Wall clock time and date at job start Mon Mar 30 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34662 * 125.79599 * 2 1 4 4 H 0.96996 * 124.85882 * 359.95833 * 3 2 1 5 5 C 1.36450 * 110.29428 * 179.97438 * 3 2 1 6 6 C 1.34485 * 108.85779 * 359.70998 * 5 3 2 7 7 C 1.36763 * 125.80525 * 179.97438 * 2 1 3 8 8 C 1.47265 * 126.94208 * 0.02562 * 7 2 1 9 9 O 1.21630 * 119.99481 * 0.02562 * 8 7 2 10 10 N 1.34772 * 120.00357 * 180.02562 * 8 7 2 11 11 C 1.46494 * 120.00205 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.64673 * 31.85482 * 11 10 8 13 13 C 1.54325 * 110.71746 * 268.51857 * 11 10 8 14 14 N 1.47019 * 107.27281 * 219.44528 * 13 11 10 15 15 C 1.36935 * 125.65054 * 178.92168 * 14 13 11 16 16 H 1.08002 * 119.99999 * 174.87086 * 15 14 13 17 17 C 1.38817 * 120.00054 * 354.87085 * 15 14 13 18 18 N 1.31619 * 119.99434 * 7.06227 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 187.06380 * 17 15 14 20 20 H 1.48498 * 109.47415 * 94.98875 * 19 17 15 21 21 H 1.48506 * 109.46809 * 214.98635 * 19 17 15 22 22 H 1.48500 * 109.47433 * 334.98459 * 19 17 15 23 23 C 1.47426 * 108.70568 * 358.93980 * 14 13 11 24 24 C 1.54912 * 104.82834 * 24.12822 * 23 14 13 25 25 H 1.09001 * 111.03868 * 81.07853 * 24 23 14 26 26 C 1.52995 * 111.00391 * 204.91703 * 24 23 14 27 27 H 1.09005 * 109.47094 * 270.02740 * 1 2 3 28 28 H 1.08997 * 109.47342 * 30.02447 * 1 2 3 29 29 H 1.08996 * 109.47110 * 150.02797 * 1 2 3 30 30 H 1.08001 * 125.57571 * 179.97438 * 5 3 2 31 31 H 1.08001 * 126.83893 * 180.26417 * 6 5 3 32 32 H 0.97002 * 119.99553 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.88133 * 338.86175 * 13 11 10 34 34 H 1.09000 * 109.88030 * 100.02693 * 13 11 10 35 35 H 0.97003 * 119.99239 * 180.02562 * 18 17 15 36 36 H 1.09004 * 110.36692 * 265.29454 * 23 14 13 37 37 H 1.08996 * 110.36965 * 142.96322 * 23 14 13 38 38 H 1.09009 * 109.47255 * 172.20076 * 26 24 23 39 39 H 1.08993 * 109.47595 * 52.19822 * 26 24 23 40 40 H 1.09002 * 109.47372 * 292.19688 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0923 0.0000 4 1 1.9733 2.0074 -0.0006 5 6 3.6095 0.7276 0.0006 6 6 3.6882 -0.6150 0.0074 7 6 2.3071 -1.1092 0.0005 8 6 1.8703 -2.5156 0.0006 9 8 0.6840 -2.7838 -0.0003 10 7 2.7850 -3.5053 0.0016 11 6 2.3505 -4.9043 0.0012 12 1 1.4098 -5.0144 -0.5382 13 6 2.2226 -5.4368 1.4440 14 7 2.7282 -6.8173 1.4463 15 6 2.8064 -7.6368 2.5406 16 1 3.1161 -8.6649 2.4243 17 6 2.4874 -7.1461 3.7994 18 7 1.9781 -5.9391 3.9255 19 14 2.7812 -8.1990 5.3141 20 1 4.1004 -7.8590 5.9051 21 1 1.7110 -7.9414 6.3111 22 1 2.7654 -9.6335 4.9306 23 6 3.1375 -7.1732 0.0755 24 6 3.4444 -5.8188 -0.6109 25 1 4.4414 -5.4644 -0.3489 26 6 3.2845 -5.9245 -2.1288 27 1 -0.3633 0.0005 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.4497 1.4061 0.0003 31 1 4.5890 -1.2108 0.0135 32 1 3.7312 -3.2913 0.0019 33 1 2.8180 -4.8229 2.1198 34 1 1.1772 -5.4243 1.7524 35 1 1.7556 -5.5961 4.8051 36 1 2.3261 -7.6853 -0.4418 37 1 4.0299 -7.7987 0.0963 38 1 3.3693 -4.9327 -2.5731 39 1 2.3065 -6.3450 -2.3627 40 1 4.0639 -6.5711 -2.5321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079547836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:55 Heat of formation + Delta-G solvation = 2.805898 kcal Electronic energy + Delta-G solvation = -21731.570433 eV Core-core repulsion = 18546.366515 eV Total energy + Delta-G solvation = -3185.203918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11477 -40.49755 -38.86945 -35.56444 -34.25574 -32.41480 -32.21190 -31.91774 -29.47938 -27.48964 -27.10992 -25.42515 -23.58272 -21.91643 -21.67430 -21.25285 -20.14269 -18.86268 -18.54556 -17.26404 -17.07470 -16.69530 -16.02784 -15.62882 -15.41874 -14.94077 -14.71616 -14.48047 -14.21045 -14.05490 -13.94978 -13.69150 -13.57046 -13.40653 -13.32600 -13.00957 -12.84878 -12.58739 -12.44232 -12.15657 -11.99790 -11.86269 -11.63704 -11.43059 -10.81363 -10.71081 -9.99660 -9.65913 -9.06759 -8.91655 -7.84616 -5.22217 0.80193 1.44451 1.47426 1.56669 1.59464 2.17871 2.48345 2.59977 2.67628 3.33013 3.62903 3.78045 3.96332 4.09624 4.13257 4.13926 4.32236 4.36583 4.53144 4.63923 4.70523 4.72924 4.74921 4.89653 5.01751 5.07559 5.08031 5.10466 5.24507 5.29856 5.40570 5.45496 5.51500 5.65776 5.82172 5.85214 6.02575 6.17230 6.68938 6.81514 7.06774 7.46832 7.76215 8.41293 9.25141 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.004825 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.448274 B = 5801.488321 C = 6585.898333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.096 3.904 3 N -0.537 5.537 4 H 0.434 0.566 5 C 0.002 3.998 6 C -0.190 4.190 7 C -0.270 4.270 8 C 0.579 3.421 9 O -0.596 6.596 10 N -0.699 5.699 11 C 0.138 3.862 12 H 0.072 0.928 13 C 0.189 3.811 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.089 0.911 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.982 3.018 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.263 1.263 23 C 0.133 3.867 24 C -0.094 4.094 25 H 0.090 0.910 26 C -0.127 4.127 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.212 0.788 31 H 0.156 0.844 32 H 0.408 0.592 33 H 0.017 0.983 34 H -0.014 1.014 35 H 0.244 0.756 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 15.482 -12.646 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.126 4.126 6 C -0.213 4.213 7 C -0.280 4.280 8 C 0.370 3.630 9 O -0.479 6.479 10 N -0.349 5.349 11 C 0.032 3.968 12 H 0.090 0.910 13 C 0.062 3.938 14 N -0.355 5.355 15 C -0.373 4.373 16 H 0.107 0.893 17 C -0.262 4.262 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.188 1.188 23 C 0.008 3.992 24 C -0.114 4.114 25 H 0.108 0.892 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.229 0.771 31 H 0.174 0.826 32 H 0.245 0.755 33 H 0.035 0.965 34 H 0.004 0.996 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.782 15.411 -12.455 20.384 hybrid contribution -0.043 -0.237 1.413 1.433 sum 4.739 15.175 -11.042 19.356 Atomic orbital electron populations 1.20512 0.86768 1.04317 1.03348 1.20427 0.94252 0.86223 1.01456 1.41556 1.05997 1.08496 1.57356 0.72602 1.22312 0.86402 0.96078 1.07803 1.22293 0.94913 0.95113 1.08998 1.20236 0.95603 0.90957 1.21178 1.17947 0.84973 0.85536 0.74532 1.90689 1.18456 1.85256 1.53453 1.45510 1.09905 1.04775 1.74696 1.22009 0.98130 0.80640 0.96065 0.91001 1.21107 0.94963 0.85385 0.92300 1.44757 1.74131 1.11857 1.04731 1.19550 1.38669 0.93652 0.85469 0.89294 1.25777 1.01399 0.98262 1.00766 1.70286 1.49032 1.18843 1.22001 0.85011 0.76892 0.78394 0.78762 1.21063 1.22537 1.18755 1.21858 0.97556 0.95529 0.84253 1.22537 0.97896 0.94356 0.96601 0.89174 1.21635 1.02384 1.02554 0.91926 0.90912 0.88429 0.90897 0.77124 0.82630 0.75528 0.96460 0.99625 0.94665 0.95697 0.92475 0.91681 0.93042 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 9.88 71.24 0.70 -1.48 16 2 C 0.10 2.44 7.17 41.78 0.30 2.74 16 3 N -0.54 -8.68 5.90 -182.72 -1.08 -9.76 16 4 H 0.43 3.46 8.96 -92.71 -0.83 2.63 16 5 C 0.00 0.03 11.89 83.12 0.99 1.01 16 6 C -0.19 -4.37 10.56 23.62 0.25 -4.12 16 7 C -0.27 -8.42 6.29 -19.04 -0.12 -8.54 16 8 C 0.58 22.94 7.81 86.62 0.68 23.61 16 9 O -0.60 -28.09 14.46 -4.13 -0.06 -28.15 16 10 N -0.70 -25.81 5.10 -440.34 -2.24 -28.05 16 11 C 0.14 5.81 2.79 46.18 0.13 5.94 16 12 H 0.07 3.27 7.44 -2.39 -0.02 3.25 16 13 C 0.19 10.43 5.13 86.73 0.45 10.87 16 14 N -0.63 -34.29 3.39 -691.98 -2.35 -36.64 16 15 C -0.24 -14.35 10.27 84.03 0.86 -13.48 16 16 H 0.09 4.89 7.84 -2.91 -0.02 4.87 16 17 C -0.07 -4.16 5.48 84.86 0.46 -3.69 16 18 N -0.95 -61.72 10.36 21.65 0.22 -61.50 16 19 Si 0.98 47.67 29.56 68.60 2.03 49.70 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.13 5.55 6.70 86.86 0.58 6.13 16 24 C -0.09 -3.21 3.27 -9.40 -0.03 -3.24 16 25 H 0.09 2.86 8.01 -2.39 -0.02 2.84 16 26 C -0.13 -3.27 9.31 71.98 0.67 -2.60 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.21 6.46 -2.39 -0.02 2.19 16 30 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.16 3.04 7.70 -2.91 -0.02 3.01 16 32 H 0.41 12.50 7.68 -92.71 -0.71 11.79 16 33 H 0.02 1.05 7.18 -2.39 -0.02 1.04 16 34 H -0.01 -0.95 7.61 -2.39 -0.02 -0.97 16 35 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.03 1.03 7.98 -2.38 -0.02 1.01 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.05 1.38 8.07 -2.39 -0.02 1.36 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -83.46 328.65 1.96 -81.51 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.48 Total: 19.74 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.92 Total: 13.14 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -5.45 Total: -135.94 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -83.46 1.96 -81.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079547836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.315 kcal (2) G-P(sol) polarization free energy of solvation -83.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds