Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34487 * 126.83300 * 2 1 4 4 N 1.36442 * 108.85726 * 180.02562 * 3 2 1 5 5 H 0.96996 * 124.85715 * 180.02562 * 4 3 2 6 6 C 1.34665 * 110.29898 * 359.97438 * 4 3 2 7 7 C 1.36775 * 108.39262 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94086 * 179.97438 * 7 6 4 9 9 O 1.21624 * 120.00333 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99660 * 359.97281 * 8 7 6 11 11 C 1.46506 * 119.99530 * 179.97438 * 10 8 7 12 12 H 1.08991 * 110.64135 * 34.30418 * 11 10 8 13 13 C 1.54321 * 110.72061 * 271.15755 * 11 10 8 14 14 N 1.47020 * 107.27039 * 219.44585 * 13 11 10 15 15 C 1.36936 * 125.64795 * 178.90779 * 14 13 11 16 16 H 1.08001 * 120.00502 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00221 * 0.02562 * 15 14 13 18 18 N 1.31624 * 119.99711 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47025 * 89.99978 * 19 17 15 21 21 H 1.48504 * 109.47460 * 210.00082 * 19 17 15 22 22 H 1.48496 * 109.47467 * 329.99867 * 19 17 15 23 23 C 1.47422 * 108.70445 * 358.94170 * 14 13 11 24 24 C 1.55118 * 104.94019 * 24.00447 * 23 14 13 25 25 H 1.09000 * 110.93793 * 81.21554 * 24 23 14 26 26 C 1.53004 * 111.16227 * 205.12775 * 24 23 14 27 27 H 1.08999 * 109.46382 * 269.97447 * 1 2 3 28 28 H 1.08994 * 109.46863 * 29.96905 * 1 2 3 29 29 H 1.08995 * 109.46860 * 149.97779 * 1 2 3 30 30 H 1.08005 * 125.57128 * 359.97438 * 3 2 1 31 31 H 1.07999 * 125.80322 * 180.26165 * 6 4 3 32 32 H 0.97001 * 120.00360 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.88665 * 338.86279 * 13 11 10 34 34 H 1.09004 * 109.88069 * 99.87795 * 13 11 10 35 35 H 0.97000 * 119.99556 * 180.02562 * 18 17 15 36 36 H 1.09002 * 110.36286 * 142.96630 * 23 14 13 37 37 H 1.09001 * 110.36699 * 265.17636 * 23 14 13 38 38 H 1.09001 * 109.47503 * 172.17053 * 26 24 23 39 39 H 1.09001 * 109.47375 * 292.17218 * 26 24 23 40 40 H 1.08996 * 109.47153 * 52.17075 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2413 -0.0003 6 6 3.6657 -0.6902 -0.0004 7 6 2.3864 -1.1740 -0.0003 8 6 1.9749 -2.5880 -0.0006 9 8 0.7937 -2.8777 0.0001 10 7 2.9074 -3.5611 -0.0016 11 6 2.4981 -4.9678 -0.0013 12 1 1.5812 -5.1012 -0.5753 13 6 2.3189 -5.4841 1.4419 14 7 2.8482 -6.8550 1.4839 15 6 2.8950 -7.6589 2.5915 16 1 3.3053 -8.6553 2.5188 17 6 2.4149 -7.1932 3.8079 18 7 1.9144 -5.9791 3.8965 19 14 2.4780 -8.2900 5.3186 20 1 3.7652 -8.0806 6.0289 21 1 1.3516 -7.9499 6.2247 22 1 2.3672 -9.7114 4.9034 23 6 3.3212 -7.2207 0.1363 24 6 3.6310 -5.8693 -0.5592 25 1 4.6105 -5.4942 -0.2627 26 6 3.5322 -5.9957 -2.0808 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9868 2.1059 -0.0004 31 1 4.5665 -1.2860 0.0033 32 1 3.8496 -3.3302 -0.0017 33 1 2.8743 -4.8509 2.1338 34 1 1.2616 -5.4842 1.7070 35 1 1.5793 -5.6535 4.7466 36 1 4.2228 -7.8296 0.2031 37 1 2.5422 -7.7559 -0.4068 38 1 3.6166 -5.0079 -2.5338 39 1 4.3380 -6.6327 -2.4456 40 1 2.5716 -6.4367 -2.3471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080934197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = 29.764490 kcal Electronic energy + Delta-G solvation = -21705.523487 eV Core-core repulsion = 18521.488581 eV Total energy + Delta-G solvation = -3184.034905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09770 -38.96005 -37.18145 -33.76481 -32.55162 -32.31048 -30.30694 -29.90833 -27.40997 -26.45709 -25.55516 -23.82767 -22.42995 -20.29922 -20.04515 -19.45040 -18.74351 -18.22379 -16.79309 -15.94532 -15.54374 -14.89708 -14.65650 -13.97584 -13.78265 -13.55249 -13.44817 -13.27867 -12.92054 -12.70015 -12.55136 -12.46432 -12.21297 -11.86564 -11.62449 -11.28199 -11.24300 -10.94887 -10.73020 -10.49371 -10.30636 -9.88952 -9.85337 -9.63262 -9.28370 -8.60311 -8.53277 -8.26697 -8.20293 -6.75611 -5.61657 -2.97189 1.92717 2.47806 3.19299 3.44700 3.49417 3.52310 3.77469 4.00615 4.56370 4.86189 5.04753 5.13147 5.22992 5.38831 5.48048 5.52681 5.61634 5.70041 5.85412 5.89462 6.02159 6.06993 6.07801 6.20246 6.23390 6.32087 6.39265 6.45039 6.58827 6.69934 6.87279 6.93193 6.94276 7.07326 7.42123 7.65861 7.72680 7.95387 8.15899 8.34074 8.89178 9.29193 9.89865 10.55387 11.48626 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.004830 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.166748 B = 5796.174187 C = 6619.384478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.109 4.109 3 C -0.033 4.033 4 N -0.553 5.553 5 H 0.415 0.585 6 C 0.041 3.959 7 C -0.216 4.216 8 C 0.585 3.415 9 O -0.541 6.541 10 N -0.713 5.713 11 C 0.124 3.876 12 H 0.087 0.913 13 C 0.173 3.827 14 N -0.606 5.606 15 C -0.231 4.231 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.917 5.917 19 Si 0.911 3.089 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.075 0.925 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.391 0.609 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.252 0.748 36 H 0.040 0.960 37 H 0.021 0.979 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 13.598 -11.231 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.160 4.160 4 N -0.147 5.147 5 H 0.251 0.749 6 C -0.095 4.095 7 C -0.227 4.227 8 C 0.373 3.627 9 O -0.418 6.418 10 N -0.363 5.363 11 C 0.019 3.981 12 H 0.105 0.895 13 C 0.048 3.952 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.015 3.985 24 C -0.134 4.134 25 H 0.094 0.906 26 C -0.194 4.194 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.183 0.817 31 H 0.188 0.812 32 H 0.224 0.776 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.962 13.480 -10.997 18.091 hybrid contribution 0.996 -0.106 1.002 1.417 sum 5.958 13.375 -9.995 17.728 Atomic orbital electron populations 1.20191 0.89404 1.02344 1.02109 1.20583 0.95680 0.90434 1.04831 1.21515 0.82513 0.99047 1.12909 1.41431 1.08141 1.06647 1.58495 0.74932 1.21912 0.98636 0.83753 1.05164 1.20534 0.92540 0.93242 1.16383 1.17342 0.85628 0.83797 0.75914 1.90742 1.17201 1.83605 1.50288 1.45758 1.08751 1.06218 1.75556 1.22431 0.97078 0.78473 1.00160 0.89519 1.21474 0.99210 0.85339 0.89216 1.44416 1.71892 1.12970 1.04037 1.19045 1.35122 0.95732 0.86028 0.90390 1.24830 1.00980 0.96848 0.97759 1.69993 1.46011 1.16059 1.24380 0.86138 0.77109 0.79598 0.83018 1.21707 1.21695 1.20694 1.21609 0.96764 0.93160 0.86997 1.22639 0.98338 0.97869 0.94558 0.90637 1.21688 1.01640 1.00993 0.95105 0.91742 0.92712 0.90186 0.81663 0.81246 0.77624 0.93234 0.93451 0.93756 0.94136 0.96115 0.93102 0.92921 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.98 36.01 0.36 -0.78 16 2 C -0.11 -1.53 6.35 -102.54 -0.65 -2.18 16 3 C -0.03 -0.34 11.82 -16.83 -0.20 -0.54 16 4 N -0.55 -4.84 5.90 -12.84 -0.08 -4.91 16 5 H 0.41 2.02 8.96 -40.82 -0.37 1.65 16 6 C 0.04 0.46 11.40 -16.84 -0.19 0.26 16 7 C -0.22 -3.31 6.29 -103.35 -0.65 -3.96 16 8 C 0.59 11.01 7.81 -12.59 -0.10 10.91 16 9 O -0.54 -12.27 15.00 5.26 0.08 -12.20 16 10 N -0.71 -12.28 5.11 -53.15 -0.27 -12.55 16 11 C 0.12 2.47 2.74 -66.10 -0.18 2.29 16 12 H 0.09 1.86 7.51 -51.93 -0.39 1.47 16 13 C 0.17 4.47 5.13 -3.07 -0.02 4.45 16 14 N -0.61 -15.98 3.40 -169.94 -0.58 -16.55 16 15 C -0.23 -6.61 10.28 -15.06 -0.15 -6.77 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -28.20 10.31 55.49 0.57 -27.63 16 19 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.14 2.95 6.72 -2.42 -0.02 2.93 16 24 C -0.11 -1.96 3.27 -88.36 -0.29 -2.25 16 25 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 26 C -0.14 -1.88 9.32 37.16 0.35 -1.53 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.28 6.85 -51.93 -0.36 0.92 16 30 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.17 1.35 7.45 -52.49 -0.39 0.96 16 32 H 0.39 5.43 7.48 -40.82 -0.31 5.12 16 33 H 0.05 1.40 7.27 -51.93 -0.38 1.03 16 34 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 35 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -36.15 329.19 -8.08 -44.23 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.91 Total: 4.46 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.84 Total: 2.52 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.35 Total: -61.64 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.15 -8.08 -44.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080934197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.995 kcal (2) G-P(sol) polarization free energy of solvation -36.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds