Wall clock time and date at job start Mon Mar 30 2020 01:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34667 * 125.79539 * 2 1 4 4 H 0.96996 * 124.85075 * 0.04664 * 3 2 1 5 5 C 1.36446 * 110.29108 * 180.02562 * 3 2 1 6 6 C 1.34484 * 108.85944 * 0.26975 * 5 3 2 7 7 C 1.36761 * 125.80396 * 180.02562 * 2 1 3 8 8 C 1.47263 * 126.94331 * 359.97438 * 7 2 1 9 9 O 1.21629 * 120.00045 * 350.56035 * 8 7 2 10 10 N 1.34776 * 119.99761 * 170.55437 * 8 7 2 11 11 C 1.46504 * 120.00531 * 359.97423 * 10 8 7 12 12 C 1.46504 * 119.99852 * 179.97438 * 10 8 7 13 13 C 1.53003 * 109.47001 * 95.43193 * 12 10 8 14 14 H 1.09000 * 112.96435 * 66.60256 * 13 12 10 15 15 C 1.53947 * 113.76970 * 294.92386 * 13 12 10 16 16 C 1.53946 * 86.29006 * 222.08700 * 15 13 12 17 17 N 1.47583 * 113.77139 * 198.42825 * 13 12 10 18 18 C 1.36932 * 134.49306 * 318.94569 * 17 13 12 19 19 H 1.08005 * 119.99892 * 5.47359 * 18 17 13 20 20 C 1.38807 * 120.00318 * 185.47512 * 18 17 13 21 21 N 1.31621 * 119.99620 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00459 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46964 * 89.99556 * 22 20 18 24 24 H 1.48493 * 109.47333 * 209.99843 * 22 20 18 25 25 H 1.48496 * 109.46794 * 330.00295 * 22 20 18 26 26 H 1.08995 * 109.47416 * 89.97502 * 1 2 3 27 27 H 1.09004 * 109.46536 * 209.97520 * 1 2 3 28 28 H 1.08997 * 109.47304 * 329.96495 * 1 2 3 29 29 H 1.08001 * 125.56965 * 180.02562 * 5 3 2 30 30 H 1.08004 * 126.83052 * 179.73677 * 6 5 3 31 31 H 1.08992 * 109.46995 * 83.69613 * 11 10 8 32 32 H 1.08994 * 109.46979 * 203.69715 * 11 10 8 33 33 H 1.08998 * 109.46383 * 323.69521 * 11 10 8 34 34 H 1.08994 * 109.47537 * 215.43180 * 12 10 8 35 35 H 1.08997 * 109.47041 * 335.43904 * 12 10 8 36 36 H 1.08997 * 113.74559 * 336.43785 * 15 13 12 37 37 H 1.09006 * 113.73819 * 107.63867 * 15 13 12 38 38 H 1.09003 * 113.76519 * 137.90271 * 16 15 13 39 39 H 1.08992 * 113.77425 * 269.19315 * 16 15 13 40 40 H 0.97004 * 120.00067 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0923 0.0000 4 1 1.9732 2.0074 0.0006 5 6 3.6095 0.7276 -0.0006 6 6 3.6882 -0.6150 -0.0069 7 6 2.3071 -1.1092 -0.0005 8 6 1.8703 -2.5155 -0.0006 9 8 0.6977 -2.7882 0.1725 10 7 2.7700 -3.5005 -0.1927 11 6 4.1823 -3.1721 -0.4019 12 6 2.3356 -4.8997 -0.1922 13 6 2.0870 -5.3569 -1.6310 14 1 2.9978 -5.3949 -2.2286 15 6 0.9216 -4.6258 -2.3218 16 6 0.5213 -6.0027 -2.8819 17 7 1.2542 -6.5710 -1.7338 18 6 1.1881 -7.7508 -1.0420 19 1 1.7949 -7.8944 -0.1601 20 6 0.3413 -8.7623 -1.4739 21 7 -0.3986 -8.5871 -2.5484 22 14 0.2516 -10.3721 -0.5305 23 1 -0.8007 -10.2763 0.5129 24 1 -0.0785 -11.4766 -1.4665 25 1 1.5626 -10.6428 0.1121 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3632 -0.8903 0.5135 28 1 -0.3634 0.8896 0.5144 29 1 4.4497 1.4061 -0.0003 30 1 4.5891 -1.2107 -0.0130 31 1 4.6692 -3.0305 0.5629 32 1 4.6690 -3.9866 -0.9384 33 1 4.2593 -2.2551 -0.9860 34 1 3.1103 -5.5205 0.2576 35 1 1.4147 -4.9940 0.3832 36 1 0.1937 -4.2058 -1.6276 37 1 1.2399 -3.9154 -3.0849 38 1 -0.5518 -6.1926 -2.8555 39 1 0.9699 -6.2312 -3.8485 40 1 -0.9901 -9.2940 -2.8505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085539231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:17 Heat of formation + Delta-G solvation = 86.086152 kcal Electronic energy + Delta-G solvation = -21865.845323 eV Core-core repulsion = 18684.252709 eV Total energy + Delta-G solvation = -3181.592615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33862 -39.12904 -37.39186 -35.09615 -32.09291 -31.56817 -31.27754 -28.23828 -27.67544 -27.00766 -25.68798 -23.21961 -22.93144 -21.13701 -20.85724 -18.83090 -18.32419 -17.56341 -16.57326 -15.77809 -15.63778 -15.26682 -14.70839 -14.47347 -14.03550 -13.84968 -13.59044 -13.30743 -12.93823 -12.79612 -12.64301 -12.57657 -12.15565 -12.14752 -11.60590 -11.26683 -11.11449 -10.89875 -10.69210 -10.58907 -10.29701 -9.73772 -9.57728 -9.41987 -9.24896 -8.85411 -8.66215 -8.30474 -8.00678 -6.71113 -5.63640 -2.94635 1.84913 2.37246 3.03787 3.47603 3.48372 3.53181 3.54307 3.83273 4.58275 4.78174 4.85309 5.11419 5.15500 5.32246 5.42137 5.45512 5.54749 5.61221 5.63549 5.73359 5.78790 5.84270 5.92478 6.07308 6.14902 6.20955 6.30754 6.55713 6.69678 6.73982 6.84612 6.94467 6.95419 7.02948 7.34268 7.42943 7.65953 7.74821 7.90099 8.12719 8.72922 9.18133 9.84684 10.77271 11.54218 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.004123 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.744318 B = 6789.654099 C = 7054.326017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.101 3.899 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.025 4.025 6 C -0.184 4.184 7 C -0.226 4.226 8 C 0.587 3.413 9 O -0.542 6.542 10 N -0.603 5.603 11 C 0.066 3.934 12 C 0.117 3.883 13 C 0.129 3.871 14 H 0.039 0.961 15 C -0.157 4.157 16 C 0.164 3.836 17 N -0.600 5.600 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 21.513 4.136 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 N -0.151 5.151 4 H 0.249 0.751 5 C -0.152 4.152 6 C -0.208 4.208 7 C -0.236 4.236 8 C 0.377 3.623 9 O -0.421 6.421 10 N -0.336 5.336 11 C -0.077 4.077 12 C -0.006 4.006 13 C 0.021 3.979 14 H 0.056 0.944 15 C -0.195 4.195 16 C 0.039 3.961 17 N -0.327 5.327 18 C -0.347 4.347 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.216 21.121 4.288 23.064 hybrid contribution 0.255 -0.572 0.304 0.696 sum 8.471 20.549 4.592 22.696 Atomic orbital electron populations 1.20612 0.87027 1.04363 1.03520 1.20350 0.93732 0.85581 1.01964 1.41610 1.06316 1.08284 1.58933 0.75109 1.21780 0.85594 0.96601 1.11253 1.22838 0.96685 0.93537 1.07723 1.20227 0.93112 0.92371 1.17866 1.17317 0.85020 0.83818 0.76176 1.90735 1.17049 1.83722 1.50568 1.47522 1.07716 1.06759 1.71573 1.22391 0.82006 1.02538 1.00774 1.21772 1.01114 0.78701 0.98994 1.22507 0.94075 0.87956 0.93367 0.94366 1.23811 0.98915 0.97226 0.99547 1.22103 0.98001 0.86324 0.89676 1.45963 1.37943 1.14424 1.34337 1.18995 1.20750 0.89751 1.05231 0.90439 1.24778 0.99908 0.98070 0.97725 1.69848 1.29116 1.33050 1.24790 0.86173 0.77670 0.83522 0.78730 1.21607 1.21779 1.20772 0.90503 0.87540 0.92123 0.81648 0.82077 0.93001 0.91388 0.89571 0.91770 0.88931 0.89479 0.94139 0.91701 0.95823 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.99 36.01 0.36 -0.71 16 2 C 0.10 1.20 7.17 -81.88 -0.59 0.62 16 3 N -0.56 -4.66 5.90 -9.11 -0.05 -4.72 16 4 H 0.41 2.03 8.96 -40.82 -0.37 1.67 16 5 C -0.03 -0.21 11.89 -16.83 -0.20 -0.41 16 6 C -0.18 -1.95 8.85 -37.50 -0.33 -2.28 16 7 C -0.23 -3.17 6.08 -103.35 -0.63 -3.79 16 8 C 0.59 10.18 7.23 -12.59 -0.09 10.09 16 9 O -0.54 -11.12 12.72 5.25 0.07 -11.05 16 10 N -0.60 -9.85 2.79 -182.91 -0.51 -10.37 16 11 C 0.07 0.78 8.74 59.85 0.52 1.30 16 12 C 0.12 2.30 5.37 -4.04 -0.02 2.28 16 13 C 0.13 2.83 4.58 -66.86 -0.31 2.52 16 14 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 15 C -0.16 -3.45 7.25 -25.80 -0.19 -3.63 16 16 C 0.16 4.24 7.39 -2.97 -0.02 4.22 16 17 N -0.60 -16.24 3.57 -170.74 -0.61 -16.85 16 18 C -0.22 -6.38 10.51 -15.06 -0.16 -6.53 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -28.55 11.53 55.49 0.64 -27.91 16 22 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.11 1.46 6.32 -51.93 -0.33 1.14 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.16 1.39 4.80 -52.48 -0.25 1.14 16 31 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 32 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 33 H 0.09 0.90 4.79 -51.93 -0.25 0.65 16 34 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.09 2.09 7.26 -51.93 -0.38 1.71 16 36 H 0.09 2.04 6.55 -51.93 -0.34 1.70 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.83 7.42 -51.93 -0.39 1.44 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -35.73 322.75 -7.99 -43.72 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.62 Total: 1.08 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.75 Total: 3.32 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.53 Total: -59.84 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.73 -7.99 -43.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085539231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.811 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds