Wall clock time and date at job start Mon Mar 30 2020 01:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34667 * 125.79539 * 2 1 4 4 H 0.96996 * 124.85075 * 0.04664 * 3 2 1 5 5 C 1.36446 * 110.29108 * 180.02562 * 3 2 1 6 6 C 1.34484 * 108.85944 * 0.26975 * 5 3 2 7 7 C 1.36761 * 125.80396 * 180.02562 * 2 1 3 8 8 C 1.47263 * 126.94331 * 359.97438 * 7 2 1 9 9 O 1.21629 * 120.00045 * 350.56035 * 8 7 2 10 10 N 1.34776 * 119.99761 * 170.55437 * 8 7 2 11 11 C 1.46504 * 120.00531 * 359.97423 * 10 8 7 12 12 C 1.46504 * 119.99852 * 179.97438 * 10 8 7 13 13 C 1.53003 * 109.47001 * 95.43193 * 12 10 8 14 14 H 1.09000 * 112.96435 * 66.60256 * 13 12 10 15 15 C 1.53947 * 113.76970 * 294.92386 * 13 12 10 16 16 C 1.53946 * 86.29006 * 222.08700 * 15 13 12 17 17 N 1.47583 * 113.77139 * 198.42825 * 13 12 10 18 18 C 1.36932 * 134.49306 * 318.94569 * 17 13 12 19 19 H 1.08005 * 119.99892 * 5.47359 * 18 17 13 20 20 C 1.38807 * 120.00318 * 185.47512 * 18 17 13 21 21 N 1.31621 * 119.99620 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00459 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46964 * 89.99556 * 22 20 18 24 24 H 1.48493 * 109.47333 * 209.99843 * 22 20 18 25 25 H 1.48496 * 109.46794 * 330.00295 * 22 20 18 26 26 H 1.08995 * 109.47416 * 89.97502 * 1 2 3 27 27 H 1.09004 * 109.46536 * 209.97520 * 1 2 3 28 28 H 1.08997 * 109.47304 * 329.96495 * 1 2 3 29 29 H 1.08001 * 125.56965 * 180.02562 * 5 3 2 30 30 H 1.08004 * 126.83052 * 179.73677 * 6 5 3 31 31 H 1.08992 * 109.46995 * 83.69613 * 11 10 8 32 32 H 1.08994 * 109.46979 * 203.69715 * 11 10 8 33 33 H 1.08998 * 109.46383 * 323.69521 * 11 10 8 34 34 H 1.08994 * 109.47537 * 215.43180 * 12 10 8 35 35 H 1.08997 * 109.47041 * 335.43904 * 12 10 8 36 36 H 1.08997 * 113.74559 * 336.43785 * 15 13 12 37 37 H 1.09006 * 113.73819 * 107.63867 * 15 13 12 38 38 H 1.09003 * 113.76519 * 137.90271 * 16 15 13 39 39 H 1.08992 * 113.77425 * 269.19315 * 16 15 13 40 40 H 0.97004 * 120.00067 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0923 0.0000 4 1 1.9732 2.0074 0.0006 5 6 3.6095 0.7276 -0.0006 6 6 3.6882 -0.6150 -0.0069 7 6 2.3071 -1.1092 -0.0005 8 6 1.8703 -2.5155 -0.0006 9 8 0.6977 -2.7882 0.1725 10 7 2.7700 -3.5005 -0.1927 11 6 4.1823 -3.1721 -0.4019 12 6 2.3356 -4.8997 -0.1922 13 6 2.0870 -5.3569 -1.6310 14 1 2.9978 -5.3949 -2.2286 15 6 0.9216 -4.6258 -2.3218 16 6 0.5213 -6.0027 -2.8819 17 7 1.2542 -6.5710 -1.7338 18 6 1.1881 -7.7508 -1.0420 19 1 1.7949 -7.8944 -0.1601 20 6 0.3413 -8.7623 -1.4739 21 7 -0.3986 -8.5871 -2.5484 22 14 0.2516 -10.3721 -0.5305 23 1 -0.8007 -10.2763 0.5129 24 1 -0.0785 -11.4766 -1.4665 25 1 1.5626 -10.6428 0.1121 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3632 -0.8903 0.5135 28 1 -0.3634 0.8896 0.5144 29 1 4.4497 1.4061 -0.0003 30 1 4.5891 -1.2107 -0.0130 31 1 4.6692 -3.0305 0.5629 32 1 4.6690 -3.9866 -0.9384 33 1 4.2593 -2.2551 -0.9860 34 1 3.1103 -5.5205 0.2576 35 1 1.4147 -4.9940 0.3832 36 1 0.1937 -4.2058 -1.6276 37 1 1.2399 -3.9154 -3.0849 38 1 -0.5518 -6.1926 -2.8555 39 1 0.9699 -6.2312 -3.8485 40 1 -0.9901 -9.2940 -2.8505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085539231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:16 Heat of formation + Delta-G solvation = 61.703107 kcal Electronic energy + Delta-G solvation = -21866.902652 eV Core-core repulsion = 18684.252709 eV Total energy + Delta-G solvation = -3182.649943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17242 -40.53871 -39.15102 -36.42595 -34.23145 -32.41994 -32.26829 -29.83448 -29.63163 -28.01160 -26.69050 -25.28664 -24.52357 -22.41594 -21.68872 -20.79269 -19.40285 -18.63356 -18.36409 -17.22633 -16.96244 -16.61382 -16.38720 -15.84068 -15.59299 -14.95760 -14.81689 -14.75800 -14.10190 -13.94676 -13.81232 -13.72285 -13.58817 -13.38847 -13.32135 -12.92227 -12.60643 -12.50251 -12.39649 -12.24273 -12.00166 -11.80711 -11.57176 -11.23170 -10.83857 -10.64459 -9.68774 -9.54372 -8.99783 -8.84015 -7.87618 -5.20533 0.85032 1.44754 1.48395 1.56206 1.65076 2.08191 2.46423 2.55848 2.67449 3.33420 3.46168 3.88896 3.99534 4.03227 4.28055 4.33962 4.36614 4.42897 4.45066 4.52984 4.69123 4.71790 4.75394 4.85621 4.88656 4.98933 5.01975 5.07417 5.11608 5.14261 5.24974 5.34875 5.53450 5.65794 5.78342 5.89143 5.96235 6.08647 6.64837 6.77861 6.93838 7.46335 7.63876 8.61367 9.30773 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.004123 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.744318 B = 6789.654099 C = 7054.326017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.093 3.907 3 N -0.539 5.539 4 H 0.432 0.568 5 C -0.003 4.003 6 C -0.200 4.200 7 C -0.264 4.264 8 C 0.576 3.424 9 O -0.589 6.589 10 N -0.604 5.604 11 C 0.061 3.939 12 C 0.132 3.868 13 C 0.136 3.864 14 H 0.058 0.942 15 C -0.131 4.131 16 C 0.161 3.839 17 N -0.628 5.628 18 C -0.229 4.229 19 H 0.086 0.914 20 C -0.072 4.072 21 N -0.958 5.958 22 Si 0.979 3.021 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.264 1.264 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.210 0.790 30 H 0.180 0.820 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.021 0.979 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 23.874 4.838 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 N -0.136 5.136 4 H 0.271 0.729 5 C -0.130 4.130 6 C -0.223 4.223 7 C -0.274 4.274 8 C 0.369 3.631 9 O -0.472 6.472 10 N -0.336 5.336 11 C -0.080 4.080 12 C 0.008 3.992 13 C 0.030 3.970 14 H 0.075 0.925 15 C -0.169 4.169 16 C 0.035 3.965 17 N -0.355 5.355 18 C -0.357 4.357 19 H 0.104 0.896 20 C -0.264 4.264 21 N -0.607 5.607 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.189 1.189 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.227 0.773 30 H 0.197 0.803 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.107 23.549 5.003 26.513 hybrid contribution -0.592 -1.158 0.092 1.304 sum 10.515 22.391 5.095 25.256 Atomic orbital electron populations 1.20522 0.87177 1.04156 1.03417 1.20377 0.94043 0.86357 1.01885 1.41618 1.06207 1.08458 1.57273 0.72871 1.22450 0.86213 0.96484 1.07896 1.23046 0.95595 0.94777 1.08912 1.20180 0.95633 0.90757 1.20799 1.17972 0.84492 0.85419 0.75261 1.90709 1.19110 1.84626 1.52735 1.47572 1.09644 1.04989 1.71374 1.22694 0.79186 1.03619 1.02500 1.21318 0.99988 0.81270 0.96656 1.22645 0.93995 0.85295 0.95105 0.92473 1.23501 0.98401 0.95686 0.99328 1.22024 0.95936 0.88824 0.89710 1.46293 1.39503 1.15186 1.34486 1.19431 1.20271 0.90439 1.05560 0.89595 1.25678 0.99985 1.01741 0.99021 1.70048 1.30131 1.33853 1.26684 0.85066 0.78179 0.78869 0.77166 1.21589 1.22046 1.18878 0.90562 0.91021 0.89006 0.77307 0.80347 0.90811 0.90726 0.87727 0.90389 0.92798 0.91314 0.91361 0.95204 0.96145 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.99 71.24 0.71 -1.35 16 2 C 0.09 2.06 7.17 41.78 0.30 2.36 16 3 N -0.54 -7.05 5.90 -182.72 -1.08 -8.13 16 4 H 0.43 2.44 8.96 -92.71 -0.83 1.61 16 5 C 0.00 -0.03 11.89 83.12 0.99 0.95 16 6 C -0.20 -3.55 8.85 23.62 0.21 -3.34 16 7 C -0.26 -7.04 6.08 -19.04 -0.12 -7.16 16 8 C 0.58 20.18 7.23 86.62 0.63 20.81 16 9 O -0.59 -25.51 12.72 -4.12 -0.05 -25.56 16 10 N -0.60 -19.30 2.79 -850.86 -2.38 -21.68 16 11 C 0.06 1.27 8.74 127.77 1.12 2.39 16 12 C 0.13 5.20 5.37 86.38 0.46 5.66 16 13 C 0.14 5.98 4.58 45.09 0.21 6.18 16 14 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.13 -5.86 7.25 31.25 0.23 -5.63 16 16 C 0.16 8.61 7.39 86.48 0.64 9.25 16 17 N -0.63 -34.77 3.57 -694.09 -2.48 -37.24 16 18 C -0.23 -13.52 10.51 84.03 0.88 -12.63 16 19 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 20 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.96 -61.45 11.53 21.65 0.25 -61.20 16 22 Si 0.98 48.00 29.55 68.60 2.03 50.03 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.10 6.32 -2.39 -0.02 2.08 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 30 H 0.18 2.35 4.80 -2.91 -0.01 2.34 16 31 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 32 H 0.07 1.46 8.02 -2.39 -0.02 1.44 16 33 H 0.10 1.83 4.79 -2.39 -0.01 1.82 16 34 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 35 H 0.05 2.54 7.26 -2.39 -0.02 2.52 16 36 H 0.07 3.37 6.55 -2.39 -0.02 3.35 16 37 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.03 1.78 7.42 -2.39 -0.02 1.76 16 39 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.96 322.75 3.24 -78.72 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.23 Total: 11.45 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.72 Total: 13.62 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.68 Total: -128.26 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -81.96 3.24 -78.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085539231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.422 kcal (2) G-P(sol) polarization free energy of solvation -81.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds