Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39836 * 126.45969 * 2 1 4 4 C 1.35454 * 107.86411 * 180.30283 * 3 2 1 5 5 N 1.35536 * 108.87093 * 359.73768 * 4 3 2 6 6 H 0.96994 * 125.67436 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64574 * 0.02562 * 5 4 3 8 8 C 1.46673 * 126.23234 * 179.97438 * 7 5 4 9 9 O 1.21701 * 120.00243 * 180.02562 * 8 7 5 10 10 N 1.34774 * 120.00099 * 0.02877 * 8 7 5 11 11 C 1.46503 * 120.00117 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.64133 * 31.85488 * 11 10 8 13 13 C 1.54327 * 110.72054 * 268.51928 * 11 10 8 14 14 N 1.47023 * 107.27183 * 219.44343 * 13 11 10 15 15 C 1.36926 * 125.64805 * 178.92004 * 14 13 11 16 16 H 1.08007 * 120.00436 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00106 * 0.02562 * 15 14 13 18 18 N 1.31619 * 120.00194 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47474 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46939 * 120.00645 * 19 17 15 22 22 H 1.48499 * 109.47434 * 240.00332 * 19 17 15 23 23 C 1.47426 * 108.70017 * 358.94170 * 14 13 11 24 24 C 1.54908 * 104.83670 * 24.12554 * 23 14 13 25 25 H 1.09002 * 111.03096 * 81.07805 * 24 23 14 26 26 C 1.52997 * 111.00591 * 204.91523 * 24 23 14 27 27 H 1.09000 * 109.47342 * 270.13440 * 1 2 3 28 28 H 1.08996 * 109.46903 * 30.13821 * 1 2 3 29 29 H 1.09001 * 109.47059 * 150.13675 * 1 2 3 30 30 H 1.07994 * 126.06450 * 0.06493 * 3 2 1 31 31 H 1.08000 * 125.56200 * 179.77735 * 4 3 2 32 32 H 0.97003 * 120.00074 * 359.97438 * 10 8 7 33 33 H 1.09007 * 109.87861 * 338.86186 * 13 11 10 34 34 H 1.08997 * 109.87995 * 100.02146 * 13 11 10 35 35 H 0.96993 * 120.00208 * 179.97438 * 18 17 15 36 36 H 1.09003 * 110.36151 * 265.28751 * 23 14 13 37 37 H 1.08998 * 110.36368 * 142.96742 * 23 14 13 38 38 H 1.09002 * 109.47153 * 172.19741 * 26 24 23 39 39 H 1.09001 * 109.46832 * 52.19932 * 26 24 23 40 40 H 1.09004 * 109.47261 * 292.19913 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0068 5 7 3.6283 -0.6626 -0.0052 6 1 4.4190 -1.2245 -0.0087 7 6 2.3262 -1.1090 0.0022 8 6 1.8898 -2.5093 0.0056 9 8 0.7025 -2.7766 0.0118 10 7 2.8036 -3.4999 0.0020 11 6 2.3677 -4.8986 0.0060 12 1 1.4234 -5.0083 -0.5272 13 6 2.2484 -5.4292 1.4503 14 7 2.7526 -6.8103 1.4510 15 6 2.8369 -7.6285 2.5456 16 1 3.2240 -8.6315 2.4417 17 6 2.4249 -7.1690 3.7890 18 7 1.9527 -5.9470 3.9157 19 14 2.5393 -8.2855 5.2823 20 1 3.0994 -9.5995 4.8762 21 1 3.4249 -7.6632 6.2990 22 1 1.1849 -8.4813 5.8590 23 6 3.1528 -7.1680 0.0779 24 6 3.4567 -5.8148 -0.6120 25 1 4.4557 -5.4612 -0.3567 26 6 3.2870 -5.9221 -2.1288 27 1 -0.3634 0.0024 1.0276 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8912 -0.5117 30 1 2.0137 2.1548 0.0010 31 1 4.4973 1.3251 -0.0120 32 1 3.7499 -3.2869 -0.0032 33 1 2.8487 -4.8150 2.1216 34 1 1.2050 -5.4153 1.7653 35 1 1.6645 -5.6260 4.7844 36 1 2.3376 -7.6800 -0.4335 37 1 4.0447 -7.7945 0.0938 38 1 3.3699 -4.9310 -2.5747 39 1 2.3071 -6.3419 -2.3559 40 1 4.0632 -6.5700 -2.5363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079645063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 4.220092 kcal Electronic energy + Delta-G solvation = -21782.514775 eV Core-core repulsion = 18597.372181 eV Total energy + Delta-G solvation = -3185.142594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26706 -40.54417 -38.96628 -35.73150 -34.44054 -33.33996 -32.20818 -30.92353 -29.39296 -27.83619 -27.30895 -25.43998 -23.47802 -22.05346 -21.67704 -21.32317 -20.00719 -19.44960 -18.91411 -17.38531 -16.99168 -16.63634 -16.18807 -15.64602 -15.38670 -14.81050 -14.74954 -14.58847 -14.46965 -14.10553 -13.84007 -13.71995 -13.59423 -13.35953 -13.16466 -13.04595 -12.91927 -12.64639 -12.52770 -12.16545 -12.08109 -11.89266 -11.68591 -11.50236 -11.00552 -10.78848 -10.11330 -9.67276 -9.08938 -8.95991 -7.87434 -5.25814 0.49509 1.42726 1.44800 1.55245 1.86597 2.06351 2.28716 2.38613 2.47589 3.31237 3.54685 3.70682 3.95844 4.02177 4.06262 4.27592 4.28641 4.41106 4.46770 4.58309 4.69037 4.85357 4.88627 4.89253 5.01485 5.01908 5.05783 5.13245 5.19821 5.24743 5.42219 5.45910 5.48467 5.57446 5.73540 5.81680 6.00301 6.13440 6.51401 6.66119 7.03344 7.20489 7.72641 8.36489 9.22032 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.004852 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.057943 B = 5769.706397 C = 6554.256585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.096 4.096 3 C -0.230 4.230 4 C 0.051 3.949 5 N -0.529 5.529 6 H 0.429 0.571 7 C -0.088 4.088 8 C 0.581 3.419 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.137 3.863 12 H 0.075 0.925 13 C 0.189 3.811 14 N -0.628 5.628 15 C -0.242 4.242 16 H 0.090 0.910 17 C -0.070 4.070 18 N -0.955 5.955 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.291 1.291 22 H -0.296 1.296 23 C 0.132 3.868 24 C -0.093 4.093 25 H 0.093 0.907 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.164 0.836 31 H 0.218 0.782 32 H 0.406 0.594 33 H 0.017 0.983 34 H -0.011 1.011 35 H 0.244 0.756 36 H 0.026 0.974 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 12.683 -12.746 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.253 4.253 4 C -0.086 4.086 5 N -0.126 5.126 6 H 0.269 0.731 7 C -0.201 4.201 8 C 0.370 3.630 9 O -0.453 6.453 10 N -0.352 5.352 11 C 0.031 3.969 12 H 0.093 0.907 13 C 0.062 3.938 14 N -0.354 5.354 15 C -0.370 4.370 16 H 0.108 0.892 17 C -0.263 4.263 18 N -0.604 5.604 19 Si 0.809 3.191 20 H -0.183 1.183 21 H -0.218 1.218 22 H -0.224 1.224 23 C 0.007 3.993 24 C -0.113 4.113 25 H 0.111 0.889 26 C -0.186 4.186 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.181 0.819 31 H 0.235 0.765 32 H 0.242 0.758 33 H 0.035 0.965 34 H 0.007 0.993 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.375 12.292 -12.553 19.055 hybrid contribution 0.206 -0.781 1.426 1.639 sum 7.582 11.511 -11.127 17.714 Atomic orbital electron populations 1.20295 0.90006 1.02590 1.01702 1.20285 0.96176 0.92057 1.01969 1.21106 0.92175 0.98952 1.13102 1.22748 1.00473 0.82449 1.02909 1.41953 1.06275 1.08096 1.56317 0.73129 1.19983 0.85692 0.92209 1.22201 1.17513 0.85580 0.84272 0.75591 1.90783 1.18004 1.84057 1.52459 1.45582 1.09472 1.05262 1.74867 1.22077 0.98430 0.80074 0.96317 0.90680 1.21094 0.95302 0.85365 0.92009 1.44736 1.74586 1.11714 1.04400 1.19580 1.35544 0.95642 0.86281 0.89197 1.25746 1.01441 0.98256 1.00834 1.70251 1.49486 1.17740 1.22888 0.84969 0.76733 0.78419 0.78978 1.18334 1.21797 1.22353 1.21867 0.97713 0.95536 0.84165 1.22545 0.97880 0.94307 0.96550 0.88897 1.21651 1.02470 1.02612 0.91893 0.92441 0.89628 0.92771 0.81865 0.76532 0.75799 0.96511 0.99303 0.94677 0.95654 0.92420 0.91605 0.93051 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.55 9.83 71.24 0.70 -1.85 16 2 C -0.10 -2.72 6.21 -19.56 -0.12 -2.85 16 3 C -0.23 -4.66 10.76 22.01 0.24 -4.42 16 4 C 0.05 0.78 11.89 83.48 0.99 1.77 16 5 N -0.53 -10.23 5.99 -183.62 -1.10 -11.33 16 6 H 0.43 5.66 8.19 -92.71 -0.76 4.90 16 7 C -0.09 -2.63 7.06 40.35 0.28 -2.34 16 8 C 0.58 21.59 7.79 86.45 0.67 22.26 16 9 O -0.57 -26.37 14.45 -4.35 -0.06 -26.44 16 10 N -0.70 -23.27 5.10 -440.86 -2.25 -25.52 16 11 C 0.14 5.41 2.79 46.18 0.13 5.54 16 12 H 0.08 3.23 7.44 -2.39 -0.02 3.22 16 13 C 0.19 10.00 5.12 86.73 0.44 10.44 16 14 N -0.63 -33.08 3.39 -691.97 -2.35 -35.43 16 15 C -0.24 -13.82 10.28 84.04 0.86 -12.95 16 16 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 17 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 18 N -0.95 -60.71 10.31 21.65 0.22 -60.49 16 19 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 C 0.13 5.25 6.70 86.85 0.58 5.83 16 24 C -0.09 -2.93 3.27 -9.40 -0.03 -2.96 16 25 H 0.09 2.64 8.01 -2.39 -0.02 2.62 16 26 C -0.13 -3.02 9.31 71.98 0.67 -2.35 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.84 6.49 -2.39 -0.02 1.82 16 30 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.41 10.25 7.69 -92.71 -0.71 9.53 16 33 H 0.02 0.98 7.27 -2.38 -0.02 0.96 16 34 H -0.01 -0.72 7.51 -2.39 -0.02 -0.74 16 35 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.03 1.01 7.98 -2.39 -0.02 0.99 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.28 8.07 -2.39 -0.02 1.26 16 40 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -81.37 328.21 1.97 -79.40 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.41 Total: 18.32 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.89 Total: 12.46 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -5.47 Total: -132.77 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -81.37 1.97 -79.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079645063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.620 kcal (2) G-P(sol) polarization free energy of solvation -81.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds