Wall clock time and date at job start Mon Mar 30 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34662 * 125.79599 * 2 1 4 4 H 0.96996 * 124.85882 * 359.95833 * 3 2 1 5 5 C 1.36450 * 110.29428 * 179.97438 * 3 2 1 6 6 C 1.34485 * 108.85779 * 359.70998 * 5 3 2 7 7 C 1.36763 * 125.80525 * 179.97438 * 2 1 3 8 8 C 1.47265 * 126.94208 * 0.02562 * 7 2 1 9 9 O 1.21630 * 119.99481 * 0.02562 * 8 7 2 10 10 N 1.34772 * 120.00357 * 180.02562 * 8 7 2 11 11 C 1.46494 * 120.00205 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.64673 * 31.85482 * 11 10 8 13 13 C 1.54325 * 110.71746 * 268.51857 * 11 10 8 14 14 N 1.47019 * 107.27281 * 219.44528 * 13 11 10 15 15 C 1.36935 * 125.65054 * 178.92168 * 14 13 11 16 16 H 1.08002 * 119.99999 * 174.87086 * 15 14 13 17 17 C 1.38817 * 120.00054 * 354.87085 * 15 14 13 18 18 N 1.31619 * 119.99434 * 7.06227 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 187.06380 * 17 15 14 20 20 H 1.48498 * 109.47415 * 94.98875 * 19 17 15 21 21 H 1.48506 * 109.46809 * 214.98635 * 19 17 15 22 22 H 1.48500 * 109.47433 * 334.98459 * 19 17 15 23 23 C 1.47426 * 108.70568 * 358.93980 * 14 13 11 24 24 C 1.54912 * 104.82834 * 24.12822 * 23 14 13 25 25 H 1.09001 * 111.03868 * 81.07853 * 24 23 14 26 26 C 1.52995 * 111.00391 * 204.91703 * 24 23 14 27 27 H 1.09005 * 109.47094 * 270.02740 * 1 2 3 28 28 H 1.08997 * 109.47342 * 30.02447 * 1 2 3 29 29 H 1.08996 * 109.47110 * 150.02797 * 1 2 3 30 30 H 1.08001 * 125.57571 * 179.97438 * 5 3 2 31 31 H 1.08001 * 126.83893 * 180.26417 * 6 5 3 32 32 H 0.97002 * 119.99553 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.88133 * 338.86175 * 13 11 10 34 34 H 1.09000 * 109.88030 * 100.02693 * 13 11 10 35 35 H 0.97003 * 119.99239 * 180.02562 * 18 17 15 36 36 H 1.09004 * 110.36692 * 265.29454 * 23 14 13 37 37 H 1.08996 * 110.36965 * 142.96322 * 23 14 13 38 38 H 1.09009 * 109.47255 * 172.20076 * 26 24 23 39 39 H 1.08993 * 109.47595 * 52.19822 * 26 24 23 40 40 H 1.09002 * 109.47372 * 292.19688 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0923 0.0000 4 1 1.9733 2.0074 -0.0006 5 6 3.6095 0.7276 0.0006 6 6 3.6882 -0.6150 0.0074 7 6 2.3071 -1.1092 0.0005 8 6 1.8703 -2.5156 0.0006 9 8 0.6840 -2.7838 -0.0003 10 7 2.7850 -3.5053 0.0016 11 6 2.3505 -4.9043 0.0012 12 1 1.4098 -5.0144 -0.5382 13 6 2.2226 -5.4368 1.4440 14 7 2.7282 -6.8173 1.4463 15 6 2.8064 -7.6368 2.5406 16 1 3.1161 -8.6649 2.4243 17 6 2.4874 -7.1461 3.7994 18 7 1.9781 -5.9391 3.9255 19 14 2.7812 -8.1990 5.3141 20 1 4.1004 -7.8590 5.9051 21 1 1.7110 -7.9414 6.3111 22 1 2.7654 -9.6335 4.9306 23 6 3.1375 -7.1732 0.0755 24 6 3.4444 -5.8188 -0.6109 25 1 4.4414 -5.4644 -0.3489 26 6 3.2845 -5.9245 -2.1288 27 1 -0.3633 0.0005 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.4497 1.4061 0.0003 31 1 4.5890 -1.2108 0.0135 32 1 3.7312 -3.2913 0.0019 33 1 2.8180 -4.8229 2.1198 34 1 1.1772 -5.4243 1.7524 35 1 1.7556 -5.5961 4.8051 36 1 2.3261 -7.6853 -0.4418 37 1 4.0299 -7.7987 0.0963 38 1 3.3693 -4.9327 -2.5731 39 1 2.3065 -6.3450 -2.3627 40 1 4.0639 -6.5711 -2.5321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079547836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:56 Heat of formation + Delta-G solvation = 28.306904 kcal Electronic energy + Delta-G solvation = -21730.464626 eV Core-core repulsion = 18546.366515 eV Total energy + Delta-G solvation = -3184.098111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15210 -38.94852 -37.19135 -33.74162 -32.54816 -31.45047 -30.91888 -30.28443 -27.73164 -26.21109 -25.51710 -23.73165 -22.14593 -20.71400 -20.12224 -19.69839 -18.79231 -17.62688 -16.77646 -15.67866 -15.63241 -14.94661 -14.74754 -14.03157 -13.75140 -13.55469 -13.48107 -13.01745 -12.95550 -12.72069 -12.62602 -12.53401 -12.44441 -11.86372 -11.60630 -11.47980 -11.24090 -10.91980 -10.72980 -10.47495 -10.28359 -9.88882 -9.83889 -9.59992 -9.28737 -8.81213 -8.51818 -8.30736 -8.04522 -6.74042 -5.62133 -2.96147 1.95163 2.47705 3.12980 3.45580 3.50235 3.53033 3.89112 4.01457 4.57481 4.86521 4.98978 5.17370 5.22261 5.37407 5.41201 5.56311 5.59904 5.63605 5.70318 5.87249 5.90560 6.01194 6.11207 6.11481 6.25788 6.27252 6.34814 6.47719 6.61473 6.72632 6.79675 6.95106 6.97204 7.12194 7.43190 7.66469 7.75095 7.95893 8.20203 8.34918 8.90310 9.29825 9.90805 10.56965 11.48638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.004825 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.448274 B = 5801.488321 C = 6585.898333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.023 4.023 6 C -0.166 4.166 7 C -0.226 4.226 8 C 0.588 3.412 9 O -0.552 6.552 10 N -0.707 5.707 11 C 0.123 3.877 12 H 0.088 0.912 13 C 0.172 3.828 14 N -0.607 5.607 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 0.909 3.091 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.076 0.924 26 C -0.136 4.136 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.394 0.606 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.252 0.748 36 H 0.021 0.979 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 14.229 -11.292 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.018 4.018 3 N -0.152 5.152 4 H 0.249 0.751 5 C -0.150 4.150 6 C -0.191 4.191 7 C -0.236 4.236 8 C 0.377 3.623 9 O -0.431 6.431 10 N -0.356 5.356 11 C 0.018 3.982 12 H 0.106 0.894 13 C 0.046 3.954 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.015 3.985 24 C -0.134 4.134 25 H 0.094 0.906 26 C -0.194 4.194 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.162 0.838 32 H 0.228 0.772 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.470 14.143 -11.055 18.120 hybrid contribution 0.691 0.108 1.010 1.228 sum 3.161 14.251 -10.045 17.720 Atomic orbital electron populations 1.20566 0.87065 1.03933 1.03578 1.20339 0.93723 0.85617 1.02084 1.41558 1.06249 1.08243 1.59180 0.75095 1.21652 0.85611 0.96417 1.11354 1.22058 0.95985 0.93630 1.07401 1.20278 0.93080 0.92472 1.17791 1.17279 0.85511 0.83885 0.75658 1.90721 1.16652 1.84351 1.51410 1.45667 1.09132 1.05948 1.74889 1.22431 0.97177 0.78717 0.99892 0.89427 1.21488 0.99300 0.85198 0.89367 1.44429 1.74037 1.11928 1.02931 1.19056 1.39628 0.92795 0.84433 0.90364 1.24841 1.01195 0.96828 0.97470 1.70012 1.47510 1.16725 1.22023 0.86141 0.77409 0.79323 0.83167 1.21707 1.21825 1.20639 1.21588 0.97021 0.93272 0.86666 1.22613 0.98647 0.97731 0.94427 0.90561 1.21690 1.01546 1.01005 0.95188 0.90404 0.92251 0.87880 0.81604 0.83826 0.77189 0.93010 0.93722 0.93798 0.96149 0.94058 0.93090 0.92661 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.88 36.00 0.36 -0.76 16 2 C 0.10 1.31 7.17 -81.88 -0.59 0.72 16 3 N -0.56 -5.36 5.90 -9.11 -0.05 -5.41 16 4 H 0.41 2.46 8.96 -40.82 -0.37 2.10 16 5 C -0.02 -0.23 11.89 -16.82 -0.20 -0.43 16 6 C -0.17 -2.07 10.56 -37.50 -0.40 -2.47 16 7 C -0.23 -3.52 6.29 -103.35 -0.65 -4.17 16 8 C 0.59 11.10 7.81 -12.59 -0.10 11.00 16 9 O -0.55 -12.10 14.46 5.25 0.08 -12.02 16 10 N -0.71 -12.65 5.10 -53.16 -0.27 -12.92 16 11 C 0.12 2.50 2.79 -66.10 -0.18 2.31 16 12 H 0.09 1.89 7.44 -51.93 -0.39 1.50 16 13 C 0.17 4.46 5.13 -3.06 -0.02 4.44 16 14 N -0.61 -16.07 3.39 -170.07 -0.58 -16.65 16 15 C -0.23 -6.64 10.27 -15.06 -0.15 -6.79 16 16 H 0.08 2.16 7.84 -52.49 -0.41 1.74 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -28.15 10.36 55.49 0.57 -27.58 16 19 Si 0.91 22.69 29.56 -169.99 -5.02 17.67 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.14 2.98 6.70 -2.53 -0.02 2.96 16 24 C -0.11 -2.01 3.27 -88.47 -0.29 -2.30 16 25 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 26 C -0.14 -1.94 9.31 37.15 0.35 -1.59 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 1.47 6.46 -51.93 -0.34 1.13 16 30 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.54 7.70 -52.49 -0.40 1.13 16 32 H 0.39 6.03 7.68 -40.82 -0.31 5.72 16 33 H 0.05 1.48 7.18 -51.93 -0.37 1.10 16 34 H 0.04 1.34 7.61 -51.93 -0.40 0.94 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -35.31 328.65 -8.22 -43.53 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.91 Total: 5.79 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.99 Total: 2.64 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.33 Total: -62.56 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.31 -8.22 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079547836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.833 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds