Wall clock time and date at job start Mon Mar 30 2020 01:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34656 * 125.80254 * 2 1 4 4 H 0.96998 * 124.84762 * 359.97438 * 3 2 1 5 5 C 1.36445 * 110.30011 * 180.24599 * 3 2 1 6 6 C 1.34486 * 108.85690 * 359.61834 * 5 3 2 7 7 C 1.36777 * 125.80250 * 180.02562 * 2 1 3 8 8 C 1.47264 * 126.94160 * 359.94276 * 7 2 1 9 9 O 1.21630 * 119.99757 * 349.21072 * 8 7 2 10 10 N 1.34773 * 119.99680 * 169.20924 * 8 7 2 11 11 C 1.46501 * 120.00047 * 0.80970 * 10 8 7 12 12 C 1.46501 * 119.99922 * 180.80804 * 10 8 7 13 13 C 1.53007 * 109.46724 * 84.70951 * 12 10 8 14 14 H 1.09000 * 112.96691 * 294.08008 * 13 12 10 15 15 C 1.53937 * 113.77125 * 65.76682 * 13 12 10 16 16 C 1.53941 * 86.29447 * 137.90311 * 15 13 12 17 17 N 1.47581 * 113.76383 * 162.40691 * 13 12 10 18 18 C 1.36935 * 134.49797 * 41.06745 * 17 13 12 19 19 H 1.08004 * 120.00147 * 4.90794 * 18 17 13 20 20 C 1.38811 * 120.00580 * 184.90815 * 18 17 13 21 21 N 1.31621 * 119.99570 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47120 * 59.99945 * 22 20 18 24 24 H 1.48505 * 109.46935 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47078 * 299.99738 * 22 20 18 26 26 H 1.09000 * 109.46897 * 89.98009 * 1 2 3 27 27 H 1.09010 * 109.47084 * 209.97568 * 1 2 3 28 28 H 1.08992 * 109.47463 * 329.97972 * 1 2 3 29 29 H 1.07997 * 125.57275 * 179.76527 * 5 3 2 30 30 H 1.07996 * 126.83658 * 180.13867 * 6 5 3 31 31 H 1.08996 * 109.47199 * 83.24722 * 11 10 8 32 32 H 1.09004 * 109.46879 * 203.24640 * 11 10 8 33 33 H 1.08998 * 109.47279 * 323.23940 * 11 10 8 34 34 H 1.08991 * 109.47341 * 204.70904 * 12 10 8 35 35 H 1.09002 * 109.46839 * 324.71474 * 12 10 8 36 36 H 1.09005 * 113.74065 * 252.25236 * 15 13 12 37 37 H 1.09006 * 113.74123 * 23.44514 * 15 13 12 38 38 H 1.09003 * 113.76665 * 90.69219 * 16 15 13 39 39 H 1.09001 * 113.76949 * 221.97759 * 16 15 13 40 40 H 0.97000 * 120.00132 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 -0.0004 5 6 3.6095 0.7274 -0.0055 6 6 3.6882 -0.6151 -0.0007 7 6 2.3071 -1.1093 -0.0005 8 6 1.8703 -2.5157 0.0001 9 8 0.7019 -2.7894 0.1982 10 7 2.7652 -3.4993 -0.2191 11 6 4.1756 -3.1705 -0.4402 12 6 2.3275 -4.8973 -0.2361 13 6 1.8070 -5.2517 -1.6306 14 1 0.9003 -4.7086 -1.8969 15 6 2.8909 -5.2231 -2.7233 16 6 2.2477 -6.5167 -3.2550 17 7 1.7270 -6.7033 -1.8843 18 6 1.3305 -7.7863 -1.1460 19 1 0.9051 -7.6436 -0.1636 20 6 1.4753 -9.0675 -1.6600 21 7 1.9933 -9.2415 -2.8575 22 14 0.9338 -10.5447 -0.6530 23 1 -0.5179 -10.4381 -0.3591 24 1 1.1927 -11.7891 -1.4210 25 1 1.6955 -10.5813 0.6212 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8903 0.5135 28 1 -0.3634 0.8897 0.5141 29 1 4.4497 1.4060 -0.0103 30 1 4.5890 -1.2109 -0.0010 31 1 4.6727 -3.0378 0.5207 32 1 4.6558 -3.9807 -0.9889 33 1 4.2476 -2.2485 -1.0170 34 1 3.1684 -5.5443 0.0131 35 1 1.5316 -5.0378 0.4953 36 1 2.8042 -4.3773 -3.4054 37 1 3.9028 -5.3589 -2.3414 38 1 1.4697 -6.3466 -3.9993 39 1 2.9705 -7.2733 -3.5605 40 1 2.0942 -10.1368 -3.2169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085539230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:14 Heat of formation + Delta-G solvation = 84.849998 kcal Electronic energy + Delta-G solvation = -21739.955861 eV Core-core repulsion = 18558.309642 eV Total energy + Delta-G solvation = -3181.646218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35207 -39.12129 -37.52068 -35.05874 -32.10419 -31.59001 -31.30285 -28.30128 -27.74241 -26.99019 -25.63969 -23.29018 -22.97553 -21.12859 -20.88167 -18.98470 -18.30418 -17.56754 -16.60897 -15.68764 -15.65409 -15.36828 -14.73545 -14.45587 -14.03263 -13.94559 -13.54323 -13.34656 -12.94343 -12.82232 -12.64543 -12.60633 -12.22020 -12.07904 -11.65740 -11.37239 -11.29168 -10.88264 -10.65063 -10.58876 -10.38264 -9.72453 -9.64459 -9.49913 -9.33294 -8.86533 -8.66517 -8.33839 -8.01777 -6.74160 -5.64628 -2.97352 1.82352 2.36459 3.02290 3.47309 3.47649 3.51428 3.54086 3.79455 4.56817 4.76223 4.84076 5.10525 5.13623 5.30260 5.40575 5.46274 5.54289 5.57258 5.64485 5.71507 5.77847 5.82480 5.90817 6.02494 6.14786 6.17082 6.33303 6.44709 6.59980 6.68133 6.77971 6.85118 6.90687 7.02945 7.32770 7.37755 7.58996 7.70663 7.88129 8.11115 8.68235 9.16507 9.82976 10.74209 11.51707 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032414 B = 0.004000 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.613138 B = 6998.234628 C = 7275.730869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.100 3.900 3 N -0.555 5.555 4 H 0.413 0.587 5 C -0.025 4.025 6 C -0.182 4.182 7 C -0.226 4.226 8 C 0.585 3.415 9 O -0.550 6.550 10 N -0.601 5.601 11 C 0.066 3.934 12 C 0.121 3.879 13 C 0.132 3.868 14 H 0.047 0.953 15 C -0.157 4.157 16 C 0.155 3.845 17 N -0.603 5.603 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.021 0.979 39 H 0.077 0.923 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 22.331 4.356 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 N -0.151 5.151 4 H 0.249 0.751 5 C -0.152 4.152 6 C -0.205 4.205 7 C -0.236 4.236 8 C 0.375 3.625 9 O -0.430 6.430 10 N -0.332 5.332 11 C -0.077 4.077 12 C -0.002 4.002 13 C 0.024 3.976 14 H 0.065 0.935 15 C -0.195 4.195 16 C 0.030 3.970 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.895 21.914 4.519 22.905 hybrid contribution -0.341 -0.384 0.404 0.653 sum 4.554 21.530 4.923 22.551 Atomic orbital electron populations 1.20605 0.87111 1.04355 1.03442 1.20334 0.93694 0.85619 1.02121 1.41602 1.06325 1.08264 1.58914 0.75105 1.21785 0.85576 0.96604 1.11241 1.22813 0.96638 0.93528 1.07558 1.20218 0.93177 0.92303 1.17886 1.17371 0.84925 0.83948 0.76256 1.90725 1.17490 1.83871 1.50907 1.47554 1.08124 1.06842 1.70719 1.22432 0.81812 1.02699 1.00737 1.21741 1.00425 0.78956 0.99117 1.22516 0.95363 0.87046 0.92625 0.93550 1.23732 0.98457 0.98825 0.98472 1.22302 0.94921 0.92383 0.87393 1.46058 1.76586 0.99319 1.10976 1.18990 1.33983 0.83703 0.97922 0.90490 1.24751 1.01716 0.97044 0.96960 1.69816 1.49964 1.20806 1.16414 0.86235 0.78393 0.82276 0.79092 1.21277 1.21670 1.21130 0.90588 0.87619 0.92065 0.81592 0.82084 0.93006 0.90942 0.89689 0.90047 0.90840 0.93520 0.91023 0.96077 0.90492 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.00 36.00 0.36 -0.69 16 2 C 0.10 1.18 7.17 -81.88 -0.59 0.59 16 3 N -0.56 -4.62 5.90 -9.11 -0.05 -4.68 16 4 H 0.41 1.99 8.96 -40.82 -0.37 1.63 16 5 C -0.02 -0.21 11.89 -16.82 -0.20 -0.41 16 6 C -0.18 -1.94 8.83 -37.50 -0.33 -2.27 16 7 C -0.23 -3.17 6.06 -103.35 -0.63 -3.80 16 8 C 0.58 10.22 7.62 -12.59 -0.10 10.12 16 9 O -0.55 -11.36 14.48 5.25 0.08 -11.28 16 10 N -0.60 -9.90 2.78 -182.91 -0.51 -10.41 16 11 C 0.07 0.80 8.44 59.85 0.51 1.31 16 12 C 0.12 2.38 5.24 -4.04 -0.02 2.36 16 13 C 0.13 2.94 4.54 -66.86 -0.30 2.64 16 14 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.16 -3.13 7.32 -25.80 -0.19 -3.32 16 16 C 0.16 3.84 7.65 -2.85 -0.02 3.82 16 17 N -0.60 -16.11 3.58 -169.75 -0.61 -16.72 16 18 C -0.22 -6.32 10.51 -15.06 -0.16 -6.48 16 19 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -28.01 11.32 55.49 0.63 -27.39 16 22 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.11 1.43 6.31 -51.92 -0.33 1.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.16 1.42 4.85 -52.49 -0.25 1.17 16 31 H 0.05 0.54 7.63 -51.93 -0.40 0.14 16 32 H 0.07 0.88 6.67 -51.93 -0.35 0.53 16 33 H 0.08 0.91 4.86 -51.93 -0.25 0.66 16 34 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 35 H 0.07 1.59 7.57 -51.93 -0.39 1.19 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.06 6.97 -51.93 -0.36 1.70 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -35.40 323.39 -7.94 -43.34 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.56 Total: 0.92 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.76 Total: 3.54 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.54 Total: -59.18 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.40 -7.94 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085539230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.193 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds