Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34487 * 126.83300 * 2 1 4 4 N 1.36442 * 108.85726 * 180.02562 * 3 2 1 5 5 H 0.96996 * 124.85715 * 180.02562 * 4 3 2 6 6 C 1.34665 * 110.29898 * 359.97438 * 4 3 2 7 7 C 1.36775 * 108.39262 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94086 * 179.97438 * 7 6 4 9 9 O 1.21624 * 120.00333 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99660 * 359.97281 * 8 7 6 11 11 C 1.46506 * 119.99530 * 179.97438 * 10 8 7 12 12 H 1.08991 * 110.64135 * 34.30418 * 11 10 8 13 13 C 1.54321 * 110.72061 * 271.15755 * 11 10 8 14 14 N 1.47020 * 107.27039 * 219.44585 * 13 11 10 15 15 C 1.36936 * 125.64795 * 178.90779 * 14 13 11 16 16 H 1.08001 * 120.00502 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00221 * 0.02562 * 15 14 13 18 18 N 1.31624 * 119.99711 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47025 * 89.99978 * 19 17 15 21 21 H 1.48504 * 109.47460 * 210.00082 * 19 17 15 22 22 H 1.48496 * 109.47467 * 329.99867 * 19 17 15 23 23 C 1.47422 * 108.70445 * 358.94170 * 14 13 11 24 24 C 1.55118 * 104.94019 * 24.00447 * 23 14 13 25 25 H 1.09000 * 110.93793 * 81.21554 * 24 23 14 26 26 C 1.53004 * 111.16227 * 205.12775 * 24 23 14 27 27 H 1.08999 * 109.46382 * 269.97447 * 1 2 3 28 28 H 1.08994 * 109.46863 * 29.96905 * 1 2 3 29 29 H 1.08995 * 109.46860 * 149.97779 * 1 2 3 30 30 H 1.08005 * 125.57128 * 359.97438 * 3 2 1 31 31 H 1.07999 * 125.80322 * 180.26165 * 6 4 3 32 32 H 0.97001 * 120.00360 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.88665 * 338.86279 * 13 11 10 34 34 H 1.09004 * 109.88069 * 99.87795 * 13 11 10 35 35 H 0.97000 * 119.99556 * 180.02562 * 18 17 15 36 36 H 1.09002 * 110.36286 * 142.96630 * 23 14 13 37 37 H 1.09001 * 110.36699 * 265.17636 * 23 14 13 38 38 H 1.09001 * 109.47503 * 172.17053 * 26 24 23 39 39 H 1.09001 * 109.47375 * 292.17218 * 26 24 23 40 40 H 1.08996 * 109.47153 * 52.17075 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2413 -0.0003 6 6 3.6657 -0.6902 -0.0004 7 6 2.3864 -1.1740 -0.0003 8 6 1.9749 -2.5880 -0.0006 9 8 0.7937 -2.8777 0.0001 10 7 2.9074 -3.5611 -0.0016 11 6 2.4981 -4.9678 -0.0013 12 1 1.5812 -5.1012 -0.5753 13 6 2.3189 -5.4841 1.4419 14 7 2.8482 -6.8550 1.4839 15 6 2.8950 -7.6589 2.5915 16 1 3.3053 -8.6553 2.5188 17 6 2.4149 -7.1932 3.8079 18 7 1.9144 -5.9791 3.8965 19 14 2.4780 -8.2900 5.3186 20 1 3.7652 -8.0806 6.0289 21 1 1.3516 -7.9499 6.2247 22 1 2.3672 -9.7114 4.9034 23 6 3.3212 -7.2207 0.1363 24 6 3.6310 -5.8693 -0.5592 25 1 4.6105 -5.4942 -0.2627 26 6 3.5322 -5.9957 -2.0808 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9868 2.1059 -0.0004 31 1 4.5665 -1.2860 0.0033 32 1 3.8496 -3.3302 -0.0017 33 1 2.8743 -4.8509 2.1338 34 1 1.2616 -5.4842 1.7070 35 1 1.5793 -5.6535 4.7466 36 1 4.2228 -7.8296 0.2031 37 1 2.5422 -7.7559 -0.4068 38 1 3.6166 -5.0079 -2.5338 39 1 4.3380 -6.6327 -2.4456 40 1 2.5716 -6.4367 -2.3471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080934197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = 3.091982 kcal Electronic energy + Delta-G solvation = -21706.680093 eV Core-core repulsion = 18521.488581 eV Total energy + Delta-G solvation = -3185.191512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.04033 -40.48794 -38.84909 -35.57495 -34.25294 -33.29561 -32.17497 -31.06607 -29.12661 -27.41993 -27.33959 -25.49775 -23.83563 -21.98343 -21.54550 -20.67908 -19.96304 -19.11764 -18.86524 -17.34607 -17.06205 -16.83279 -15.92217 -15.59383 -15.26662 -14.83131 -14.74747 -14.54795 -14.41042 -14.02935 -13.90237 -13.66831 -13.57045 -13.32452 -13.23878 -13.00610 -12.87489 -12.57227 -12.27787 -12.19273 -11.99332 -11.84438 -11.63541 -11.43323 -10.80797 -10.73434 -9.98544 -9.47111 -9.13345 -8.92415 -7.83704 -5.22560 0.85560 1.43732 1.47295 1.54161 1.56079 2.27845 2.48449 2.54919 2.67518 3.34074 3.62581 3.77014 4.04295 4.09474 4.13567 4.14213 4.34092 4.47201 4.55860 4.64198 4.75514 4.76853 4.89655 4.92190 4.95707 5.07997 5.09658 5.18113 5.26409 5.31283 5.40084 5.46393 5.51636 5.66869 5.83789 5.87582 6.00426 6.17053 6.73643 6.82280 7.06733 7.49494 7.76334 8.40662 9.25347 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.004830 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.166748 B = 5796.174187 C = 6619.384478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.155 4.155 3 C -0.006 4.006 4 N -0.530 5.530 5 H 0.439 0.561 6 C 0.070 3.930 7 C -0.270 4.270 8 C 0.578 3.422 9 O -0.596 6.596 10 N -0.700 5.700 11 C 0.138 3.862 12 H 0.067 0.933 13 C 0.190 3.810 14 N -0.628 5.628 15 C -0.243 4.243 16 H 0.090 0.910 17 C -0.071 4.071 18 N -0.954 5.954 19 Si 0.982 3.018 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.265 1.265 23 C 0.132 3.868 24 C -0.092 4.092 25 H 0.095 0.905 26 C -0.128 4.128 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.205 0.795 31 H 0.205 0.795 32 H 0.410 0.590 33 H 0.016 0.984 34 H -0.015 1.015 35 H 0.243 0.757 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 14.775 -12.604 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.161 4.161 3 C -0.134 4.134 4 N -0.126 5.126 5 H 0.280 0.720 6 C -0.068 4.068 7 C -0.280 4.280 8 C 0.368 3.632 9 O -0.478 6.478 10 N -0.351 5.351 11 C 0.032 3.968 12 H 0.085 0.915 13 C 0.064 3.936 14 N -0.355 5.355 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.264 4.264 18 N -0.603 5.603 19 Si 0.810 3.190 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.190 1.190 23 C 0.007 3.993 24 C -0.112 4.112 25 H 0.113 0.887 26 C -0.186 4.186 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.222 0.778 31 H 0.221 0.779 32 H 0.246 0.754 33 H 0.034 0.966 34 H 0.003 0.997 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.274 14.672 -12.416 20.926 hybrid contribution 0.002 -0.433 1.408 1.473 sum 8.277 14.239 -11.008 19.810 Atomic orbital electron populations 1.20089 0.90309 1.02067 1.01138 1.20815 0.95924 0.91562 1.07847 1.21955 0.82328 0.99641 1.09488 1.41484 1.08720 1.06206 1.56200 0.72001 1.22266 0.97974 0.84829 1.01770 1.20421 0.95143 0.91411 1.21050 1.18043 0.84990 0.85583 0.74554 1.90705 1.19551 1.84646 1.52913 1.45538 1.09705 1.04754 1.75123 1.21987 0.98128 0.80636 0.96055 0.91484 1.21083 0.94792 0.85482 0.92285 1.44742 1.72010 1.12960 1.05752 1.19551 1.34194 0.96482 0.86975 0.89214 1.25772 1.01191 0.98298 1.01116 1.70278 1.47480 1.18172 1.24418 0.85022 0.76811 0.78367 0.78799 1.20753 1.22620 1.18954 1.21895 0.97181 0.95570 0.84653 1.22566 0.97551 0.94307 0.96747 0.88716 1.21642 1.02417 1.02663 0.91833 0.93138 0.89581 0.93772 0.77804 0.77857 0.75356 0.96558 0.99714 0.94736 0.92428 0.95906 0.91401 0.90106 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 9.98 71.24 0.71 -1.55 16 2 C -0.16 -4.31 6.35 -18.51 -0.12 -4.43 16 3 C -0.01 -0.10 11.82 83.12 0.98 0.88 16 4 N -0.53 -7.02 5.90 -194.55 -1.15 -8.16 16 5 H 0.44 1.90 8.96 -92.71 -0.83 1.07 16 6 C 0.07 1.33 11.40 83.92 0.96 2.29 16 7 C -0.27 -8.22 6.29 -19.04 -0.12 -8.33 16 8 C 0.58 22.79 7.81 86.61 0.68 23.46 16 9 O -0.60 -29.53 15.00 -4.11 -0.06 -29.59 16 10 N -0.70 -24.46 5.11 -440.33 -2.25 -26.71 16 11 C 0.14 5.72 2.74 46.18 0.13 5.84 16 12 H 0.07 3.05 7.51 -2.39 -0.02 3.03 16 13 C 0.19 10.42 5.13 86.73 0.44 10.87 16 14 N -0.63 -34.00 3.40 -691.58 -2.35 -36.35 16 15 C -0.24 -14.19 10.28 84.03 0.86 -13.32 16 16 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 17 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 18 N -0.95 -61.97 10.31 21.65 0.22 -61.74 16 19 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 22 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.13 5.41 6.72 86.93 0.58 5.99 16 24 C -0.09 -3.01 3.27 -9.33 -0.03 -3.04 16 25 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 26 C -0.13 -3.13 9.32 71.98 0.67 -2.46 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.55 6.85 -2.39 -0.02 1.54 16 30 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.20 2.34 7.45 -2.91 -0.02 2.32 16 32 H 0.41 10.78 7.48 -92.71 -0.69 10.08 16 33 H 0.02 0.98 7.27 -2.39 -0.02 0.96 16 34 H -0.02 -1.02 7.51 -2.39 -0.02 -1.04 16 35 H 0.24 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 37 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.28 8.08 -2.39 -0.02 1.26 16 Total: -1.00 -87.72 329.19 2.19 -85.53 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.47 Total: 14.89 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.21 Total: 12.40 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -5.52 Total: -132.96 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.06 Total: -29.59 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -87.72 2.19 -85.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080934197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.625 kcal (2) G-P(sol) polarization free energy of solvation -87.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds