Wall clock time and date at job start Mon Mar 30 2020 01:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34656 * 125.80254 * 2 1 4 4 H 0.96998 * 124.84762 * 359.97438 * 3 2 1 5 5 C 1.36445 * 110.30011 * 180.24599 * 3 2 1 6 6 C 1.34486 * 108.85690 * 359.61834 * 5 3 2 7 7 C 1.36777 * 125.80250 * 180.02562 * 2 1 3 8 8 C 1.47264 * 126.94160 * 359.94276 * 7 2 1 9 9 O 1.21630 * 119.99757 * 349.21072 * 8 7 2 10 10 N 1.34773 * 119.99680 * 169.20924 * 8 7 2 11 11 C 1.46501 * 120.00047 * 0.80970 * 10 8 7 12 12 C 1.46501 * 119.99922 * 180.80804 * 10 8 7 13 13 C 1.53007 * 109.46724 * 84.70951 * 12 10 8 14 14 H 1.09000 * 112.96691 * 294.08008 * 13 12 10 15 15 C 1.53937 * 113.77125 * 65.76682 * 13 12 10 16 16 C 1.53941 * 86.29447 * 137.90311 * 15 13 12 17 17 N 1.47581 * 113.76383 * 162.40691 * 13 12 10 18 18 C 1.36935 * 134.49797 * 41.06745 * 17 13 12 19 19 H 1.08004 * 120.00147 * 4.90794 * 18 17 13 20 20 C 1.38811 * 120.00580 * 184.90815 * 18 17 13 21 21 N 1.31621 * 119.99570 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47120 * 59.99945 * 22 20 18 24 24 H 1.48505 * 109.46935 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47078 * 299.99738 * 22 20 18 26 26 H 1.09000 * 109.46897 * 89.98009 * 1 2 3 27 27 H 1.09010 * 109.47084 * 209.97568 * 1 2 3 28 28 H 1.08992 * 109.47463 * 329.97972 * 1 2 3 29 29 H 1.07997 * 125.57275 * 179.76527 * 5 3 2 30 30 H 1.07996 * 126.83658 * 180.13867 * 6 5 3 31 31 H 1.08996 * 109.47199 * 83.24722 * 11 10 8 32 32 H 1.09004 * 109.46879 * 203.24640 * 11 10 8 33 33 H 1.08998 * 109.47279 * 323.23940 * 11 10 8 34 34 H 1.08991 * 109.47341 * 204.70904 * 12 10 8 35 35 H 1.09002 * 109.46839 * 324.71474 * 12 10 8 36 36 H 1.09005 * 113.74065 * 252.25236 * 15 13 12 37 37 H 1.09006 * 113.74123 * 23.44514 * 15 13 12 38 38 H 1.09003 * 113.76665 * 90.69219 * 16 15 13 39 39 H 1.09001 * 113.76949 * 221.97759 * 16 15 13 40 40 H 0.97000 * 120.00132 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 -0.0004 5 6 3.6095 0.7274 -0.0055 6 6 3.6882 -0.6151 -0.0007 7 6 2.3071 -1.1093 -0.0005 8 6 1.8703 -2.5157 0.0001 9 8 0.7019 -2.7894 0.1982 10 7 2.7652 -3.4993 -0.2191 11 6 4.1756 -3.1705 -0.4402 12 6 2.3275 -4.8973 -0.2361 13 6 1.8070 -5.2517 -1.6306 14 1 0.9003 -4.7086 -1.8969 15 6 2.8909 -5.2231 -2.7233 16 6 2.2477 -6.5167 -3.2550 17 7 1.7270 -6.7033 -1.8843 18 6 1.3305 -7.7863 -1.1460 19 1 0.9051 -7.6436 -0.1636 20 6 1.4753 -9.0675 -1.6600 21 7 1.9933 -9.2415 -2.8575 22 14 0.9338 -10.5447 -0.6530 23 1 -0.5179 -10.4381 -0.3591 24 1 1.1927 -11.7891 -1.4210 25 1 1.6955 -10.5813 0.6212 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8903 0.5135 28 1 -0.3634 0.8897 0.5141 29 1 4.4497 1.4060 -0.0103 30 1 4.5890 -1.2109 -0.0010 31 1 4.6727 -3.0378 0.5207 32 1 4.6558 -3.9807 -0.9889 33 1 4.2476 -2.2485 -1.0170 34 1 3.1684 -5.5443 0.0131 35 1 1.5316 -5.0378 0.4953 36 1 2.8042 -4.3773 -3.4054 37 1 3.9028 -5.3589 -2.3414 38 1 1.4697 -6.3466 -3.9993 39 1 2.9705 -7.2733 -3.5605 40 1 2.0942 -10.1368 -3.2169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085539230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:13 Heat of formation + Delta-G solvation = 60.750748 kcal Electronic energy + Delta-G solvation = -21741.000883 eV Core-core repulsion = 18558.309642 eV Total energy + Delta-G solvation = -3182.691240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18781 -40.52496 -39.24562 -36.42215 -34.23085 -32.43389 -32.29439 -29.84162 -29.68546 -28.01434 -26.65699 -25.31841 -24.53032 -22.38338 -21.74647 -20.83444 -19.44830 -18.68658 -18.30684 -17.20919 -16.85232 -16.81049 -16.40381 -15.82761 -15.61353 -14.97398 -14.82568 -14.75249 -14.05395 -14.02310 -13.81970 -13.74476 -13.62226 -13.41144 -13.30470 -12.94558 -12.68638 -12.54848 -12.41157 -12.28614 -11.95697 -11.75375 -11.56523 -11.31195 -10.81725 -10.72027 -9.71387 -9.56282 -9.00559 -8.86383 -7.87287 -5.22116 0.81771 1.44698 1.48641 1.54584 1.63863 2.05781 2.45323 2.54347 2.62789 3.31812 3.46852 3.83714 3.97210 4.01014 4.24645 4.33786 4.34533 4.42096 4.43840 4.55450 4.69621 4.69828 4.73313 4.85202 4.93622 4.95247 5.04192 5.05581 5.08420 5.12668 5.26285 5.33042 5.54784 5.59507 5.77845 5.87438 5.97582 6.07005 6.61737 6.76441 6.94551 7.39493 7.62846 8.59914 9.28430 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032414 B = 0.004000 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.613138 B = 6998.234628 C = 7275.730869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.093 3.907 3 N -0.538 5.538 4 H 0.432 0.568 5 C -0.002 4.002 6 C -0.199 4.199 7 C -0.264 4.264 8 C 0.574 3.426 9 O -0.599 6.599 10 N -0.601 5.601 11 C 0.062 3.938 12 C 0.138 3.862 13 C 0.133 3.867 14 H 0.023 0.977 15 C -0.120 4.120 16 C 0.147 3.853 17 N -0.629 5.629 18 C -0.234 4.234 19 H 0.074 0.926 20 C -0.063 4.063 21 N -0.951 5.951 22 Si 0.977 3.023 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.273 1.273 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.211 0.789 30 H 0.178 0.822 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.009 0.991 39 H 0.054 0.946 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.548 25.030 4.963 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 N -0.135 5.135 4 H 0.272 0.728 5 C -0.129 4.129 6 C -0.222 4.222 7 C -0.275 4.275 8 C 0.367 3.633 9 O -0.482 6.482 10 N -0.332 5.332 11 C -0.080 4.080 12 C 0.014 3.986 13 C 0.026 3.974 14 H 0.041 0.959 15 C -0.158 4.158 16 C 0.022 3.978 17 N -0.356 5.356 18 C -0.362 4.362 19 H 0.092 0.908 20 C -0.256 4.256 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.199 1.199 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.228 0.772 30 H 0.195 0.805 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.927 24.684 5.133 26.146 hybrid contribution -0.989 -1.097 0.213 1.492 sum 5.938 23.587 5.346 24.903 Atomic orbital electron populations 1.20528 0.87137 1.04208 1.03427 1.20380 0.94074 0.86342 1.01880 1.41609 1.06189 1.08453 1.57199 0.72810 1.22451 0.86225 0.96438 1.07831 1.23009 0.95510 0.94802 1.08831 1.20155 0.95724 0.90608 1.20966 1.18048 0.84361 0.85601 0.75301 1.90693 1.19575 1.84809 1.53125 1.47598 1.09977 1.05072 1.70539 1.22729 0.79093 1.03704 1.02427 1.21269 0.99447 0.81411 0.96519 1.22548 0.95405 0.84457 0.95024 0.95908 1.23475 0.98226 0.97034 0.97077 1.22297 0.94513 0.94323 0.86673 1.46458 1.76519 1.00728 1.11846 1.19306 1.33749 0.84967 0.98212 0.90788 1.25574 1.02179 0.99661 0.98169 1.69998 1.51109 1.21011 1.17868 0.85190 0.77950 0.78517 0.77902 1.20998 1.21617 1.19877 0.90537 0.91077 0.88847 0.77230 0.80465 0.90846 0.90645 0.87617 0.89777 0.93777 0.90580 0.89015 0.97319 0.92803 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.00 71.23 0.71 -1.31 16 2 C 0.09 2.04 7.17 41.78 0.30 2.34 16 3 N -0.54 -6.91 5.90 -182.73 -1.08 -7.99 16 4 H 0.43 2.29 8.96 -92.71 -0.83 1.46 16 5 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 6 C -0.20 -3.55 8.83 23.62 0.21 -3.35 16 7 C -0.26 -7.10 6.06 -19.04 -0.12 -7.21 16 8 C 0.57 20.41 7.62 86.62 0.66 21.07 16 9 O -0.60 -26.19 14.48 -4.13 -0.06 -26.25 16 10 N -0.60 -19.63 2.78 -850.84 -2.37 -22.00 16 11 C 0.06 1.35 8.44 127.77 1.08 2.42 16 12 C 0.14 5.58 5.24 86.38 0.45 6.03 16 13 C 0.13 6.04 4.54 45.09 0.20 6.24 16 14 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 15 C -0.12 -4.71 7.32 31.25 0.23 -4.48 16 16 C 0.15 7.45 7.65 86.43 0.66 8.11 16 17 N -0.63 -34.56 3.58 -690.96 -2.48 -37.03 16 18 C -0.23 -13.93 10.51 84.03 0.88 -13.04 16 19 H 0.07 4.32 7.83 -2.91 -0.02 4.29 16 20 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.95 -59.08 11.32 21.65 0.25 -58.84 16 22 Si 0.98 47.69 29.55 68.60 2.03 49.71 16 23 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 2.04 6.31 -2.38 -0.02 2.03 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 30 H 0.18 2.41 4.85 -2.91 -0.01 2.40 16 31 H 0.07 1.31 7.63 -2.39 -0.02 1.29 16 32 H 0.07 1.61 6.67 -2.39 -0.02 1.59 16 33 H 0.11 1.91 4.86 -2.39 -0.01 1.90 16 34 H 0.08 3.32 8.03 -2.39 -0.02 3.30 16 35 H 0.04 2.01 7.57 -2.39 -0.02 1.99 16 36 H 0.08 2.56 8.14 -2.38 -0.02 2.55 16 37 H 0.09 3.25 6.95 -2.38 -0.02 3.23 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.05 2.97 6.97 -2.39 -0.02 2.95 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -81.22 323.39 3.25 -77.97 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.23 Total: 9.89 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.73 Total: 14.53 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -5.68 Total: -125.86 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -81.22 3.25 -77.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085539230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.720 kcal (2) G-P(sol) polarization free energy of solvation -81.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds