5814 2.2895 17 6 8.4674 -4.5030 1.2086 18 7 9.4081 -3.9276 1.9272 19 14 8.9308 -5.6601 -0.1826 20 1 9.0345 -7.0462 0.3400 21 1 7.8889 -5.6062 -1.2392 22 1 10.2377 -5.2478 -0.7548 23 6 3.8294 -5.6765 0.4130 24 1 4.2312 -6.0212 -0.5397 25 6 3.6545 -6.8464 1.3835 26 6 2.4922 -4.9347 0.2055 27 1 -0.3634 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5144 29 1 -0.3634 -0.8904 -0.5132 30 1 2.0135 2.1549 -0.0011 31 1 4.4972 1.3253 0.0011 32 1 4.4677 -2.4233 0.8772 33 1 4.7189 -3.2445 -0.6936 34 1 6.3926 -5.4506 0.0157 35 1 10.3421 -4.1036 1.7335 36 1 3.1990 -6.4877 2.3065 37 1 3.0120 -7.6014 0.9303 38 1 4.6282 -7.2836 1.6048 39 1 1.8206 -5.1409 1.0388 40 1 2.0308 -5.2523 -0.7297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054617653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = 12.883668 kcal Electronic energy + Delta-G solvation = -21873.571273 eV Core-core repulsion = 18688.804360 eV Total energy + Delta-G solvation = -3184.766913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45462 -40.67999 -38.95022 -36.06153 -34.32677 -33.37087 -32.91846 -30.73395 -29.69342 -28.16245 -27.06939 -25.70862 -23.53713 -22.27869 -21.84621 -21.49869 -19.94912 -19.53685 -18.69843 -17.52400 -17.35211 -16.46249 -16.27239 -15.89551 -15.22199 -15.01092 -14.87733 -14.79879 -14.54806 -14.26388 -13.95926 -13.86253 -13.61160 -13.52288 -13.24093 -13.15407 -12.98777 -12.95943 -12.55779 -12.31782 -12.13162 -11.98008 -11.83867 -11.46079 -11.14408 -10.98956 -9.92128 -9.70549 -9.40952 -9.10601 -8.04174 -5.40743 0.43480 1.39861 1.42396 1.49253 1.77984 1.81607 2.24827 2.29511 2.47214 3.21895 3.25323 3.56484 3.69473 3.75443 4.00572 4.16156 4.21627 4.23238 4.30842 4.37425 4.40920 4.61429 4.70797 4.79669 4.86759 4.89932 4.94673 4.98025 5.04452 5.11685 5.20237 5.27298 5.40818 5.44079 5.74239 5.80018 6.00957 6.18424 6.34279 6.47043 6.99700 7.04064 7.76123 7.96128 9.16266 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.005344 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.740932 B = 5238.700251 C = 6399.200882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.091 4.091 3 C -0.221 4.221 4 C 0.032 3.968 5 N -0.544 5.544 6 H 0.423 0.577 7 C -0.092 4.092 8 C 0.597 3.403 9 O -0.565 6.565 10 N -0.616 5.616 11 C 0.072 3.928 12 C 0.177 3.823 13 H 0.064 0.936 14 N -0.733 5.733 15 C -0.236 4.236 16 H 0.061 0.939 17 C -0.052 4.052 18 N -0.978 5.978 19 Si 0.948 3.052 20 H -0.280 1.280 21 H -0.248 1.248 22 H -0.300 1.300 23 C -0.103 4.103 24 H 0.093 0.907 25 C -0.133 4.133 26 C 0.118 3.882 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.167 0.833 31 H 0.204 0.796 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.370 0.630 35 H 0.258 0.742 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 3.574 -5.666 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.245 4.245 4 C -0.105 4.105 5 N -0.146 5.146 6 H 0.269 0.731 7 C -0.204 4.204 8 C 0.389 3.611 9 O -0.445 6.445 10 N -0.349 5.349 11 C -0.055 4.055 12 C 0.067 3.933 13 H 0.082 0.918 14 N -0.375 5.375 15 C -0.367 4.367 16 H 0.079 0.921 17 C -0.244 4.244 18 N -0.628 5.628 19 Si 0.776 3.224 20 H -0.206 1.206 21 H -0.173 1.173 22 H -0.227 1.227 23 C -0.122 4.122 24 H 0.111 0.889 25 C -0.191 4.191 26 C -0.004 4.004 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.184 0.816 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.246 3.424 -5.575 15.676 hybrid contribution 1.384 -0.690 -0.509 1.629 sum -12.861 2.733 -6.085 14.488 Atomic orbital electron populations 1.20320 0.88863 1.02931 1.02200 1.20303 0.96538 0.91267 1.01908 1.21106 0.91589 0.99306 1.12501 1.22763 1.00835 0.82949 1.03909 1.43026 1.07260 1.08333 1.55952 0.73138 1.20147 0.85049 0.92996 1.22190 1.16998 0.84526 0.83317 0.76270 1.90738 1.17077 1.83626 1.53101 1.48407 1.07468 1.07288 1.71703 1.23405 0.79076 1.01801 1.01175 1.21424 0.82992 0.91621 0.97267 0.91810 1.42537 1.00826 1.55149 1.39033 1.18965 0.86395 1.20875 1.10432 0.92073 1.25413 0.95554 1.01812 1.01648 1.69867 0.99931 1.49006 1.43955 0.85522 0.77565 0.79080 0.80248 1.20582 1.17284 1.22729 1.22459 0.93388 0.95637 1.00767 0.88892 1.21677 1.02318 0.96739 0.98330 1.22070 0.97298 0.78462 1.02547 0.91507 0.89820 0.92116 0.81552 0.77966 0.91309 0.90734 0.79544 0.93281 0.92351 0.90306 0.92584 0.90780 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.14 9.91 71.24 0.71 -1.43 16 2 C -0.09 -2.54 6.21 -19.57 -0.12 -2.66 16 3 C -0.22 -5.00 10.76 22.01 0.24 -4.76 16 4 C 0.03 0.71 11.89 83.48 0.99 1.70 16 5 N -0.54 -14.46 5.40 -183.63 -0.99 -15.45 16 6 H 0.42 11.07 5.18 -92.71 -0.48 10.59 16 7 C -0.09 -2.83 6.85 40.35 0.28 -2.55 16 8 C 0.60 20.11 7.81 86.45 0.68 20.78 16 9 O -0.56 -21.25 15.11 -4.33 -0.07 -21.32 16 10 N -0.62 -18.72 3.33 -816.48 -2.72 -21.44 16 11 C 0.07 2.20 5.17 86.85 0.45 2.65 16 12 C 0.18 5.86 3.13 46.38 0.15 6.01 16 13 H 0.06 2.29 8.04 -2.38 -0.02 2.27 16 14 N -0.73 -29.60 5.08 -316.37 -1.61 -31.20 16 15 C -0.24 -12.03 10.47 84.03 0.88 -11.15 16 16 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 17 C -0.05 -2.81 5.50 84.86 0.47 -2.34 16 18 N -0.98 -58.75 13.97 21.65 0.30 -58.45 16 19 Si 0.95 41.70 27.74 68.60 1.90 43.61 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.25 -9.63 6.52 99.48 0.65 -8.98 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 23 C -0.10 -2.66 3.17 -9.61 -0.03 -2.70 16 24 H 0.09 2.29 8.00 -2.39 -0.02 2.27 16 25 C -0.13 -3.04 9.16 71.98 0.66 -2.38 16 26 C 0.12 3.12 6.46 86.73 0.56 3.68 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.75 6.36 -2.39 -0.02 1.74 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.07 2.15 5.50 -2.39 -0.01 2.14 16 33 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 34 H 0.37 14.33 5.57 -92.71 -0.52 13.81 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.91 7.76 -2.39 -0.02 1.89 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -66.26 323.63 2.72 -63.54 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.00 Total: 35.86 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.90 Total: 4.86 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -5.01 Total: -126.54 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.32 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.90 Total: 43.61 kcal Total: -66.26 2.72 -63.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054617653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.419 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds