Wall clock time and date at job start Mon Mar 30 2020 02:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39836 * 126.45969 * 2 1 4 4 C 1.35454 * 107.86411 * 180.30283 * 3 2 1 5 5 N 1.35536 * 108.87093 * 359.73768 * 4 3 2 6 6 H 0.96994 * 125.67436 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64574 * 0.02562 * 5 4 3 8 8 C 1.46673 * 126.23234 * 179.97438 * 7 5 4 9 9 O 1.21701 * 120.00243 * 180.02562 * 8 7 5 10 10 N 1.34774 * 120.00099 * 0.02877 * 8 7 5 11 11 C 1.46503 * 120.00117 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.64133 * 31.85488 * 11 10 8 13 13 C 1.54327 * 110.72054 * 268.51928 * 11 10 8 14 14 N 1.47023 * 107.27183 * 219.44343 * 13 11 10 15 15 C 1.36926 * 125.64805 * 178.92004 * 14 13 11 16 16 H 1.08007 * 120.00436 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00106 * 0.02562 * 15 14 13 18 18 N 1.31619 * 120.00194 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47474 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46939 * 120.00645 * 19 17 15 22 22 H 1.48499 * 109.47434 * 240.00332 * 19 17 15 23 23 C 1.47426 * 108.70017 * 358.94170 * 14 13 11 24 24 C 1.54908 * 104.83670 * 24.12554 * 23 14 13 25 25 H 1.09002 * 111.03096 * 81.07805 * 24 23 14 26 26 C 1.52997 * 111.00591 * 204.91523 * 24 23 14 27 27 H 1.09000 * 109.47342 * 270.13440 * 1 2 3 28 28 H 1.08996 * 109.46903 * 30.13821 * 1 2 3 29 29 H 1.09001 * 109.47059 * 150.13675 * 1 2 3 30 30 H 1.07994 * 126.06450 * 0.06493 * 3 2 1 31 31 H 1.08000 * 125.56200 * 179.77735 * 4 3 2 32 32 H 0.97003 * 120.00074 * 359.97438 * 10 8 7 33 33 H 1.09007 * 109.87861 * 338.86186 * 13 11 10 34 34 H 1.08997 * 109.87995 * 100.02146 * 13 11 10 35 35 H 0.96993 * 120.00208 * 179.97438 * 18 17 15 36 36 H 1.09003 * 110.36151 * 265.28751 * 23 14 13 37 37 H 1.08998 * 110.36368 * 142.96742 * 23 14 13 38 38 H 1.09002 * 109.47153 * 172.19741 * 26 24 23 39 39 H 1.09001 * 109.46832 * 52.19932 * 26 24 23 40 40 H 1.09004 * 109.47261 * 292.19913 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0068 5 7 3.6283 -0.6626 -0.0052 6 1 4.4190 -1.2245 -0.0087 7 6 2.3262 -1.1090 0.0022 8 6 1.8898 -2.5093 0.0056 9 8 0.7025 -2.7766 0.0118 10 7 2.8036 -3.4999 0.0020 11 6 2.3677 -4.8986 0.0060 12 1 1.4234 -5.0083 -0.5272 13 6 2.2484 -5.4292 1.4503 14 7 2.7526 -6.8103 1.4510 15 6 2.8369 -7.6285 2.5456 16 1 3.2240 -8.6315 2.4417 17 6 2.4249 -7.1690 3.7890 18 7 1.9527 -5.9470 3.9157 19 14 2.5393 -8.2855 5.2823 20 1 3.0994 -9.5995 4.8762 21 1 3.4249 -7.6632 6.2990 22 1 1.1849 -8.4813 5.8590 23 6 3.1528 -7.1680 0.0779 24 6 3.4567 -5.8148 -0.6120 25 1 4.4557 -5.4612 -0.3567 26 6 3.2870 -5.9221 -2.1288 27 1 -0.3634 0.0024 1.0276 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8912 -0.5117 30 1 2.0137 2.1548 0.0010 31 1 4.4973 1.3251 -0.0120 32 1 3.7499 -3.2869 -0.0032 33 1 2.8487 -4.8150 2.1216 34 1 1.2050 -5.4153 1.7653 35 1 1.6645 -5.6260 4.7844 36 1 2.3376 -7.6800 -0.4335 37 1 4.0447 -7.7945 0.0938 38 1 3.3699 -4.9310 -2.5747 39 1 2.3071 -6.3419 -2.3559 40 1 4.0632 -6.5700 -2.5363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079645063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:02 Heat of formation + Delta-G solvation = 28.692007 kcal Electronic energy + Delta-G solvation = -21781.453593 eV Core-core repulsion = 18597.372181 eV Total energy + Delta-G solvation = -3184.081412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25648 -39.09013 -37.35900 -34.03726 -32.83053 -32.20222 -30.38769 -29.81450 -27.82762 -26.57908 -25.62393 -23.78389 -22.11842 -20.77187 -20.22558 -19.82080 -18.85178 -18.34282 -16.89180 -15.85309 -15.52864 -15.08362 -14.80685 -14.00595 -13.79340 -13.60725 -13.50925 -13.27244 -12.95914 -12.80876 -12.63456 -12.51016 -12.16658 -11.96581 -11.70293 -11.47506 -11.36301 -11.03222 -10.80155 -10.63727 -10.39099 -10.00833 -9.93032 -9.72302 -9.55214 -8.75895 -8.64740 -8.54641 -8.05537 -6.84114 -5.69394 -3.04946 1.60911 2.76822 3.11915 3.40119 3.44810 3.47680 3.48522 3.67694 4.50118 4.96622 4.97991 5.12404 5.24863 5.29113 5.38520 5.41793 5.54549 5.73681 5.80368 5.94170 5.95848 5.99414 6.02613 6.12709 6.17183 6.22390 6.32705 6.45295 6.48090 6.60283 6.73422 6.76848 6.91596 7.01396 7.37767 7.57201 7.58518 7.83840 7.89354 8.25209 8.54895 9.21375 9.82095 10.46865 11.41303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.004852 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.057943 B = 5769.706397 C = 6554.256585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.080 4.080 3 C -0.213 4.213 4 C 0.017 3.983 5 N -0.541 5.541 6 H 0.415 0.585 7 C -0.049 4.049 8 C 0.586 3.414 9 O -0.524 6.524 10 N -0.713 5.713 11 C 0.122 3.878 12 H 0.092 0.908 13 C 0.173 3.827 14 N -0.606 5.606 15 C -0.231 4.231 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.075 0.925 26 C -0.137 4.137 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.388 0.612 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.252 0.748 36 H 0.023 0.977 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 11.735 -11.258 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.238 4.238 4 C -0.118 4.118 5 N -0.137 5.137 6 H 0.252 0.748 7 C -0.162 4.162 8 C 0.373 3.627 9 O -0.400 6.400 10 N -0.363 5.363 11 C 0.017 3.983 12 H 0.110 0.890 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.015 3.985 24 C -0.134 4.134 25 H 0.093 0.907 26 C -0.195 4.195 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.185 0.815 32 H 0.221 0.779 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.421 11.374 -11.019 16.442 hybrid contribution 1.100 -0.549 0.984 1.575 sum 5.521 10.826 -10.034 15.759 Atomic orbital electron populations 1.20332 0.89386 1.02622 1.02316 1.19943 0.95913 0.90772 1.02201 1.20764 0.91890 0.98662 1.12461 1.21930 0.99429 0.83026 1.07428 1.41959 1.07277 1.07221 1.57212 0.74770 1.20420 0.83537 0.93927 1.18350 1.17007 0.86116 0.82834 0.76733 1.90814 1.15963 1.83079 1.50177 1.45818 1.08545 1.06666 1.75248 1.22528 0.97456 0.78060 1.00272 0.89047 1.21477 0.99635 0.85234 0.88914 1.44418 1.74577 1.11684 1.02620 1.19098 1.36633 0.94907 0.85305 0.90251 1.24834 1.01103 0.96791 0.97674 1.69981 1.47948 1.15702 1.22937 0.86051 0.77299 0.79510 0.82931 1.20485 1.21817 1.21683 1.21588 0.97231 0.93121 0.86608 1.22623 0.98422 0.97842 0.94539 0.90679 1.21698 1.01783 1.00984 0.95027 0.91502 0.92348 0.90084 0.84209 0.81463 0.77940 0.93240 0.93313 0.93740 0.95952 0.93991 0.93208 0.92472 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.83 36.01 0.35 -0.89 16 2 C -0.08 -1.16 6.21 -104.16 -0.65 -1.80 16 3 C -0.21 -2.47 10.76 -39.98 -0.43 -2.90 16 4 C 0.02 0.17 11.89 -16.91 -0.20 -0.03 16 5 N -0.54 -5.93 5.99 -9.39 -0.06 -5.99 16 6 H 0.42 3.37 8.19 -40.82 -0.33 3.04 16 7 C -0.05 -0.74 7.06 -81.98 -0.58 -1.32 16 8 C 0.59 10.47 7.79 -12.86 -0.10 10.37 16 9 O -0.52 -11.20 14.45 5.19 0.07 -11.13 16 10 N -0.71 -11.68 5.10 -53.33 -0.27 -11.95 16 11 C 0.12 2.33 2.79 -66.09 -0.18 2.15 16 12 H 0.09 1.87 7.44 -51.93 -0.39 1.49 16 13 C 0.17 4.33 5.12 -3.06 -0.02 4.31 16 14 N -0.61 -15.59 3.39 -170.07 -0.58 -16.16 16 15 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 16 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.74 10.31 55.49 0.57 -27.17 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C 0.14 2.86 6.70 -2.53 -0.02 2.84 16 24 C -0.11 -1.89 3.27 -88.47 -0.29 -2.18 16 25 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 26 C -0.14 -1.82 9.31 37.16 0.35 -1.48 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.27 6.49 -51.93 -0.34 0.94 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.39 5.10 7.69 -40.82 -0.31 4.79 16 33 H 0.05 1.36 7.27 -51.92 -0.38 0.98 16 34 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.02 0.46 7.98 -51.93 -0.41 0.04 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -34.28 328.21 -8.24 -42.53 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.89 Total: 5.45 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.01 Total: 2.11 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.33 Total: -61.27 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.28 -8.24 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079645063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.219 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds